Difference between revisions of "Team:NJAU China/Description"

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<title>Team:NJAU_CHINA/Descriprion </title>
  
<h2> Project Description </h2>
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body{
<p>Tell us about your project, describe what moves you and why this is something important for your team.</p>
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background:#FFC;
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h2{
<h5>What should this page contain?</h5>
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background:url("https://static.igem.org/mediawiki/2015/6/67/NJAU_China2015_shark.png") no-repeat;
<ul>
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<li> A clear and concise description of your project.</li>
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</style>
<li>A detailed explanation of why your team chose to work on this particular project.</li>
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<link rel="stylesheet" type="text/css"  
<li>References and sources to document your research.</li>
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href="https://2015.igem.org/Template:NJAU_China/CSS/sub?action=raw&ctype=text/css" />
<li>Use illustrations and other visual resources to explain your project.</li>
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<br />
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<h4>Advice on writing your Project Description</h4>
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We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be consist, accurate and unambiguous in your achievements.
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</p>
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<p>
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Judges like to read your wiki and know exactly what you have achieved. This is how you should think about these sections; from the point of view of the judge evaluating you at the end of the year.
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</p>
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<br />
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<h4>References</h4>
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<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you though about your project and what works inspired you.</p>
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<h4>Inspiration</h4>
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<p>See how other teams have described and presented their projects: </p>
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<ul>
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<li><a href="https://2014.igem.org/Team:Imperial/Project"> Imperial</a></li>
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<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> UC Davis</a></li>
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<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">SYSU Software</a></li>
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</ul>
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<body>
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<div class="decration">
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<img src="https://static.igem.org/mediawiki/2015/6/63/NJAU_2015_desc.jpg" />
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</div>
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<div class="main_content">
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<div class="section">
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<h1>Project at-a-Glance</h1>
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<div class="first_down"><span>T</span>
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<p>o make the cellular memory come true, we designed a system with two different strains of E.coli to be our “signal recorder” and “data saver”, two different plasmids to control the process of “write-in” and “erase”, and one plasmid to connect these processes.</p>
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</div>
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<h2>Background</h2>
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<div class="first_down"><span>W</span>
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<p>hat is memory? What kind of process can be called “remember”? As far as we’re concerned, the memory is to change a transient presence into a long-term existence. Maybe they will have different existing forms, but there will be strict correspondence between them. For example, the persistent expression of a fluorescent protein caused by a transient light stimulus can be regarded as a “memory”. </p>
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</div>
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<div class="first_down"><span class="first_down">B</span>
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<p>ut there is also a problem that we can't ignore. As we all know, life can be regarded as a highly efficient machine. There is always a principle to guide its behavior: whether such an approach would make it better to live in this world. If yes, this action will survive, if not, it will be eliminated by the pressure of evolution. In most of the time, the response of the organism to the outside environment is transient. So we can’t to record this brief existence of external factors. Efficient living bodies do not allow themselves to express a certain substance in the condition of no need. This is precisely the key that we need to overcome.</p>
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</div>
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<div class="first_down"><span>M</span>
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<p>any scientists who are working on this area have their own unique insights on how to solve this problem. But there is a point of agreement whether using the recombinant enzyme or the reverse transcriptase or something else, they all use the DNA, a kind of material which is almost permanent stability in the life body.</p>
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</div>
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<img src="https://static.igem.org/mediawiki/2015/7/7b/NJAU_2015_DES_1.jpg"/>
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<img src="https://static.igem.org/mediawiki/2015/d/d9/NJAU_2015_DES_2.jpg"/>
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<img src="https://static.igem.org/mediawiki/2015/1/13/NJAU_2015_DES_3.jpg"/>
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<div class="first_down"><span>S</span>
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<p>o in our project, we also use DNA to storage information, but in an unprecedented way: we use the conjugation to realize the cellular memory.</p>
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</div>
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<h2>A Short Description</h2>
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<div class="first_down"><span>B</span>
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<p>acterial conjugation is the transfer of genetic material between bacterial cells by direct cell-to-cell contact or by a bridge-like connection between two cells. Discovered in 1946 by Joshua Lederberg and Edward Tatum, conjugation is a mechanism of horizontal gene transfer as the transformation and transduction although these two other mechanisms do not involve cell-to-cell contact.</p>
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</div>
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<img src="https://static.igem.org/mediawiki/2015/c/c0/NJAU_2015_DES_4.jpg"/>
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<div class="first_down"><span>W</span>
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<p>e use the Escherichia coli K-12(HfrH) strain to be our “Recorder”, if it feels a specific stimulation (the red light in our experiment), it can encode the traI (a necessary protein to the conjugation which has been knocked out in the Bacterial genome), then the oriT (transfer initiation sites, also be knocked out) can lead the reporter gene (GFP in our experiment) transfer from the “Recorder” to the “Saver” through the sex fimbria. And if we want to rewrite the record, we can use a specific artificial signal (the blue light in our experiment), to start the CRISPR_Cas9 system in the “Saver”, which can eliminate the reporter gene efficiently.</p>
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</div>
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<img src="https://static.igem.org/mediawiki/2015/7/7d/NJAU_2015_DES_5.jpg"/>
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<h2>References</h2>
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<br />
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[1] Holmes RK, Jobling MG (1996). Genetics: Conjugation. In: Baron's Medical Microbiology (Baron S et al., Eds.) (4th Ed.). Univ of Texas Medical Branch. ISBN 0-9631172-1-1. <br />
 +
[2] Lederberg J, Tatum EL (1946). "Gene recombination in E. coli". Nature 158 (4016): 558. Doi: 10.1038/158558a0. <br />
 +
[3] Griffiths AJF et al. (1999). An Introduction to genetic analysis (7th Ed.). San Francisco: W.H. Freeman. ISBN 0-7167-3520-2. <br />
 +
[4] Farzadfard F, Lu T K. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations [J]. Science, 2014, 346(6211): 1256272. <br />
 +
[5] Möglich A, Ayers R A, Moffat K. Design and signaling mechanism of light-regulated histidine kinases[J]. Journal of molecular biology, 2009, 385(5): 1433-1444. <br />
 +
[6] Willetts N, Skurray R. Structure and function of the F factor and mechanism of conjugation [J]. Escherichia coli and Salmonella typhimurium: cellular and molecular biology, 1987, 2: 1110-1133.
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</p>
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</div>
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</div>
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Latest revision as of 16:44, 18 September 2015

Team:NJAU_CHINA/Descriprion

Project at-a-Glance

T

o make the cellular memory come true, we designed a system with two different strains of E.coli to be our “signal recorder” and “data saver”, two different plasmids to control the process of “write-in” and “erase”, and one plasmid to connect these processes.

Background

W

hat is memory? What kind of process can be called “remember”? As far as we’re concerned, the memory is to change a transient presence into a long-term existence. Maybe they will have different existing forms, but there will be strict correspondence between them. For example, the persistent expression of a fluorescent protein caused by a transient light stimulus can be regarded as a “memory”.

B

ut there is also a problem that we can't ignore. As we all know, life can be regarded as a highly efficient machine. There is always a principle to guide its behavior: whether such an approach would make it better to live in this world. If yes, this action will survive, if not, it will be eliminated by the pressure of evolution. In most of the time, the response of the organism to the outside environment is transient. So we can’t to record this brief existence of external factors. Efficient living bodies do not allow themselves to express a certain substance in the condition of no need. This is precisely the key that we need to overcome.

M

any scientists who are working on this area have their own unique insights on how to solve this problem. But there is a point of agreement whether using the recombinant enzyme or the reverse transcriptase or something else, they all use the DNA, a kind of material which is almost permanent stability in the life body.

S

o in our project, we also use DNA to storage information, but in an unprecedented way: we use the conjugation to realize the cellular memory.

A Short Description

B

acterial conjugation is the transfer of genetic material between bacterial cells by direct cell-to-cell contact or by a bridge-like connection between two cells. Discovered in 1946 by Joshua Lederberg and Edward Tatum, conjugation is a mechanism of horizontal gene transfer as the transformation and transduction although these two other mechanisms do not involve cell-to-cell contact.

W

e use the Escherichia coli K-12(HfrH) strain to be our “Recorder”, if it feels a specific stimulation (the red light in our experiment), it can encode the traI (a necessary protein to the conjugation which has been knocked out in the Bacterial genome), then the oriT (transfer initiation sites, also be knocked out) can lead the reporter gene (GFP in our experiment) transfer from the “Recorder” to the “Saver” through the sex fimbria. And if we want to rewrite the record, we can use a specific artificial signal (the blue light in our experiment), to start the CRISPR_Cas9 system in the “Saver”, which can eliminate the reporter gene efficiently.

References


[1] Holmes RK, Jobling MG (1996). Genetics: Conjugation. In: Baron's Medical Microbiology (Baron S et al., Eds.) (4th Ed.). Univ of Texas Medical Branch. ISBN 0-9631172-1-1.
[2] Lederberg J, Tatum EL (1946). "Gene recombination in E. coli". Nature 158 (4016): 558. Doi: 10.1038/158558a0.
[3] Griffiths AJF et al. (1999). An Introduction to genetic analysis (7th Ed.). San Francisco: W.H. Freeman. ISBN 0-7167-3520-2.
[4] Farzadfard F, Lu T K. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations [J]. Science, 2014, 346(6211): 1256272.
[5] Möglich A, Ayers R A, Moffat K. Design and signaling mechanism of light-regulated histidine kinases[J]. Journal of molecular biology, 2009, 385(5): 1433-1444.
[6] Willetts N, Skurray R. Structure and function of the F factor and mechanism of conjugation [J]. Escherichia coli and Salmonella typhimurium: cellular and molecular biology, 1987, 2: 1110-1133.