Difference between revisions of "Team:SYSU-Software"

 
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<h2> Welcome to iGEM 2015! </h2>
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<p>Your team has been approved and you are ready to start the iGEM season! </p>
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<h4>Before you start: </h4>
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<p> Please read the following pages:</p>
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<li> <a href="https://2015.igem.org/Requirements">Requirements page </a> </li>
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<li> <a href="https://2015.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
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<h4> Styling your wiki </h4>
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<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
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<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>  
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        <h2>Abstract</h2>
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        <h2 class="center">Collaborative building of genetic design.</h2>
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        <p>The complexity in biological systems has made genetic circuit design difficult for individuals. Without co-development and an open, proof-of-principle engineering platform, it is hard for synthetic biologists to manage this complexity. To address this problem, we developed <span class="bold">Crowdsourcing Open Redesign Engine (CORE)</span>, an open and extensible software that allows users to design, share and cooperate in synthetic biology. CORE mainly consists of two closely interconnected modules. One is the "Synbio Hub". It helps users design and redesign, share and reuse previous projects according to the principle of modularized design. The other one is the CORE Design module embedded in the platform, which promotes genetic circuit design and assists wet-lab practices through protocol management and experiment schedule. Besides, a novel numerical simulation in CORE Design can predict the behaviour of genentic circuit, which was validated by our self-designed <a href="https://2015.igem.org/Team:SYSU-Software/Validation">wetlab experiments.</a>In conclusion, the combination of a crowdsourcing platform and a novel design module makes complex design more accessible to synthetic biologists.</p>
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        <div class="aimg"><a href="http://core.sysusoftware.info"><img src="https://static.igem.org/mediawiki/2015/8/8f/SYSU-Software_Abstract_03.jpg"></a>
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          <p class="center">Start Using</p>
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        <div class="aimg right"><a href="https://2015.igem.org/Team:SYSU-Software/Features"><img src="https://static.igem.org/mediawiki/2015/c/c6/SYSU-Software_Abstract_05.jpg"></a>
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        <div class="aimg right"><a href="https://2015.igem.org/Team:SYSU-Software/Tutorials"><img src="https://static.igem.org/mediawiki/2015/c/c7/SYSU-Software_Abstract_07.jpg"></a>
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          <p class="center">User Guide</p>
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        <div class="aimg right"><a href="https://github.com/igemsoftware/SYSU-Software-2015"><img src="https://static.igem.org/mediawiki/2015/0/06/SYSU-Software_Abstract_09.jpg"></a>
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          <p class="center">GitHub</p>
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<h4> Editing your wiki </h4>
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<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
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<p> <a href="https://2015.igem.org/wiki/index.php?title=Team:SYSU-Software&action=edit"> Click here to edit this page! </a></p>
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<p>See tips on how to edit your wiki on the <a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation</a> page.</p>
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<h4>Templates </h4>
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<p> This year we have created templates for teams to use freely. More information on how to use and edit the templates can be found on the
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<a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation </a> page.</p>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2015.igem.org/Calendar_of_Events">iGEM 2015 calendar</a> </li>
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<h4>Inspiration</h4>
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<p> You can also view other team wikis for inspiration! Here are some examples:</p>
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<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
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<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
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<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
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<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
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<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
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<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
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Latest revision as of 17:08, 1 October 2015

SYSU-SOFTWARE IGEM 2015

Abstract

Collaborative building of genetic design.

The complexity in biological systems has made genetic circuit design difficult for individuals. Without co-development and an open, proof-of-principle engineering platform, it is hard for synthetic biologists to manage this complexity. To address this problem, we developed Crowdsourcing Open Redesign Engine (CORE), an open and extensible software that allows users to design, share and cooperate in synthetic biology. CORE mainly consists of two closely interconnected modules. One is the "Synbio Hub". It helps users design and redesign, share and reuse previous projects according to the principle of modularized design. The other one is the CORE Design module embedded in the platform, which promotes genetic circuit design and assists wet-lab practices through protocol management and experiment schedule. Besides, a novel numerical simulation in CORE Design can predict the behaviour of genentic circuit, which was validated by our self-designed wetlab experiments.In conclusion, the combination of a crowdsourcing platform and a novel design module makes complex design more accessible to synthetic biologists.

Start Using

Features

User Guide

GitHub