Difference between revisions of "Team:Amoy/Notebook/Notebook"

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder.
2. Suck 10μl of plasmid into 50μl of competent cell for transformation.

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm.
5. Plasmid extraction.

Product:

Plasmid of promoter_J23100

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of ampicillin for 12h, 37℃, 200rpm.
5. Plasmid extraction.

Product:

Plasmid of promoter_LacI

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of ampicillin for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of RBS_B0034

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of ampicillin for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of RBS_B0032

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of RBS_B0030

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of LacI_RBS_B0034

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powde
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of Promoter_J23100_RBS_B0030

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powde
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of terminator_B0015

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powde
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of terminator_B1006

Purpose:

PCR amplification for gene_leudh and double enzyme digestion

Steps:

1. PCR amplification system for gene_leudh

2. Electrophoresis of PCR products of gene_leudh
3. Double enzyme digestion of gene_leudh

4. Cycle purity of digested gene_leudh

Product:

Digested gene_leudh

Purpose:

PCR amplification for gene_fdh and double enzyme digestion

Steps:

1. PCR amplification system for gene_fdh

2. Electrophoresis of PCR products of gene_fdh
3. Double enzyme digestion of gene_fdh

4. Cycle purity of digested gene_fdh

Product:

Digested gene_fdh

Purpose:

Make connection of gene and terminator

Steps:

1. Double enzyme digestion of gene and terminator_B0015
2. Electrophoresis analysis of double digested result of plasmid
3. Extract double digested gene
4. Cycle purity of digested terminator
5. Link gene with terminator under 16℃ for 8 hours
6. Transformation

7. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol
8. Extract the plasmids
9. Electrophoresis analysis of plasmids

Product:

plasmid of gene ldh and terminator

Purpose:

make connection of gene and terminator

Steps:

1. Double enzyme digestion of gene and terminator_B0015
2. Electrophoresis analysis of double digested result of plasmid
3. Extract double digested gene
4. Cycle purity of digested terminator
5. Link gene with terminator under 16℃ for 8 hours
6. Transformation

7. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol
8. Extract the plasmids
9. Electrophoresis analysis of plasmids

Product:

plasmid of gene fdh and terminator

Purpose:

make connection of gene and terminator

Steps:

1. Double enzyme digestion of gene and terminator_B1006
2. Electrophoresis analysis of double digested result of plasmid
3. Extract double digested gene
4. Cycle purity of digested terminator
5. Link gene with terminator under 16℃ for 8 hours
6. Transformation

7. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol
8. Extract the plasmids
9. Electrophoresis analysis of plasmids

Product:

plasmid of gene ldh and terminator

Purpose:

make connection of gene and terminator

Steps:

1. Double enzyme digestion of gene and terminator_B1006
2. Electrophoresis analysis of double digested result of plasmid
3. Extract double digested gene
4. Cycle purity of digested terminator
5. Link gene with terminator under 16℃ for 8 hours
6. Transformation

7. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol
8. Extract the plasmids
9. Electrophoresis analysis of plasmids

Product:

plasmid of gene and terminator

Purpose:

Ligation of isolated circuit with RBS_B0032 and gene_leudh

Steps:

1. Double enzyme digestion of Plac_B0032 and LeuDH_T.
2. Electrophoresis analysis of double digested result.

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours.
5. Transformation

6. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol.
7. Extract the plasmids.
8. Electrophoresis analysis of plasmids.

Product:

Isolated circuit with RBS_B0032 and gene_leudh

Purpose:

Ligation of isolated circuit with RBS_B0034 and gene_leudh

Steps:

1. Double enzyme digestion of Plac_B0034 and LeuDH_TT
2. Electrophoresis analysis of double digested result.

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours.
5. Transformation

6. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol.
7. Extract the plasmids
8. Electrophoresis analysis of plasmids

Product:

Isolated circuit with RBS_B0034 and gene_leudh

Purpose:

Ligation of isolated circuit with RBS_B0034 and gene_fdh

Steps:

1. Double enzyme digestion of Plac_B0032 and LeuDH_T
2. Electrophoresis analysis of double digested result

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours.
5. Transformation

6. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol.
7. Extract the plasmids.
8. Electrophoresis analysis of plasmids.

Product:

Isolated circuit with RBS_B0034 and gene_fdh

Purpose:

Ligation of isolated circuit with RBS_B0030 and gene_leudh

Steps:

1. Double enzyme digestion of P_J23100_B0030 and LeuDH_T
2. Electrophoresis analysis of double digested result.

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours.
5. Transformation

7. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol.
8. Extract the plasmids.
9. Electrophoresis analysis of plasmids.

Product:

Isolated circuit with RBS_B0030 and gene_leudh

Purpose:

Ligation of promoter and RBS_B0032

Steps:

1. Double enzyme digestion of P_lac and RBS_B0032
2. Electrophoresis analysis of double digested result of plasmid

3. Extract double digested promoter LacI
4. Cycle purity of digested rbs_B0032
5. Link promoter with rbs under 16℃ for 8 hours
6. transformation

7. Pick 10 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of amp
8. Extract the plasmids
9. Electrophoresis analysis of plasmids

Product:

Plasmid of LacI linked with RBS_B0032

Purpose:

Ligation of the final circuit with RBS_B0032

Steps:

1. Double enzyme digestion of circuits with RBS_B0032_gene_leudh and RBS_B0034_gene_fdh.
2. Electrophoresis analysis of double digested result.

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours
5. Transformation

6. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol. Culture at 37℃,200rpm for 12~14 hours.
7. Extract the plasmids.
8. Electrophoresis analysis of plasmids.
9. Verify the results by double enzyme digestion.

Product:

Final circuit of RBS_B0032

Purpose:

Ligation of the final circuit with RBS_B0034

Steps:

1. Double enzyme digestion of circuit with RBS_B0034_gene_leudh and RBS_B0034_gene_fdh.
2. Electrophoresis analysis of double digested result.

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours.
5. Transformation

6. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol. Culture at 37℃,200rpm for 12~14 hours.
7. Extract the plasmids.
8. Electrophoresis analysis of plasmids.

9. Verify the results by double enzyme digestion.

Product:

Final circuit of RBS_B0034

Purpose:

Ligation of the final circuit with RBS_B0030

Steps:

1. Double enzyme digestion of circuit with RBS_B0030_gene_leudh and RBS_B0034_gene_fdh.
2. Electrophoresis analysis of double digested result

3. Extract double digested products.
4. Ligate under 16℃ for 8 hours.
5. Transformation

6. Pick 8 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of chloramphenicol. Culture at 37℃,200rpm for 12~14 hours.
7. Extract the plasmids.
8. Electrophoresis analysis of plasmids.

9. Verify the results by double enzyme digestion.

Product:

Final circuit of RBS_B0030

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powder
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of LacI_RBS_B0034

Purpose:

Extract plasmid from dry powder

Steps:

1. Add 20μl ddH₂O to solve the dry powde
2. Suck 10μl of plasmid into 50μl of competent cell for transformation

3. Pick a single colony from the agar plate using a sterile pipette tip.
4. Culture at 10ml LB of chloramphenicol for 12h, 37℃, 200rpm
5. Plasmid Extraction

Product:

Plasmid of Promoter_J23100_RBS_B0030

Purpose:

Make connection of promoter and rbs

Steps:

1. Double enzyme digestion of promoter_J23100 and RBS_B0034
2. Cycle purity of digested products
3. Link promoter with rbs under 16℃ for 8 hours
4. Transformation

5. Pick 10 single colonies from the agar plate using sterile pipette tips. Put it into 10ml LB of amp
6. Extract the plasmids
7. Electrophoresis analysis of plasmids

Product:

Plasmid of promoter J23100 linked with RBS_B0034

NOTEBOOK

Initially, they used isolated enzymes, which can be disadvantageous for the reason that enzymes are always destabilized in the isolation and purification process. What's more, the cofactor NADH is rather an expensive raw material, which will enhance the cost of L-tert-leucine production. So scientists introduced whole-cell biocatalysts to L-tert-leucine production. Whole-cell biocatalysts could stabilize enzymes and reduce the addition level of cofactor NADH.

In the path of building our biobricks, we divided the circuits into two modules. One is promoter linked with RBS and the other is gene linked with terminator. The dendrogram below is our experiments detail. Click each bottom for more information.