Difference between revisions of "Team:Korea U Seoul/Notebook/content"
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Revision as of 13:45, 18 September 2015
1st meeting
- Study software projects of previous iGEM teams
2nd meeting
- Recruit more team members
- Start to run three sub-teams: data processing, web development, and wetlab experiment
3rd meeting
- Allocate roles of each team member
- Make meeting schedules and plans
4th meeting
- Study about iGEM and synthetic biology for newcomers
- Study previous gold medal projects
5th meeting
- Study the program “eQuilibrator”
- Start to learn computational tools to deal with synthetic design of biochemical pathways and networks
6th meeting
- Download KEGG database
- Study about the concept of RPair of KEGG
- Design our team logo
7th Meeting
- Start to study visualization tools
- Make funding plan for the project
- Plan for a science day event for Human Practices
8th Meeting
- Continue to try to visualize toy network model
- Continue to construct networks of whole reactions and compounds
- Study about vector design
- Prepare to apply for CCP in Korea University
9th Meeting
- Analyze code of vector design from the project of SYSU-Software 2014
- Continue to construct database and develop web application
-Brainstorm topics for an experiment: Pine wilt disease, Allergen production, Luciferase for Art and Design, Photo induction >> Litography : team experiment
10th Meeting
- Continue to analyze code of vector design from the project of SYSU-Software 2014
- Continue to construct database and develop web application
-Search example pathways for program testing
11th Meeting
- Continue to construct database and develop web application
- Share the example pathway each member found
-Study how to write in JSON format and use it
12th Meeting
- Contact school departments and bio-corporations for funding
- Continue to construct database and develop web application
13th Meeting
- Study how to use D3.js
- Convert network data into JSON
- Study how to apply eQuilibrator to the project
14th Meeting
- Convert data into JSON
- Apply eQuilibrator data to our toy model
- Make brochure for funding
- Study the Judging Handbook
15th Meeting
- Create and share a ‘to do list’ of each sub-team, and set priority among those items
- Apply and check example pathways
- Look for the way to apply KEGG Atlas information to our project
Determine which information of reactions and compounds add to our program
Study the Judging Handbook
Write project description!
16th Meeting
- Read articles to set pathway criteria
- Add E. coli K-12 gene data
- Write code to apply thermodynamic data
Modify graph on web and design
17th Meeting
- Study and determine which cofactors would be added among four types of criteria
- Apply the code that calculate Gibbs energy to the toy model
-Modify input boxes of web application
Submit CCP mid-report
Choose a subtitle for web application
18st Network Meeting
- Modify python scripts
- Study and determine which cofactors would be added among four types of criteria
- Add polarity of reactions to the database
19nd Meeting
- Calculate the differences of ATP, NADP, NADPH, CO2 of each reactions
- Add thermodynamic data to our software
- Modify web design of the software
- Register for Giant Jamboree!
20rd Meeting
- Write a conti for our program tutorial
- Change KEGG IDs into chemical names
21st Meeting
- Make the tutorial
- Add glycan data to the database
22nd Meeting
- Design the banner for the Giant Jamboree
- Send mails asking a collaboration to wetlab teams
- Plan for a survey and a lecture for Human Practices
23rd Meeting
- Try to add up to two-degree compounds to each node
- Modify the web application
24rd Meeting
- Start to write wiki contents
- Start to prepare for the presentation
Study API, GitHub, et cetera.