Difference between revisions of "Team:NYU Shanghai/Protocols"

 
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     <br><br><br>
 
     <br><br><br>
 
     <h6><font color="#d66">Building our Construct: from IDT gBlocks</font></h6>
 
     <h6><font color="#d66">Building our Construct: from IDT gBlocks</font></h6>
 +
    <p>Note: We recommend adding a reporter gene to the construct.</p>
 
     <br><img src="https://static.igem.org/mediawiki/2015/7/71/NYU_Shanghai_IDTprocedure.png" width="550">
 
     <br><img src="https://static.igem.org/mediawiki/2015/7/71/NYU_Shanghai_IDTprocedure.png" width="550">
 
     <br><br><br>
 
     <br><br><br>
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     <tr>
 
     <tr>
 
           <td><font color="#d66">Initial Denaturation</font></td>
 
           <td><font color="#d66">Initial Denaturation</font></td>
           <td><font color="#d66">98C</font></td>
+
           <td>98C</td>
           <td><font color="#d66">30s</font></td>
+
           <td>30s</td>
 
       </tr>
 
       </tr>
 
       <tr>
 
       <tr>
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       </tr>
 
       </tr>
 
       <tr>
 
       <tr>
           <td>Final Extension</td>
+
           <td><font color="#d66">Final Extension</font></td>
 
           <td>72C</td>
 
           <td>72C</td>
 
           <td>2m</td>
 
           <td>2m</td>
 
       </tr>
 
       </tr>
 
       <tr>
 
       <tr>
           <td>Hold</td>
+
           <td><font color="#d66">Hold</font></td>
 
           <td>4C</td>
 
           <td>4C</td>
 
           <td></td>
 
           <td></td>

Latest revision as of 16:56, 18 September 2015

Protocols

We built our constructs from pre-made biobrick parts. Our overall conclusion is that 3A assembly is generally inefficient, and an insufficient method for adding small parts (such as a terminator) to a larger construction within pSB1C3. We learned that ratios were extremely important in the process of 3A Assembly, and we made a summary sheet of the equations we used in pre-digest and pre-ligation that accounts for digest dilution and amount needed to ensure results are seen on a gel, not just ligation ratios. We wished we used gibson assembly.


Making Color

Recipes

3A Assembly

Calculations (pdf)