Difference between revisions of "Team:Aachen/Lab/Glycogen"

Line 23: Line 23:
  
 
==Our approach==
 
==Our approach==
To pave the way for an industrial process, we need to modify ''E.&nbsp;coli'' to produce high concentrations of glycogen. It has previously been shown that a knockout of one glycogen degradation enzyme leads to the accumulation of glycogen in the cells (Fig. 2)<ref> name="2"Alonso-Casaju´s Nora et al. 2006. Glycogen Phosphorylase, the Product of the glgP Gene, Catalyzes Glycogen Breakdown by Removing Glucose Units from the Nonreducing Ends in Escherichia coli</ref>. To further improve the production of glycogen in ''E.&nbsp;coli'', we approached this problem in our project in two ways:  
+
To pave the way for an industrial process, we need to modify ''E.&nbsp;coli'' to produce high concentrations of glycogen. It has previously been shown that a knockout of one glycogen degradation enzyme leads to the accumulation of glycogen in the cells (Fig. 2)<ref name="2"> Alonso-Casaju´s Nora et al. 2006. Glycogen Phosphorylase, the Product of the glgP Gene, Catalyzes Glycogen Breakdown by Removing Glucose Units from the Nonreducing Ends in Escherichia coli<ref name="2" />. To further improve the production of glycogen in ''E.&nbsp;coli'', we approached this problem in our project in two ways:  
  
  
Line 32: Line 32:
  
  
{{Team:Aachen/DoubleFigure|Aachen_glycogen metabolism adjusted.png|Aachen Glyogen accumulation of ∆glgP.png|title1= Figure 1 - Glycogen enzymes in ''E. coli'' |title2=Figure 2 - ∆''glgP'' ''E. coli'' cells|subtitle1=GlgC forms ADP-glucose from ATP and glucose-1-phosphate. The ADP-glucose is then used by GlgA which also serves as the starting particle through autophosphorylation. GlgB adds branches to the existing chains forming α-1,6-glycosidic bonds. GlgX degrades glycogen by cleaving α-1,6-glycosidic bonds whereas GlgP removes glucose units from the end of linear chains.|subtitle2= ''E. coli'' cells lacking ''glgP'' are shown. They accumulated glycogen in granules. By Alonso-Casaju´s Nora et al. 2006 <ref> name="2"Alonso-Casaju´s Nora et al. 2006. Glycogen Phosphorylase, the Product of the glgP Gene, Catalyzes Glycogen Breakdown by Removing Glucose Units from the Nonreducing Ends in Escherichia coli</ref>|size=large}}
+
{{Team:Aachen/DoubleFigure|Aachen_glycogen metabolism adjusted.png|Aachen Glyogen accumulation of ∆glgP.png|title1= Figure 1 - Glycogen enzymes in ''E. coli'' |title2=Figure 2 - ∆''glgP'' ''E. coli'' cells|subtitle1=GlgC forms ADP-glucose from ATP and glucose-1-phosphate. The ADP-glucose is then used by GlgA which also serves as the starting particle through autophosphorylation. GlgB adds branches to the existing chains forming α-1,6-glycosidic bonds. GlgX degrades glycogen by cleaving α-1,6-glycosidic bonds whereas GlgP removes glucose units from the end of linear chains.|subtitle2= ''E. coli'' cells lacking ''glgP'' are shown. They accumulated glycogen in granules. By Alonso-Casaju´s Nora et al. 2006 <ref name="2">Alonso-Casaju´s Nora et al. 2006. Glycogen Phosphorylase, the Product of the glgP Gene, Catalyzes Glycogen Breakdown by Removing Glucose Units from the Nonreducing Ends in Escherichia coli<ref name="2" />|size=large}}
  
 
<span style="color:transparent">a</span>
 
<span style="color:transparent">a</span>

Revision as of 00:06, 19 September 2015


a

Learn more

a

When a bioprocess is developed in the lab, glucose is a popular choice for a carbon source. Even for industrial processes, sugars in general remain the number one substrate.[1]

While some processes will be adapted to methanol as the carbon source, most existing processes will still rely on sugars as these are well established and laborous to change.

By converting renewable methanol to glycogen, the bacterial equivalent to starch, we will provide a universal carbon source, connecting many existing bioprocesses to a sustainable substrate.


Our approach

To pave the way for an industrial process, we need to modify E. coli to produce high concentrations of glycogen. It has previously been shown that a knockout of one glycogen degradation enzyme leads to the accumulation of glycogen in the cells (Fig. 2)Cite error: Invalid <ref> tag;

name cannot be a simple integer. Use a descriptive title
  1. Liu S. 2013. Bioprocess Engineering: Kinetics, Sustainability, and Reactor Design.