Difference between revisions of "Team:DTU-Denmark"

 
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           </button>
 
           </button>
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           <a class="navbar-brand navimg" href="#"><img src="/wiki/images/b/b7/DTU-Denmark_dtulogo.png"></a>
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           <a class="navbar-brand navimg" href="#"><img src="https://static.igem.org/mediawiki/2015/b/b7/DTU-Denmark_dtulogo.png"></a>
 
         </div>
 
         </div>
 
         <!-- Collect the nav links, forms, and other content for toggling -->
 
         <!-- Collect the nav links, forms, and other content for toggling -->
 
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         <div class="collapse navbar-collapse" id="nav-collapse">
 
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           <ul class="nav navbar-nav">
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<li class="dropdown active">
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                <li class="active">
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<a href="/Team:DTU-Denmark"
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                <a href="/Team:DTU-Denmark"
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  >Home
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                  >Home
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                                          </a></li>
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                  </a></li>
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<li class="dropdown">
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                <li  
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<a href="/Team:DTU-Denmark"
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  class="dropdown-toggle"
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  data-toggle="dropdown"
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  aria-expanded="false">Team and Attributions
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                                          <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
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                >
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<li class="dropdown">
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                <a href=""
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<a href="/Team:DTU-Denmark/Team"
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                  class="dropdown-toggle"
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  >Team
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                  data-toggle="dropdown"
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                                          </a></li>
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                  role="button"
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<li class="dropdown">
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                  aria-expanded="false">Team and Attributions
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<a href="/Team:DTU-Denmark/Attributions"
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                  <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
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  >Attributions
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                <li >
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                                          </a></li></ul></li>
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                <a href="/Team:DTU-Denmark/Team"
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<li class="dropdown">
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                  >Team
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<a href="/Team:DTU-Denmark"
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                  </a></li>
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  class="dropdown-toggle"
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                <li >
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  data-toggle="dropdown"
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                <a href="/Team:DTU-Denmark/Attributions"
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  role="button"
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                  >Attributions
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  aria-expanded="false">Project
+
                  </a></li></ul></li>
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                                          <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
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                <li  
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<li class="dropdown">
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<a href="/Team:DTU-Denmark/Project/Overview"
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  >Overview
+
               
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                                          </a></li>
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−
<li class="dropdown">
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<a href="/Team:DTU-Denmark/Project/Background"
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  >Background
+
               
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                                          </a></li>
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−
<li class="dropdown">
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<a href="/Team:DTU-Denmark/Project/MAGE"
+
                   
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  >MAGE Subtilis
+
               
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                                          </a></li>
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<li class="dropdown">
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<a href="/Team:DTU-Denmark/Project/Surfactin"
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  >Surfactin
+
               
−
                                          </a></li>
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                >
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<li class="dropdown">
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                <a href=""
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<a href="/Team:DTU-Denmark/Project/Tyrocidine"
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                  class="dropdown-toggle"
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  >Tyrocidine
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                  data-toggle="dropdown"
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                                          </a></li>
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                  role="button"
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<li class="dropdown">
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                  aria-expanded="false">Project
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<a href="/Team:DTU-Denmark/Project/Chip"
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                  <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
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  >Lab-on-a-disc
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                <li >
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                                          </a></li>
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                <a href="/Team:DTU-Denmark/Project/Overview"
−
<li class="dropdown">
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                  >Overview
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<a href="/Team:DTU-Denmark/Project/Intein"
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                  </a></li>
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  >Intein
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                <li >
−
                                          </a></li>
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                <a href="/Team:DTU-Denmark/Project/Background"
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<li class="dropdown">
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                  >Background
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<a href="/Team:DTU-Denmark/Project/Detection"
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                  </a></li>
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  >Detection of NRP
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                <li >
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                                          </a></li></ul></li>
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                <a href="/Team:DTU-Denmark/Project/MAGE"
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<li class="dropdown">
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                  >MAGE subtilis
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<a href="/Team:DTU-Denmark/Practices"
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                  </a></li>
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  >Human Practices
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                <li >
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                                          </a></li>
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                <a href="/Team:DTU-Denmark/Project/Tyrocidine"
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<li class="dropdown">
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                  >Tyrocidine
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<a href="/Team:DTU-Denmark/Part_Collection"
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                  </a></li>
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  >Parts
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                <li >
−
                                          </a></li>
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                <a href="/Team:DTU-Denmark/Project/Chip"
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<li class="dropdown">
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                  >Lab-on-a-disc
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<a href="/Team:DTU-Denmark/Journal"
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                  </a></li>
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  >Journal
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                <li >
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                                          </a></li>
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                <a href="/Team:DTU-Denmark/Project/Inteins"
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<li class="dropdown">
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                  >Inteins
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<a href="/Team:DTU-Denmark/Software"
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                  </a></li>
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  >Software
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                <li >
−
                                          </a></li>
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                <a href="/Team:DTU-Denmark/Project/Detection"
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<li class="dropdown">
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                  >Detection of NRP
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<a href="/Team:DTU-Denmark"
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                  </a></li></ul></li>
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  class="dropdown-toggle"
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                <li >
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  data-toggle="dropdown"
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                <a href="/Team:DTU-Denmark/Practices"
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  role="button"
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                  >Human Practices
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  aria-expanded="false">Achievements
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                  </a></li>
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                                          <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
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                <li
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<li class="dropdown">
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<a href="/Team:DTU-Denmark/Achievements"
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  >Overview of Achievements
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                                          </a></li>
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<a href="/Team:DTU-Denmark/Collaborations"
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                >
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  >Collaborations
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                <a href=""
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                  class="dropdown-toggle"
−
<li class="dropdown">
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                  data-toggle="dropdown"
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<a href="/Team:DTU-Denmark/Judging%20Form"
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                  role="button"
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  >Judging Form
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                  aria-expanded="false">Parts Collection
−
                                          </a></li></ul></li>
+
                  <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Parts"
 +
                  >Parts
 +
                  </a></li>
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Description"
 +
                  >Characterisation of xylR
 +
                  </a></li></ul></li>
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Journal"
 +
                  >Journal
 +
                  </a></li>
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Software"
 +
                  >Software
 +
                  </a></li>
 +
                <li  
 +
               
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                >
 +
                <a href=""
 +
                  class="dropdown-toggle"
 +
                  data-toggle="dropdown"
 +
                  role="button"
 +
                  aria-expanded="false">Achievements
 +
                  <span class="caret"></span></a><ul class="dropdown-menu" role="menu">
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Achievements"
 +
                  >Key Achievements
 +
                  </a></li>
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Collaborations"
 +
                  >Collaborations
 +
                  </a></li>
 +
                <li >
 +
                <a href="/Team:DTU-Denmark/Judging_Form"
 +
                  >Judging Form
 +
                  </a></li></ul></li>
 
             <li class="hidden-xs">
 
             <li class="hidden-xs">
 
               <a href="http://facebook.com/dtubiobuilders" data-toggle="tooltip" data-placement="bottom" title="Follow us on Facebook">
 
               <a href="http://facebook.com/dtubiobuilders" data-toggle="tooltip" data-placement="bottom" title="Follow us on Facebook">
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               <a href="https://igem.org" target="_blank" class="navimg">
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                 <img src="/wiki/images/a/af/DTU-Denmark_igemlogo.png">
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       </div>
 
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     </nav>
 
     </nav>
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    <nav class="navbar navbar-default extrabar hidden-xs hidden" data-spy="affix">
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          <li><a class="page-scroll" href="#Project-description">Project description</a></li><li><a class="page-scroll" href="#Social-Media">Social Media</a></li><li><a class="page-scroll" href="#Overview">Overview</a></li><li><a class="page-scroll" href="#Sitemap">Sitemap</a></li>
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  <div class="container-fluid" id="scrollspy">
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        </ul>
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    <ul class="nav navbar-nav">
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      <li><a class="page-scroll" href="#ProjectDescription">Project Description</a></li><li><a class="page-scroll" href="#SocialMedia">Social Media</a></li>
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    </ul>
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    <div class="jumbotron hero bg-hero">
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         <a href="https://igem.org" target="_blank">
−
           <img src="/wiki/images/a/af/DTU-Denmark_igemlogo.png">
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           <div class="col-md-12">
 
           <div class="col-md-12">
 
              
 
              
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            <h3>Technical University of Denmark</h3>
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<h3>Technical University of Denmark</h3>
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            <h1>The Synthesizer</h1>
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<h1>The Synthesizer</h1>
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               <li>
 
               <li>
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                 <a id="Project-description-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#Project-description">Project description</a>
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                <a id="Social-Media-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#Social-Media">Social Media</a>
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                <a id="Overview-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#Overview">Overview</a>
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               </li>
 
               </li>
 
                
 
                
 
               <li>
 
               <li>
−
                 <a id="Sitemap-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#Sitemap">Sitemap</a>
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                 <a id="SocialMedia-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#SocialMedia">Social Media</a>
 
               </li>
 
               </li>
 
                
 
                
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                 <a id="Project-description-submenu" class="page-scroll" href="#Project-description">Project description</a>
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                 <a id="ProjectDescription-submenu" class="page-scroll" href="#ProjectDescription">Project Description</a>
 
               </li>
 
               </li>
 
                
 
                
 
               <li>
 
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                 <a id="Social-Media-submenu" class="page-scroll" href="#Social-Media">Social Media</a>
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                 <a id="SocialMedia-submenu" class="page-scroll" href="#SocialMedia">Social Media</a>
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                <a id="Overview-submenu" class="page-scroll" href="#Overview">Overview</a>
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<p style="text-align: center;">Tune in and listen to The Synthesizers podcast explaining our project in 20 seconds, 5 minutes, or 10 minutes</p>
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<p style="text-align: center;">Listen to our podcast about our <a href="https://static.igem.org/mediawiki/2015/5/50/Podcast_project.mp4"><em>Project</em></a>&nbsp;or&nbsp;<a href="https://static.igem.org/mediawiki/2015/f/f5/Podcast_education.mp4"><em>Human practises</em></a></p>
  
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<p>Non-ribosomal peptides have important anti-bacterial, anti-cancer, and immunosuppressive biological activities. They are synthesized by modular, high molecular weight enzymes that assemble more than 500 different amino acid substrates in an assembly line manner. For this reason, synthetic biologists have tried to engineer these proteins and to switch modules to create analogs and novel natural products, but with little success. Despite being modular, the interactions between modules have evolved to be highly specific, making synthetic Non-Ribosomal Peptide Synthases (NRPS) a challenge to engineer. Instead of switching modules we introduced a recombination system targeting oligo integration in Bacillus subtilis. We used the recombineering system to alter the active sites determining substrate specificity, thereby creating variants of antibiotics. Our focus was the tyrocidine antibiotic, which cannot be used intravenously due to its toxicity. Our goal is to create new analogs through multiplex automated genome engineering to reduce toxicity.</p>
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DTU Denmark received a gold medal at the Giant Jamboree in Boston 2015 and a nomination for best educational human practises. Click on the headphones to hear our podcasts explaining our project and our human practises.</p>
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<p>We also designed a <a href="https://2015.igem.org/Team:DTU-Denmark/Software">Wiki Wizard</a> that allows you to easily create and design wikis without knowing about HTML, CSS, and JavaScript. By using the shared editing mode, team members can edit the Wiki at the same time - just like Google Docs.</p>
  
 
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<p>Nonribosomal peptides have important anti-bacterial, anti-cancer, and immunosuppressive biological activities. They are synthesized by modular, high molecular weight enzymes that assemble more than 500 different amino acid substrates in an assembly line manner. For this reason, synthetic biologists have tried to engineer these proteins and to switch modules to create analogs and novel natural products, but with little success. Despite being modular, the interactions between modules have evolved to be highly specific, making synthetic Non-Ribosomal Peptide Synthases (NRPS) a challenge to engineer. Instead of switching modules we introduced a recombination system targeting oligo integration in Bacillus subtilis. We used the recombineering system to alter the active sites determining substrate specificity, thereby creating variants of antibiotics. Our focus was the tyrocidine antibiotic, which cannot be used intravenously due to its toxicity. Our goal is to create new analogs through multiplex automated genome engineering to reduce toxicity.</p>
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<p style="text-align: center;"><img alt="" src="https://static.igem.org/mediawiki/2015/7/7d/DTU-Denmark_drawingpng.png" style="width: 625px; height: 378px;" /></p>
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Latest revision as of 23:51, 20 November 2015

Technical University of Denmark

The Synthesizer

Scroll down for more

Project Description

Listen to our podcast about our Project or Human practises

 


DTU Denmark received a gold medal at the Giant Jamboree in Boston 2015 and a nomination for best educational human practises. Click on the headphones to hear our podcasts explaining our project and our human practises.

We also designed a Wiki Wizard that allows you to easily create and design wikis without knowing about HTML, CSS, and JavaScript. By using the shared editing mode, team members can edit the Wiki at the same time - just like Google Docs.

 

Nonribosomal peptides have important anti-bacterial, anti-cancer, and immunosuppressive biological activities. They are synthesized by modular, high molecular weight enzymes that assemble more than 500 different amino acid substrates in an assembly line manner. For this reason, synthetic biologists have tried to engineer these proteins and to switch modules to create analogs and novel natural products, but with little success. Despite being modular, the interactions between modules have evolved to be highly specific, making synthetic Non-Ribosomal Peptide Synthases (NRPS) a challenge to engineer. Instead of switching modules we introduced a recombination system targeting oligo integration in Bacillus subtilis. We used the recombineering system to alter the active sites determining substrate specificity, thereby creating variants of antibiotics. Our focus was the tyrocidine antibiotic, which cannot be used intravenously due to its toxicity. Our goal is to create new analogs through multiplex automated genome engineering to reduce toxicity.

 

Social Media

DTU Biobuilders
Technical University of Denmark
Department of Systems Biology
Søltofts Plads 221
2800 Kgs. Lyngby
Denmark
P: +45 45 25 25 25
M: dtu-igem-2015@googlegroups.com