Difference between revisions of "Team:Genspace/Parts"

 
(One intermediate revision by the same user not shown)
Line 20: Line 20:
 
       </style>
 
       </style>
 
        
 
        
       <style type="text/css">
+
        
        #content{width:100%}#page{margin:auto;float:none;z-index:1;position:relative;padding:160px 15px 0;}#page a{color:#1fae6b;background-color:#fff}#page a:hover{color:#1a8a55}.clear{clear:both;height:0}.gal{display:inline-block}html{position:relative;min-height:100%}body{margin-bottom:60px}h1,h2{text-decoration:none}.footer{display:none;position:fixed;bottom:0;width:100%;height:60px;background-color:#f5f5f5}@media only screen and (max-width:992px){.container{width:95%}}@media only screen and (max-width:767px){.container{width:95%}}.navbar-default{padding-top:16px}.container>.navbar-header{width:100%;min-height:80px}.navbar>.container .navbar-brand{padding-top:8px}.navbar-default{background-color:#fff;border-color:#e7e7e7}.navbar-default .navbar-nav>li>a:hover{color:#1fae6b}.navbar-toggle{float:left;margin-left:8px}@media only screen and (max-width:992px){.nav.navbar-nav{width:90%}}.nav>li>a{position:relative;display:block;color:#1fae6b;text-transform:uppercase;padding:10px;font-size:14px;}@media only screen and (max-width:1200px){.nav>li>a{padding:5px;font-size:13px}}.nav>li>a:hover{color:#1a8a55}.navbar-header img.genspace{width:260px;max-width:50%;margin:10px 0 10px 10px;}@media only screen and (max-width:767px){.navbar-header img.genspace{margin:10px}}.navbar-header .navbar-brand{float:right;}@media only screen and (max-width:767px){.navbar-header .navbar-brand{padding:5px}}.navbar-header .navbar-brand #logo{width:100px;max-width:100px;height:auto;}@media only screen and (max-width:767px){.navbar-header .navbar-brand #logo{width:80px;height:80px}}h2.lead{font-size:22px}h4{margin:20px 0;}h4 .lead{font-size:16px;}@media only screen and (max-width:1200px){h4 .lead{font-size:14px}}.lead{font-size:21px;}@media only screen and (max-width:1200px){.lead{font-size:18px}}body{margin:0;padding:0;width:100%}ul li{list-style:none}.underline{text-decoration:underline}.strike{text-decoration:line-through}.container .text-muted{margin:20px 0;color:#e7e7e7}.footer > .container{padding-right:15px;padding-left:15px}code{font-size:80%}.green{color:#1fae6b}.section{padding:20px;margin:30px 0;display:block}.background{background-color:rgba(255,255,255,0.8);position:fixed;width:100%;height:100%;top:0}.mapBackground{background:url("https://static.igem.org/mediawiki/2015/5/55/Gowanus_canal.jpg");background-size:cover;position:fixed;top:0;width:100%;height:100%}.teamBackground{background:url("https://static.igem.org/mediawiki/2015/6/6d/Genspace_teamphoto_web.jpg");background-position:center center;background-repeat:no-repeat;background-size:cover;position:absolute;top:0;width:100%;height:100%}.banner{display:block;width:100%;height:65%}#page.home .row{margin:30px 0}#mapimg,#map{z-index:0;position:fixed;top:0;width:100%;display:none}.showMap #mapimg,.showMap #map{display:block;position:absolute}video{width:100%;height:640px;}@media only screen and (max-width:1200px){video{height:640px}}@media only screen and (max-width:990px){video{height:480px}}svg .outline,svg .sites{opacity:0}svg .outline{fill:#1fae6b;stroke:#1a8a55}svg.showOutline .outline{opacity:.1}svg.showOutline .sites{opacity:1}.dropdown-menu{text-transform:capitalize}.expand>.dropdown-menu{display:block}.heading{border-bottom:2px solid #e7e7e7;padding:10px 0;text-transform:capitalize}img.bio{width:100%}.row{z-index:1;position:relative;}.row img.genspace{max-width:420px;margin-bottom:20px}.row.intro img{width:100%;max-width:600px;}@media only screen and (max-width:992px){.row.intro img{margin:20px auto;display:block}}.teamIntro{width:95%;margin:auto}.team.container{padding-top:0}.team .member .lead{text-transform:capitalize}.parts ul{margin:60px 30px 60px 0}.parts .row{background-color:rgba(255,255,255,0.8);z-index:0;position:relative;border-top:0 solid #c7c7c7;margin:40px 0 80px}.parts .header{margin:0;background-color:rgba(255,255,255,0);border-top:0 solid #c7c7c7}.parts .partType{font-size:18px;font-weight:700;padding-top:40px;text-align:left}.parts .section{margin:20px}.parts svg{pointer-events:none}.construct-map{transform:scale(1.3) translate(-50px,20px);}@media only screen and (max-width:1200px){.construct-map{transform:scale(1.2) translate(-70px,20px)}}table{margin:30px 40px;width:90%;font-size:.98em;}table td.col{text-align:center}table tr:first-child{border-bottom:1px solid #373737}table td.col1,table td.col4{text-align:left}table .col2{font-size:32px}table .col3{padding:0 10px}table .col4{width:30%}table .header .col2{font-size:.99em;}@media only screen and (max-width:767px){table .header .col2{font-size:.98em}}table .header td.col{font-size:1em;font-weight:700}#page .partNav.lead{padding:5px;font-size:1em}.weekNav.lead{padding:5px;font-size:16px}.week{margin:0 0 20px;padding:0 0 60px;border-bottom:2px solid #c7c7c7;}.week .header{margin:20px}.week .section{background-color:rgba(255,255,255,0.8);padding:20px;margin:0;}.week .section img{width:100%;margin:20px auto;display:block;}.week .section img.small{max-width:500px}.week .section img.col2{margin:20px 1%;max-width:46%;float:left}.fancybox{padding:0}.gal{margin-bottom:20px;}.gal .caption{width:100%;font-size:14px;margin-top:-40px}.quote{width:80%;margin-left:5%}.human .section,.colab .section,.safety .section,.attributions .section{background-color:rgba(255,255,255,0.8);padding:20px;margin:40px 0;}.human .section:first-child,.colab .section:first-child,.safety .section:first-child,.attributions .section:first-child{margin:0}.human .section .lead,.colab .section .lead,.safety .section .lead,.attributions .section .lead{font-size:16px}.human .section img,.colab .section img,.safety .section img,.attributions .section img{width:100%;margin:40px auto;display:block;}.human .section img.small,.colab .section img.small,.safety .section img.small,.attributions .section img.small{max-width:500px}.human .section img.col2,.colab .section img.col2,.safety .section img.col2,.attributions .section img.col2{margin:20px 1%;max-width:46%;float:left}.human .section img.col3,.colab .section img.col3,.safety .section img.col3,.attributions .section img.col3{margin:20px .5%;max-width:32%;float:left}.human .practice .lead{margin-bottom:10px}.attributions .member{width:100%;margin:10px 0;display:inline-block}.attributions p{margin:0;line-height:18px;width:auto}.attributions .name{float:left;width:25%;}@media only screen and (max-width:767px){.attributions .name{width:30%}}.attributions .attribution{width:65%;text-transform:capitalize;float:left}/*# sourceMappingURL=index.css.map */
+
        <style>
      </style>
+
          #content{width:100%}#page{margin:auto;float:none;z-index:1;position:relative;padding:160px 15px 0;}#page.safety{padding:60px 15px 0}#page a{color:#1fae6b;background-color:#fff}#page a:hover{color:#1a8a55}.clear{clear:both;height:0}.gal{display:inline-block}.gallery{background:#fff;}.gallery div{width:100%;margin:auto;}.gallery div img{display:block;width:100%}html{position:relative;min-height:100%}body{margin-bottom:60px}h1,h2{text-decoration:none;border-bottom:0}.footer{display:none;position:fixed;bottom:0;width:100%;height:60px;background-color:#f5f5f5}@media only screen and (max-width:992px){.container{width:95%}}@media only screen and (max-width:767px){.container{width:95%}}.navbar-default{padding-top:16px}.container>.navbar-header{width:100%;min-height:80px}.navbar>.container .navbar-brand{padding-top:8px}.navbar-default{background-color:#fff;border-color:#e7e7e7}.navbar-default .navbar-nav>li>a:hover{color:#1fae6b}.navbar-toggle{float:left;margin-left:8px}@media only screen and (max-width:992px){.nav.navbar-nav{width:90%}}.nav>li>a{position:relative;display:block;color:#1fae6b;text-transform:uppercase;padding:10px;font-size:14px;}@media only screen and (max-width:1200px){.nav>li>a{padding:5px;font-size:13px}}.nav>li>a:hover{color:#1a8a55}.navbar-header img.genspace{width:260px;max-width:50%;margin:10px 0 10px 10px;}@media only screen and (max-width:767px){.navbar-header img.genspace{margin:10px}}.navbar-header .navbar-brand{float:right;}@media only screen and (max-width:767px){.navbar-header .navbar-brand{padding:5px}}.navbar-header .navbar-brand #logo{width:100px;max-width:100px;height:auto;}@media only screen and (max-width:767px){.navbar-header .navbar-brand #logo{width:80px;height:80px}}h2.lead{font-size:22px}h4{margin:20px 0;}h4 .lead{font-size:16px;}@media only screen and (max-width:1200px){h4 .lead{font-size:14px}}.lead{font-size:21px;}@media only screen and (max-width:1200px){.lead{font-size:18px}}body{margin:0;padding:0;width:100%}ul li{list-style:none}.underline{text-decoration:underline}.strike{text-decoration:line-through}.container .text-muted{margin:20px 0;color:#e7e7e7}.footer > .container{padding-right:15px;padding-left:15px}code{font-size:80%}.green{color:#1fae6b}.section{padding:20px;margin:30px 0;display:block}.background{background-color:rgba(255,255,255,0.8);position:fixed;width:100%;height:100%;top:0}.mapBackground{background:url("https://static.igem.org/mediawiki/2015/5/55/Gowanus_canal.jpg");background-size:cover;position:fixed;top:0;width:100%;height:100%}.teamBackground{background:url("https://static.igem.org/mediawiki/2015/6/6d/Genspace_teamphoto_web.jpg");background-position:center center;background-repeat:no-repeat;background-size:cover;position:absolute;top:0;width:100%;height:100%}.banner{display:block;width:100%;height:65%}#page.home .row{margin:30px 0;}#page.home .row .section{margin:30px 0;background-color:rgba(255,255,255,0.8)}#mapimg,#map{z-index:0;position:fixed;top:0;width:100%;display:none}.showMap #mapimg,.showMap #map{display:block;position:absolute}video{margin:auto;display:block;height:640px;}@media only screen and (max-width:1200px){video{width:80%;height:640px}}@media only screen and (max-width:990px){video{height:480px}}p.video{text-align:center}svg .outline,svg .sites{opacity:0}svg .outline{fill:#1fae6b;stroke:#1a8a55}svg.showOutline .outline{opacity:.1}svg.showOutline .sites{opacity:1}.dropdown-menu{text-transform:capitalize}.expand>.dropdown-menu{display:block}.heading{border-bottom:2px solid #e7e7e7;padding:10px 0;text-transform:capitalize}img.bio{width:100%}.row{z-index:1;position:relative;}.row img.genspace{max-width:420px;margin-bottom:20px}.row.intro img{width:100%;max-width:600px;}@media only screen and (max-width:992px){.row.intro img{margin:20px auto;display:block}}.teamIntro{width:95%;margin:auto}.team.container{padding-top:0}.team .member .lead{text-transform:capitalize}.parts ul{margin:60px 30px 60px 0}.parts .row{background-color:rgba(255,255,255,0.8);z-index:0;position:relative;border-top:0 solid #c7c7c7;margin:40px 0 80px}.parts .header{margin:0;background-color:rgba(255,255,255,0);border-top:0 solid #c7c7c7}.parts .partType{font-size:18px;font-weight:700;padding-top:40px;text-align:left}.parts .section{margin:20px}.parts svg{pointer-events:none}.construct-map{transform:scale(1.3) translate(-50px,20px);}@media only screen and (max-width:1200px){.construct-map{transform:scale(1.2) translate(-70px,20px)}}table{margin:30px 40px;width:90%;font-size:.98em;}table td.col{text-align:center}table tr:first-child{border-bottom:1px solid #373737}table td.col1,table td.col4{text-align:left}table .col2{font-size:32px}table .col3{padding:0 10px}table .col4{width:30%}table .header .col2{font-size:.99em;}@media only screen and (max-width:767px){table .header .col2{font-size:.98em}}table .header td.col{font-size:1em;font-weight:700}#page .partNav.lead{padding:5px;font-size:1em}.weekNav.lead{padding:5px;font-size:16px}.week{margin:0 0 20px;padding:0 0 60px;border-bottom:2px solid #c7c7c7;}.week .header{margin:20px}.week .section{background-color:rgba(255,255,255,0.8);padding:20px;margin:0;}.week .section img{width:100%;margin:20px auto;display:block;}.week .section img.small{max-width:500px}.week .section img.col2{margin:20px 1%;max-width:46%;float:left}.fancybox{padding:0}.gal{margin-bottom:20px;}.gal .caption{width:100%;font-size:14px;margin-top:-40px}.quote{width:80%;margin-left:5%}.human .section,.colab .section,.safety .section,.attributions .section{background-color:rgba(255,255,255,0.8);padding:20px;margin:40px 0;}.human .section:first-child,.colab .section:first-child,.safety .section:first-child,.attributions .section:first-child{margin:0}.human .section .lead,.colab .section .lead,.safety .section .lead,.attributions .section .lead{font-size:16px}.human .section img,.colab .section img,.safety .section img,.attributions .section img{width:100%;margin:40px auto;display:block;}.human .section img.small,.colab .section img.small,.safety .section img.small,.attributions .section img.small{max-width:500px}.human .section img.col2,.colab .section img.col2,.safety .section img.col2,.attributions .section img.col2{margin:20px 1%;max-width:46%;float:left}.human .section img.col3,.colab .section img.col3,.safety .section img.col3,.attributions .section img.col3{margin:20px .5%;max-width:32%;float:left}.design .gal{width:60%;margin:60px auto;display:block}.human .practice .lead{margin-bottom:10px}.attributions .member{width:100%;margin:10px 0;display:inline-block}.attributions p{margin:0;line-height:18px;width:auto}.attributions .name{float:left;width:25%;}@media only screen and (max-width:767px){.attributions .name{width:30%}}.attributions .attribution{width:65%;text-transform:capitalize;float:left}/*# sourceMappingURL=index.css.map */
       <!-- <link href="style/index.css" rel="stylesheet"> -->
+
        </style>
    </head>
+
       </head>
  
    <body>
+
      <body>
  
      <!-- Fixed navbar -->
+
 
      <nav class="navbar navbar-default navbar-fixed-top">
+
 
        <div class="container">
+
        <!-- Fixed navbar -->
          <div class="navbar-header">
+
        <nav class="navbar navbar-default navbar-fixed-top">
            <button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+
          <div class="container">
              <span class="sr-only">Toggle navigation</span>
+
            <div class="navbar-header">
              <span class="icon-bar"></span>
+
              <button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
              <span class="icon-bar"></span>
+
                <span class="sr-only">Toggle navigation</span>
              <span class="icon-bar"></span>
+
                <span class="icon-bar"></span>
            </button>
+
                <span class="icon-bar"></span>
            <img class="genspace" src="https://static.igem.org/mediawiki/2015/2/23/Columbia_NYC_GenspaceLogo.png" alt="">
+
                <span class="icon-bar"></span>
            <a class="navbar-brand" href="#"><img id="logo" src="https://static.igem.org/mediawiki/2015/a/a3/IGEM-genspace-logo-lg.png" alt=""></a>
+
              </button>
 +
              <img class="genspace" src="https://static.igem.org/mediawiki/2015/2/23/Columbia_NYC_GenspaceLogo.png" alt="">
 +
              <a class="navbar-brand" href="#"><img id="logo" src="https://static.igem.org/mediawiki/2015/a/a3/IGEM-genspace-logo-lg.png" alt=""></a>
 +
            </div>
 +
            <div id="navbar" class="collapse navbar-collapse">
 +
              <ul class="nav navbar-nav">
 +
                <li class="dropdown">
 +
                  <a href="https://2015.igem.org/Team:Genspace" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Home<span class="caret"></span></a>
 +
                  <ul class="dropdown-menu">
 +
                    <li><a href="https://2015.igem.org/Team:Genspace#accomplishment">Accomplishments</a></li>
 +
                  </ul>
 +
                </li>
 +
                <li class="dropdown">
 +
                  <a href="https://2015.igem.org/Team:Genspace/Description" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">PROJECT<span class="caret"></span></a>
 +
                  <ul class="dropdown-menu">
 +
                    <li><a href="https://2015.igem.org/Team:Genspace/Description#background">Background</a></li>
 +
                    <li><a href="https://2015.igem.org/Team:Genspace/Description#biosensor">Biosensor</a></li>
 +
                    <li><a href="https://2015.igem.org/Team:Genspace/Description#microbiome">Mining the Microbiome</a></li>
 +
                  </ul>
 +
                </li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Design">Design</a></li>
 +
                <li class="active"><a href="https://2015.igem.org/Team:Genspace/Parts">parts</a></li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Notebook">NOTEBOOK</a></li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Attributions">ATTRIBUTIONS</a></li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Team">TEAM</a></li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Collaborations">collaborations</a></li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Practices">HUMAN PRACTICES</a></li>
 +
                <li><a href="https://2015.igem.org/Team:Genspace/Safety">SAFETY</a></li>
 +
              </ul>
 +
            </div><!--/.nav-collapse -->
 
           </div>
 
           </div>
          <div id="navbar" class="collapse navbar-collapse">
+
        </nav>
            <ul class="nav navbar-nav">
+
        
              <li><a href="https://2015.igem.org/Team:Genspace">HOME</a></li>
+
              <li><a href="https://2015.igem.org/Team:Genspace/Team">TEAM</a></li>
+
              <li class="dropdown">
+
                <a href="https://2015.igem.org/Team:Genspace/Description" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">PROJECT<span class="caret"></span></a>
+
                <ul class="dropdown-menu">
+
                  <li><a href="#background">Background</a></li>
+
                </ul>
+
              </li>
+
              <li class="active"><a href="https://2015.igem.org/Team:Genspace/Parts">parts</a></li>
+
              <li><a href="https://2015.igem.org/Team:Genspace/Notebook">NOTEBOOK</a></li>
+
              <li><a href="https://2015.igem.org/Team:Genspace/Attributions">ATTRIBUTIONS</a></li>
+
              <li><a href="https://2015.igem.org/Team:Genspace/Collaborations">collaborations</a></li>
+
              <li><a href="https://2015.igem.org/Team:Genspace/Practices">HUMAN PRACTICES</a></li>
+
              <li><a href="https://2015.igem.org/Team:Genspace/Safety">SAFETY</a></li>
+
            </ul>
+
          </div><!--/.nav-collapse -->
+
        </div>
+
       </nav>
+
 
        
 
        
 
       <div class="">
 
       <div class="">

Latest revision as of 01:55, 19 September 2015

<!DOCTYPE html> Gowanus SuperFUNd - Genspace iGEM 2015

Parts Summary

We submitted 11 new parts and 2 new devices

We synthesized and submitted a sequence-verified twin (BBa_K1799015) for part BBa_K216005 since there was no DNA available for that part in the registry

We characterized two parts and two devices we submitted (BBa_K1799000, BBa_K1799002, BBa_K1799018 and BBa_K1799019.

We improved BBa_K117002, a part submitted by the 2008 NTU-Singapore team that did not work according the Experience section, by synthesizing and submitting a new, working version (BBa_K1799000)

Name

Favorite

Part Type

Short Description

DNA Status

Sequenced

Quantitative Experience

AI-2 detection

BBa_K1799000

Improved pLsrA

submitted

Yes

Yes

BBa_K1799001

LsrK ORF

submitted

BBa_K1799002

LsrR ORF

submitted

Yes

Yes

AI-2 transport

BBa_K1799003

wild-type LsrA ORF

submitted

BBa_K1799004

wild-type LsrC ORF

submitted

Yes

BBa_K1799005

wild-type LsrD ORF

submitted

Yes

BBa_K1799006

wild-type LsrB ORF

submitted

Yes

BBa_K1799007

modularized LsrA ORF

submitted

Yes

BBa_K1799008

modularized LsrC ORF

submitted

Yes

BBa_K1799009

modularized LsrD ORF

submitted

Yes

BBa_K1799010

modularized LsrB ORF

submitted

Yes

BBa_K1799011

LsrA RBS

not submitted

Yes

BBa_K1799012

LsrC RBS

not submitted

Yes

BBa_K1799013

LsrD RBS

not submitted

Yes

BBa_K1799014

LsrB RBS

not submitted

Yes

Nitrogen detection

BBa_K1799015

pYeaR

submitted

Yes

BBa_K1799016

NsrR, repressor of pYeaR

submitted

Yes

BBa_K1799017

 

NsrR, repressor of pYeaR

deleted

Yes

 

Biosensor devices

BBa_K1799018

pLuxR-Rudolph BBa_J37019-BBa_K1429001

submitted

Yes

Yes

BBa_K1799019

AHL-induced LacZ Generator

BBa_K37910-BBa_K909006

submitted

Yes

Yes

BBa_K1799020

Constitutive generator of LacI

not submitted

No

Yes

BBa_K1799021

IPTG-inducible generator of RFP

not submitted

No

Yes

BBa_K1799022

IPTG-repressible, AI-2-sensitive RFP generator

not submitted

No

Yes

Place sticky footer content here.