Difference between revisions of "Team:SF Bay Area DIYBio"

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==BioSunBlock - SunScreen Evolved!==
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===What is BioSunblock?===
  
<h2>BioSunBlock - SunScreen Evolved!</h2>
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BioSunblock is comprised of organic compounds called Mycosporine-like amino acids (MAA’s). MAA’s, also known as “microbial sunscreen,” compounds exhibit UV-protective qualities. MAA’s are naturally produced by organisms that usually live in marine environments with high amounts of UV exposure. The plan for this project is to genetically engineer bacteria to produce these compounds for sunscreen applications.
  
<p> BioSunblock intends to  manipulate a strain of the  bacteria, E.Coli, to produce mycosporine, a protein compound that does not naturally occur in the E.Coli.  Since E. Coli normally live in our intestines, and thus, in total darkness, we aim to insert modified gene sequences containing mycosporine, a compound thought to have sunblock qualities, to make the E. coli tolerant of UV light.Because we are inserting a DNA sequence for a non-naturally occuring substance into a bacteria, we are (hopefully) genetically engineering ourselves a microscopic factory with tangible implications.</p>
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===Why BioSunblock?===
  
<p> We are following up with  tools, like ultraviolet (UV) light, to direct evolution of the mycosporine genes in the hope of enhancing its factory-like abilities. We believe that if we stress the bacteria in this manner, they will evolve better and more efficient mechanisms to protect themselves from UV light and will make more and better sunschreen.</p>
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Our existing chemical sunscreens cause various health and environmental problems. Some are effective at blocking the sunburn inducing UVB rays, but but not the UVA rays that cause long-term skin damage. PABA was shown to induce DNA damage when applied to human skin cells in vitro and exposed to UV light, despite it’s UV protection of the skin from incident UV rays. PABA’s use in sunscreens has been banned in the EU since this study. [https://www.washingtonpost.com/news/energy-environment/wp/2015/10/20/after-sunscreen-protects-humans-it-massacres-coral-reefs/ Other sunscreen compounds such as oxybenzone] are so toxic to coral reefs that the equivalent of a single drop in half-dozen Olympic-sized swimming pools can lead to coral bleaching - a significant issue in areas popular to beach goers and snorkelers.  
  
<p> However that is a compound and DNA is only good at making proteins, therefore we need to have the bacteria create proteins and enzymes that modify the proteins to become compounds. </p>
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Mycosporine-like amino acids (“MAA’s”) are not known to be toxic to humans. In fact, many MAAs have simultaneous anti-oxidant properties in addition to their UV absorbing properties and thus may actually be beneficial in certain human conditions and when used for certain applications. They are also naturally produced by algae and corals, and should be far more friendly to the environment.
  
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===How does it works?===
  
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We will insert into E. coli a set of genes from cyanobacteria that are known to produce shinorine, one of the most common MAA's, based on [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116657 prior work by Baskus and Walsh]. As a side effect, this should also make the E. coli cells more resistant to UV radiation. We will then use a technique called [https://en.wikipedia.org/wiki/Directed_evolution Directed Evolution] to evolve for increased UV resistance, thereby optimising shinorine production in E. coli, or potentially even evolving novel alternative mycosporine-like amino acids. Finally, we will sequence the resulting genes to figure out what changes has come up with to improve on our engineered construct.
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Revision as of 00:57, 16 November 2015

BioSunBlock - SunScreen Evolved!

What is BioSunblock?

BioSunblock is comprised of organic compounds called Mycosporine-like amino acids (MAA’s). MAA’s, also known as “microbial sunscreen,” compounds exhibit UV-protective qualities. MAA’s are naturally produced by organisms that usually live in marine environments with high amounts of UV exposure. The plan for this project is to genetically engineer bacteria to produce these compounds for sunscreen applications.

Why BioSunblock?

Our existing chemical sunscreens cause various health and environmental problems. Some are effective at blocking the sunburn inducing UVB rays, but but not the UVA rays that cause long-term skin damage. PABA was shown to induce DNA damage when applied to human skin cells in vitro and exposed to UV light, despite it’s UV protection of the skin from incident UV rays. PABA’s use in sunscreens has been banned in the EU since this study. Other sunscreen compounds such as oxybenzone are so toxic to coral reefs that the equivalent of a single drop in half-dozen Olympic-sized swimming pools can lead to coral bleaching - a significant issue in areas popular to beach goers and snorkelers.

Mycosporine-like amino acids (“MAA’s”) are not known to be toxic to humans. In fact, many MAAs have simultaneous anti-oxidant properties in addition to their UV absorbing properties and thus may actually be beneficial in certain human conditions and when used for certain applications. They are also naturally produced by algae and corals, and should be far more friendly to the environment.

How does it works?

We will insert into E. coli a set of genes from cyanobacteria that are known to produce shinorine, one of the most common MAA's, based on [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116657 prior work by Baskus and Walsh]. As a side effect, this should also make the E. coli cells more resistant to UV radiation. We will then use a technique called Directed Evolution to evolve for increased UV resistance, thereby optimising shinorine production in E. coli, or potentially even evolving novel alternative mycosporine-like amino acids. Finally, we will sequence the resulting genes to figure out what changes has come up with to improve on our engineered construct.