Difference between revisions of "Team:SPSingapore/ESAQS"

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   <li class = 'last'><a href = "https://2015.igem.org/Team:SPSingapore/Project"><span>PROJECT</span></a>
 
   <li class = 'last'><a href = "https://2015.igem.org/Team:SPSingapore/Project"><span>PROJECT</span></a>
 
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<ul>
         <li><a href = "https://2015.igem.org/Team:SPSingapore/esa"><span>ESA Quorum Sensing</span></a></li>
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         <li><a href = "https://2015.igem.org/Team:SPSingapore/ESAQS"><span>ESA Quorum Sensing</span></a></li>
 
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Invasin"><span>Invasin + Listerolysin</span></a></li>
 
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Invasin"><span>Invasin + Listerolysin</span></a></li>
 
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Anaerobic Promoter"><span>Anaerobic Promoter</span></a></li>
 
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Anaerobic Promoter"><span>Anaerobic Promoter</span></a></li>
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<td colspan=1 style = "box-shadow: 0 0 0; padding:0;border-top:5px white;font-size:15px"><h1>Anaerobic Response System</h1></td>
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<td colspan=1 style = "box-shadow: 0 0 0; padding:0;border-top:5px white;font-size:15px"><h1>ESA Quorum Sensing</h1></td>
 
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Introduction
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The Quorum-Sensing System
 
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A major problem with cancer therapies is the low specificity of many treatment drugs. Conventional therapies are often administered in a systemic fashion, leading to numerous unwanted off-target effects. To mitigate such issues, there is thus a need for targeted drug delivery systems for anticancer drugs.
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Quorum sensing (QS) is a system by which bacteria communicate with each other according to the density of the population. Through this system, bacteria are able to coordinate changes in gene expression and thereby alter their phenotype to better adapt to the environment (Miller et al., 2001). Our group aims to harness this system to regulate gene expression in our modified bacteria. As more bacteria gather in the hypoxic tumour core, they sense the increase in population density, and then express the gene of interest. Therefore, by placing the gene of interest under both hypoxic and QS regulation, we can precisely regulate the expression of the therapeutic drug or gene.  
 
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Bacteria have long been considered promising candidates for drug delivery. Some strains of bacteria are highly anaerobic, and can only survive in hypoxic environments. As the tumor microenvironment is one of the few few hypoxic sites in the human body. Anaerobic bacteria will therefore thrive in hypoxic tumour cores and die in oxygenated regions, allowing greater specificity in targeting. Clostridium novyi, an anaerobic bacterium, was found to successfully reduce tumour sizes in phase I clinical trials. However,  Clostridium is relatively more difficult to manipulate than other strains of bacteria, making it an unideal choice of a delivery vector.
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The system comprises of three main components: AHL, esaR and the esaR Binding Site dependent promoter (esaRBS). AHL is a quorum sensing signal compound produced by the AHL synthase esaI (Bodman, 1995). Typically. EsaR is a luxR homologue capable of binding to promoters containing an esaRBS, silencing expression of promoted genes. This repression can be reversed through the addition of AHL to the system, which binds to esaR to form a complex with a lowered binding ability.
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Besides strictly anaerobic microbes, there exist other bacteria strains which are facultative anaerobes, the most well-known being Escherichia coli. These strains can survive in both aerobic and anaerobic environments by changing their gene expression programmes accordingly. Thus, we can utilise the natural ability of E. coli to express certain genes under anaerobic conditions to express therapeutic genes/drugs only in the hypoxic core of the tumour.  
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However, the tumour core is not the only hypoxic location in the body. For example, the bone marrow and gut are also hypoxic environments in which the anaerobic expression programme may be activated. As a result, there is a need for more specific control of regulation of the therapeutic drugs or genes. 
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<!---Protocol 1 -->
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The Quorum-Sensing System
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Part Design
 
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Quorum sensing (QS) is a system by which bacteria communicate with each other according to the density of the population. Through this system, bacteria are able to coordinate changes in gene expression and thereby alter their phenotype to better adapt to the environment. Our group aims to harness this system to regulate gene expression in our modified bacteria. As more bacteria gather in the hypoxic tumour core, they sense the increase in population density, and then express the gene of interest. Therefore, by placing the gene of interest under both hypoxic and QS regulation, we can precisely regulate the expression of the therapeutic drug or gene.  
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The core component of the QS system consists of two main parts: plac-esaR and esaRBS-GFP (Figure 1). The esaRBS part was derived from known PesaR sequences (Shong and Collins, 2013), esaR from Addgene plasmid #47660. All other components were obtained from the biobricks repository (plac, GFP, <a href = "http://parts.igem.org/Part:BBa_K1804001">BBa_K1804001</a>). Typically, constitutive production of esaR results in a constitutive repression of the GFP gene. However, when a critical bacterial density is reached, production of the AHL QS signal derepresses GFP production, allowing its expression and thus visual identification of activity. However, due to time constraints, we were unable to fully construct this system.
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The esaR binding site however, would be our repressor site,        where esaR will bind to when there’s no quorum sensing. esaR is a homologue of luxR. Unlike luxR which is activated upon binding to AHL, esaR loses its ability to bind on the binding site after forming a complex with AHL. Generally, esaR is paired with another protein - esaI. esaI synthesises AHL, which interferes the binding capabilities of esaR.  
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<img src = "https://static.igem.org/mediawiki/2015/d/de/SPSingapore_esa.png" width = 500px></a>
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<figcaption><b>Figure 1 :</b> Plasmid map of Plasmid map of pAC-plac-esaR-esaRBS-GFP (plac-esaR/BS-GFP).
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Latest revision as of 08:02, 3 November 2015


ESA Quorum Sensing


The Quorum-Sensing System
Quorum sensing (QS) is a system by which bacteria communicate with each other according to the density of the population. Through this system, bacteria are able to coordinate changes in gene expression and thereby alter their phenotype to better adapt to the environment (Miller et al., 2001). Our group aims to harness this system to regulate gene expression in our modified bacteria. As more bacteria gather in the hypoxic tumour core, they sense the increase in population density, and then express the gene of interest. Therefore, by placing the gene of interest under both hypoxic and QS regulation, we can precisely regulate the expression of the therapeutic drug or gene.

The system comprises of three main components: AHL, esaR and the esaR Binding Site dependent promoter (esaRBS). AHL is a quorum sensing signal compound produced by the AHL synthase esaI (Bodman, 1995). Typically. EsaR is a luxR homologue capable of binding to promoters containing an esaRBS, silencing expression of promoted genes. This repression can be reversed through the addition of AHL to the system, which binds to esaR to form a complex with a lowered binding ability.

Part Design
The core component of the QS system consists of two main parts: plac-esaR and esaRBS-GFP (Figure 1). The esaRBS part was derived from known PesaR sequences (Shong and Collins, 2013), esaR from Addgene plasmid #47660. All other components were obtained from the biobricks repository (plac, GFP, BBa_K1804001). Typically, constitutive production of esaR results in a constitutive repression of the GFP gene. However, when a critical bacterial density is reached, production of the AHL QS signal derepresses GFP production, allowing its expression and thus visual identification of activity. However, due to time constraints, we were unable to fully construct this system.
Figure 1 : Plasmid map of Plasmid map of pAC-plac-esaR-esaRBS-GFP (plac-esaR/BS-GFP).