Difference between revisions of "Team:SPSingapore/Parts"

 
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  <li><a href='https://2015.igem.org/Team:SPSingapore/Team'><span>Team</span></a></li>
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<li><a href='https://2015.igem.org/Team:SPSingapore/Team'><span>Team</span></a>
  <li><a href='https://2015.igem.org/Team:SPSingapore/Project'><span>Project</span></a></li>
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  <li><a href='https://2015.igem.org/Team:SPSingapore/Protocol'><span>Protocol</span></a></li>
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<li><a href="https://2015.igem.org/Team:SPSingapore/Team">Overview</a></li>
  <li class = 'active'><a href='https://2015.igem.org/Team:SPSingapore/Parts'><span>Parts</span></a></li>
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<li><a href="https://igem.org/Team.cgi?id=1804">Official Profile</a></li>
  <li><a href='https://2015.igem.org/Team:SPSingapore/Notebook'><span>Notebook</span></a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Team Bios">Team Bios</a></li>
  <li><a href='https://2015.igem.org/Team:SPSingapore/Practices'><span>Human Practices</span></a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Mentors">Mentors</a></li>
  <li class='last'><a href='https://2015.igem.org/Team:SPSingapore/Safety'><span>Safety</span></a></li>
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<li><a href='https://2015.igem.org/Team:SPSingapore/Project'><span>Project</span></a>
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<li><a href='https://2015.igem.org/Team:SPSingapore/Project'>Overview</a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Invasin">Invasin + Listerolysin</a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/ESAQS">esa Quorum Sensing</a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Anaerobic Promoter">Anaerobic Promoter</a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Description">Parts</a></li>
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<li><a href='https://2015.igem.org/Team:SPSingapore/Notebook'><span>Notebook</span></a>
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<li><a href="https://2015.igem.org/Team:SPSingapore/Protocol">Protocols</a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Notebook">Entries</a></li>
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<li><a href='https://2015.igem.org/Team:SPSingapore/Practices'><span>Human Practices</span></a>
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<li><a href="https://2015.igem.org/Team:SPSingapore/Practices">Overview</a></li>
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<li><a href="https://2015.igem.org/Team:SPSingapore/Workshop">Workshop</a></li>
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<li><a href="https://2015.igem.org/Team:SPSingapore/Workshop Materials">Workshop Materials</a></li>
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        <li><a href="https://2015.igem.org/Team:SPSingapore/Interview">Consultations</a></li>
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<li><a href='https://2015.igem.org/Team:SPSingapore/Safety'><span>Safety</span></a></li>
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<li class='last'><a href='https://2015.igem.org/Team:SPSingapore/Medals'><span>Medals</span></a></li>
 
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   <li class='last'><a href = "https://2015.igem.org/Team:SPSingapore/Parts"><span>PARTS</span></a>
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   <li class = 'last'><a href = "https://2015.igem.org/Team:SPSingapore/Project"><span>PROJECT</span></a>
 
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<ul>
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Team_Part"><span>Team Part </span></a></li>
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         <li><a href = "https://2015.igem.org/Team:SPSingapore/ESAQS"><span>ESA Quorum Sensing</span></a></li>
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Basic_Part"><span>Basic Part </span></a></li>
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         <li><a href = "https://2015.igem.org/Team:SPSingapore/Invasin"><span>Invasin + Listerolysin</span></a></li>
         <li><a href = "https://2015.igem.org/Team:SPSingapore/Composite_Part"><span>Composite Part </span></a></li>
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         <li><a href = "https://2015.igem.org/Team:SPSingapore/Anaerobic Promoter"><span>Anaerobic Promoter</span></a></li>
         <li class = 'last'><a href = "https://2015.igem.org/Team:SPSingapore/Part_Collection"><span>Part Collection</span></a></li>
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         <li class = 'last'><a href = "https://2015.igem.org/Team:SPSingapore/Description"><span>Parts</span></a></li>
 
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<td colspan=1 style = "box-shadow: 0 0 0; padding:0;border-top:5px white;font-size:15px"><h1>Parts</h1></td>
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<td colspan=1 style = "box-shadow: 0 0 0; padding:0;border-top:5px white;font-size:15px"><h1>Contribution to Registry</h1></td>
 
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<i>
 
Synthetic biology is an exciting and upcoming field, but not one without its fair share of controversy. In order to increase awareness and generate dialogue of this discipline, the SPSingapore iGEM team held a genetic engineering workshop for fellow university students, as well as conducted an interview with a professor on his views and insights.</i>
 
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The Invasin-Listerolysin system
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The SPS iGEM Team of 2015 hosted a genetic engineering workshop for students from the Faculty of Science on 5th August 2015, in the Active Learning Room and the SPS Wet Lab. The workshop aimed to equip science students with an understanding of both the techniques of synthetic biology, and its risks and rewards. Participants were given the opportunity to be immersed in both the theoretical and wet lab components of synthetic biology.
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Students were first guided through the concepts of genetic engineering, and the available wet lab tools and techniques used. After some light refreshments, they then got a chance to try their hands at designing their very own gene vectors with a fun set of theoretical puzzles.
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The Invasin protein from Yersinia is a outer surface protein that induces phagocytosis of the pathogenic Yersinia by mammalian cells in a beta integrin dependent manner(<a href = "#ref">Wiedemann et al., 2001</a>). Whereas the Listerolysin O cytolysin of Listeria moncytogenes is a well documented cytolysin, which allows for lysis of the endosome vacuole by the pathogen after entry into a mammalian cell (<a href = "#ref">Dramsi & Cossart, 2002</a>). This facilitates endosomal escape of the bacteria. When these two [proteins are coupled together, they can confer non-pathogenic bacteria with suitable features to serve as a drug delivery vector to the cytoplasm.
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After lunch, the participants performed Fusion PCR (Polymerase Chain Reaction) and performed bacterial transformation in the SPS Wet Lab. They also had a look at green fluorescent protein (GFP) expressed in E. coli, as an example of one of the methods that are commonly used to quantify protein expression.
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<img src = "https://static.igem.org/mediawiki/2015/b/b0/SPSingapore_igemworkshop-4.jpg" width = "280px" align = "left" style="border:2px solid red;margin-right:20px">
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Registry Update of BBa_299812
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All in all, both the workshop participants and facilitators spent an enjoyable day both learning and sharing about genetic engineering. The SPS iGEM Team of 2015 would like to thank all participants for spending their day with us! We would also like to thank Science Dean’s Office for their kind sponsorship, as well as the SPS staff and SPS community for their support.
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In constructing our Anaerobic Response System, we chose Invasin and Listeriolysin as part of our drug delivery system, building upon a construct from the Warsaw 2010 team, BBa_K299812. BBa_K299812 is a useful intermediate part containing the Invasin and Listeriolysin with ribosome binding sites in front of the genes. Different promoter sequences could be prepended ahead of the part and modified for our use.
 +
<br><br>
 +
However, when sequencing the part we received from the repository, our team found that the part sequence had major mismatches with the documented sequence. This was particularly serious for the invasin gene, which had only 55% identity between the translated amino acid sequences from the part wiki and our sequencing results. Furthermore, even though BLAST results showed that the invasin gene was indeed present, the strain of origin seemed to be different from the documentation. Lastly, the part does not strictly adhere to BioBricks standard, because the suffix sequence had only the PstI site left. (Further details and updated sequence can be found <a href = "http://parts.igem.org/Part:BBa_K299812:Experience">here</a>.)
 +
<br><br>
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As our lab only has the resources to functionally characterise the effect of the expression of invasin through an invasion assay, invasin was our main focus for the construction of parts for our Anaerobic Response System.
 
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References
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Dramsi, S. and Cossart, P. (2002) Listeriolysin O: a genuine cytolysin optimized for an intracellular parasite. J Cell Biol. 2002 Mar 18; 156(6): 943–946.
 +
<br><br>
 +
Wiedemann A1, Linder S, Grassl G, Albert M, Autenrieth I, Aepfelbacher M. (2001) Yersinia enterocolitica invasin triggers phagocytosis via beta1 integrins, CDC42Hs and WASp in macrophages. Cell Microbiol. 2001 Oct;3(10):693-702.
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<img src = "https://static.igem.org/mediawiki/2015/7/72/SPSingapore_SPS-Logo.png" height = "60px" style = "margin-top:10px;margin-right:50px;"></a>
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Latest revision as of 17:09, 14 November 2015


Contribution to Registry



The Invasin-Listerolysin system
The Invasin protein from Yersinia is a outer surface protein that induces phagocytosis of the pathogenic Yersinia by mammalian cells in a beta integrin dependent manner(Wiedemann et al., 2001). Whereas the Listerolysin O cytolysin of Listeria moncytogenes is a well documented cytolysin, which allows for lysis of the endosome vacuole by the pathogen after entry into a mammalian cell (Dramsi & Cossart, 2002). This facilitates endosomal escape of the bacteria. When these two [proteins are coupled together, they can confer non-pathogenic bacteria with suitable features to serve as a drug delivery vector to the cytoplasm.

Registry Update of BBa_299812
In constructing our Anaerobic Response System, we chose Invasin and Listeriolysin as part of our drug delivery system, building upon a construct from the Warsaw 2010 team, BBa_K299812. BBa_K299812 is a useful intermediate part containing the Invasin and Listeriolysin with ribosome binding sites in front of the genes. Different promoter sequences could be prepended ahead of the part and modified for our use.

However, when sequencing the part we received from the repository, our team found that the part sequence had major mismatches with the documented sequence. This was particularly serious for the invasin gene, which had only 55% identity between the translated amino acid sequences from the part wiki and our sequencing results. Furthermore, even though BLAST results showed that the invasin gene was indeed present, the strain of origin seemed to be different from the documentation. Lastly, the part does not strictly adhere to BioBricks standard, because the suffix sequence had only the PstI site left. (Further details and updated sequence can be found here.)

As our lab only has the resources to functionally characterise the effect of the expression of invasin through an invasion assay, invasin was our main focus for the construction of parts for our Anaerobic Response System.

References
Dramsi, S. and Cossart, P. (2002) Listeriolysin O: a genuine cytolysin optimized for an intracellular parasite. J Cell Biol. 2002 Mar 18; 156(6): 943–946.

Wiedemann A1, Linder S, Grassl G, Albert M, Autenrieth I, Aepfelbacher M. (2001) Yersinia enterocolitica invasin triggers phagocytosis via beta1 integrins, CDC42Hs and WASp in macrophages. Cell Microbiol. 2001 Oct;3(10):693-702.