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Software Libraries

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Libray Description

Python Python is a general purpose, interpreted, cross-platform, object-oriented, open-source programming language widely used in the scientific world.

OpenMM We used OpenMM for molecular simulation, specifically to compute the energy levels of given systems consisting of a ligand and an aptamere.

NumPy NumPy is a fundamental package for scientific computing with Python, version 1.9.2 has been used to hel us doing math.

Amber Amber is a toolkit for molecular diynamic computations.

pexpect pexpect is a Python module for handling child applications.

mpmath mpmath is a Python library for real and complex floating point arithmetic with arbitrary precicion.

zitator.js Developed to make online-citing easier

plasmid.js Developed to make plasmid maps interactive