Difference between revisions of "Team:TCU Taiwan/Project/Experimental"
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+ | 為了能夠有效的為了能夠使我們更有效地拿到我們的指定抗菌肽,我們在設計序列時在AMPs的N-terminal加了一個signal peptide。這個signal peptide是來自於 | ||
+ | S.lividans的幾丁質酶C(signal peptide sequence: MGFRHKAAALAATLALPLAGLVGLASPAQA)。在進行轉錄後,signal peptide會引導AMPs到E.coli的分泌系統。在pre-mature peptide穿越periplasmic space,peptidase會辨認signal peptide上的Ala-Gln-Ala氨基酸序列,並且在signal peptide和mature peptide連接處的兩個Ala之間將之分開。最後分泌出AMPs到LB 培養液中。 | ||
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+ | 為了確保我們的分泌系統能順利運作。我們調整了Signiferin 還有Epinicedin-1的N-terminal加了一個Ala去幫助peptidase能夠順利做切割,並且接續將我們的AMPs分泌到胞外。我們在網頁的modeling page中呈現了用軟體預測結構的結果,分析在我們加了一個Ala後是否會影響蛋白的摺疊過程。 | ||
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+ | In order to have more efficient to get our AMPs, we treated signal peptide upstream of the N-terminal of antimicrobial peptides to facilitate the peptide production. This signal peptide is comes from chitinase C of S.lividans (MGFRHKAAALAATLALPLAGLVGLASPAQA).<a href="#tcu_sing_references_1">[1]</a> After translation process signal peptide will lead AMPs to the secretion system of E.coli. <a href="#tcu_sing_references_2">[2]</a> When the pre-mature peptides go through the periplasmic space, peptidase will identified the cleavage site Ala-Gln-Ala and cut at the double Ala at the signal and mature peptide linkage site. Then separate signal peptide from AMPs. Finally, secreting AMPs to the LB culture medium. | ||
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+ | To make sure the secretion system is work we attached an Ala at the N-terminal of AMPs. So we had modified the amino acid sequence of Signiferin and Epinecidin-1 to facilitate the secretion process. And we had used structure prediction software to analysis the attached Ala affect the peptide folding process or not in our <a href="https://2015.igem.org/Team:TCU_Taiwan/Modeling/Protein_structure">modeling page</a>. | ||
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+ | References | ||
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+ | <a name="tcu_sing_references_2"></a> | ||
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+ | <td style="vertical-align:text-top;" align="left">[1]</td> | ||
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+ | Fujii, T. and K. Miyashita, Multiple domain structure in a chitinase gene (chiC) of Streptomyces lividans. J Gen Microbiol, 1993. 139(4): p. 677-86. | ||
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+ | <td style="vertical-align:text-top;" align="left">[2]</td> | ||
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+ | Tokuyasu, K., et al., Production of a recombinant chitin deacetylase in the culture medium of Escherichia coli cells. FEBS Lett, 1999. 458(1): p. 23-6. | ||
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Revision as of 03:33, 8 September 2015
Signal Peptide |
為了能夠有效的為了能夠使我們更有效地拿到我們的指定抗菌肽,我們在設計序列時在AMPs的N-terminal加了一個signal peptide。這個signal peptide是來自於
S.lividans的幾丁質酶C(signal peptide sequence: MGFRHKAAALAATLALPLAGLVGLASPAQA)。在進行轉錄後,signal peptide會引導AMPs到E.coli的分泌系統。在pre-mature peptide穿越periplasmic space,peptidase會辨認signal peptide上的Ala-Gln-Ala氨基酸序列,並且在signal peptide和mature peptide連接處的兩個Ala之間將之分開。最後分泌出AMPs到LB 培養液中。
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Contact us tcutaiwan@gmail.com No.701, Sec. 3, Zhongyang Rd. Hualien 97004, Taiwan |