Difference between revisions of "Team:UCDavis/Team"

 
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<li style="width:120px;"> <a href="https://2015.igem.org/Team:UC_Davis" title="Home">Home</a>
 
<li style="width:120px;"> <a href="https://2015.igem.org/Team:UC_Davis" title="Home">Home</a>
 
       </li>
 
       </li>
       <li style="width:120px;"> <a href="https://2015.igem.org/Team:UCDavis/Team" title="Team">Team</a>
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       <li style="width:120px;"> <a href="https://2015.igem.org/Team:UCDavis/Attributions" title="Team">Team</a>
 
    
 
    
 
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<h3> UC Davis iGEM 2015 </h3>
 
<h3> UC Davis iGEM 2015 </h3>
The 2015 UC Davis iGEM team is cool. We do cool things and have a cool project. Also this header doesn't necessarily have to be here but I decided to change it.
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<div class="row">
<br><br><br>
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    <div class="row">
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      <div class="col-md-8" style="font-size:15px">
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        <h4>Gabriel Freund</h4>
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        Gabe Bio
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      </div>
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      <div class="col-md-4">
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        <img src="https://static.igem.org/mediawiki/2014/8/81/Peter_Photo.jpg"class="img-responsive img-rounded memberpic" width="200px" height="300px"/>
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      </div>
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    </div> <br>
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    <div class="row">
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       <div class="col-md-8" style="font-size:15px">
 
       <div class="col-md-8" style="font-size:15px">
 
         <h4>Andrew Michelmore</h4>  
 
         <h4>Andrew Michelmore</h4>  
        Andrew Mich BIO
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      <p> Hi. I am Andrew Michelmore, a second year Electrical Engineer at Santa Clara University. I am very interested in the engineering and design of power grids, as well as in transistor organization for processors and microprocessors. I hope to pursue a career in one of these areas. I decided to join iGEM, because I was interested in the engineering approach and view iGEM has towards biology.</p>
 +
 
 +
<p>I contributed to the project mostly through outreach and wastewater collection. I also assisted with hardware and hardware testing.</p>
 +
 
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
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         <h4>Muntaha Samad</h4>
 
         <h4>Muntaha Samad</h4>
          Muntaha BIO
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          <p> Hi! My name is Muntaha Samad and I am a third year at UC Davis studying Computer Science and Engineering.  I am very interested in mobile deep linking, and the idea of making the app world fluid like the web. I also really enjoy robotics and am interested in pursuing a career working with smart prosthetics.  In my free time I enjoy playing ultimate frisbee and working for the UC Davis C-STEM Center. I decided to join iGEM to gain more experience programming in the context of solving biological problems. </p>
 +
 
 +
<p>This summer I produced an app that calculates your antimicrobial footprint and raises awareness about the unnecessary and potentially harmful ubiquity of antimicrobials in our environment. I also put together the wiki.</p>
 +
 
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">
         <img src = "https://static.igem.org/mediawiki/2015/6/63/UCDavis2015_muntaha.jpg" class="img-responsive img-rounded memberpic" width="200px" height="300px"/>
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         <img src = "https://static.igem.org/mediawiki/2015/6/63/UCDavis2015_muntaha.jpg" class="img-responsive img-rounded memberpic" width="200px" height="100px"/>
 
       </div>
 
       </div>
 
     </div><br>
 
     </div><br>
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       </div>
 
       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">
       <img src="https://static.igem.org/mediawiki/2014/7/71/Michaela_Picture.jpg" class="img-responsive img-rounded memberpic" width="200px" height="300px"/>
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       <img src="https://static.igem.org/mediawiki/2015/f/fd/UCDavis2015_andrew_shepard.jpg" class="img-responsive img-rounded memberpic" width="200px" height="300px"/>
 
       </div>
 
       </div>
 
     </div><br>
 
     </div><br>
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       <div class="col-md-8" style="font-size:15px">
 
       <div class="col-md-8" style="font-size:15px">
 
         <h4>Logan Vinson </h4>
 
         <h4>Logan Vinson </h4>
         Logan BIO
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 +
<p>Hello, I am Logan Vinson a fourth year Genetics and Genomics major at UC Davis. My career interests include genetic monitoring and breeding selection for endangered species and populations under inbred depression and genetic bottleneck. In my spare time I enjoy rock climbing and engineering. I first found out about iGEM while i was at my junior college by my biology professor. She told me about the competition after i had expressed interest in genetic manipulation and synthetic biology. Ever since then i had made it my personal and professional goal to compete in iGEM.</p>
 +
 
 +
<p>This summer I worked on genetic assembly and integration, expression and protein purification. I also helped with outreach and data collection. </p>
 +
 
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">
         <img src="https://static.igem.org/mediawiki/2014/c/ca/TuftsDenali.jpg" class="img-responsive img-rounded" width="250px" height="350px"/>
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         <img src="https://static.igem.org/mediawiki/2015/a/ae/UCDavis2015_logan.jpg" class="img-responsive img-rounded" width="250px" height="350px"/>
 
       </div>
 
       </div>
 
     </div> <br>
 
     </div> <br>
 +
    <div class="row">
 +
      <div class="col-md-8" style="font-size:15px">
 +
        <h4>Gabriel Freund</h4>
 +
        Gabe Bio
 +
      </div>
 +
      <div class="col-md-4">
 +
        <img src="https://static.igem.org/mediawiki/2014/8/81/Peter_Photo.jpg"class="img-responsive img-rounded memberpic" width="200px" height="300px"/>
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      </div>
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    </div> <br>
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 +
   
  
 
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         <h4>Dr. Justin Siegel - <I> Advisor </I></h4>  
 
         <h4>Dr. Justin Siegel - <I> Advisor </I></h4>  
 
<i>University of California Davis, Department of Biochemistry and Molecular Medicine and School of Medicine </i> <br>
 
<i>University of California Davis, Department of Biochemistry and Molecular Medicine and School of Medicine </i> <br>
        Jesse Starger is a junior at Tufts University majoring in Chemical and Biological Engineering. Jesse
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      My scientific efforts are focused on combining computational and experimental tools to develop a fundamental knowledge of enzyme catalysis, and applying those principles to design novel proteins of therapeutic or commercial interest. Currently I am working with an international community on the development of Rosetta computational methodology for predicting and designing macromolecular structures, interactions, and functions. Using this methodology I have completed the de novo design of enzymes capable of catalyzing chemical reactions not found in nature, such as the Diels-Alder reaction. This was followed up by working with an online community, Foldit, to further engineer these proteins for enhanced activity. Most recently I have worked on the redesign of naturally occurring enzymes for the degradation of immunogenic gluten proteins, to develop a novel CO2 fixation pathways, and design of a novel anthrax therapeutic. My current focus is on the design of novel biofuel and commodity chemical biosynthetic pathways, the development of novel therapeutics, and the general understanding of the relationship between protein sequence, structure, and function.
        has research experience in the polymer field as he continues to work in the Yi lab with overarching
+
        interests in sustainable and environmental engineering. Outside of class, Jesse is a member of the Tufts
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        University Men’s Rugby Football Club in addition to being the Eco-Rep for his dorm. While with the Tufts
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        iGEM Team, Jesse hopes to increase his exposure to other academic fields through more independent
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        forms of study than what a traditional undergraduate education may typically allow.
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       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">
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         <h4>Dr. Ilias Tagkopoulos - <I> Advisor </I></h4>
 
         <h4>Dr. Ilias Tagkopoulos - <I> Advisor </I></h4>
 
<i>University of California Davis, Department of Computer Science and UC Davis Genome Center  </i> <br>
 
<i>University of California Davis, Department of Computer Science and UC Davis Genome Center  </i> <br>
        Petar Todorov majored in chemistry with an established tradition in research. During the
+
      My lab’s interests span a variety of topics related to evolutionary, synthetic and systems biology. We employ machine learning, graph theory, mathematical optimization, multiscale modeling and HPC simulation methods to address questions in these fields. Computational predictions are experimentally tested in our microbiology lab, where we perform laboratory evolution of microbial cultures, and we construct novel synthetic gene circuits for biotechnological applications.
        last five years he has worked on projects spanning biophysics, molecular biology, and biomedical
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        engineering. He currently works on elucidating restriction enzyme mechanisms in the Walt group at
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        Tufts. Mr. Todorov established Tufts iGEM in early 2013. Since then he has worked to help the group
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        secure funding, laboratory space, and faculty support in addition to guiding literature searches and
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        drafting proposals outlining potential routes of research. Beyond the bench, he is interested in the
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        intersection science, technology, society, and ethics. Mr. Todorov was one of the students involved
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        in organizing the Institute of Global Leadership’s 2013 professional workshop focused on Privacy and
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        Progress in Whole Genome Sequencing. Outside the lab Petar enjoys travel, photography, and reading in
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        Bulgarian, English, and Latin. Petar has served as an advisor to the team since graduating in May.
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       </div>
 
       </div>
 
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         <h4>Dr. Marc Facciotti - <I> Advisor </I></h4>
 
         <h4>Dr. Marc Facciotti - <I> Advisor </I></h4>
 
<i>University of California Davis, Department of Biomedical Engineering and UC Davis Genome Center  </i> <br>
 
<i>University of California Davis, Department of Biomedical Engineering and UC Davis Genome Center  </i> <br>
         Michael is a junior from Columbia, SC, majoring in Biopsychology. He first got involved with Tufts iGEM shortly after its founding in February 2013. As director, he has helped organize a conference on the Future of Phage Therapy and Synthetic Biology and worked with faculty and administrators to secure funding and housing for our team. Michael has worked in several labs at different universities, and he is also involved in Tufts Sustainability Collective and Active Minds on campus. He enjoys being outdoors, going to the gym, and rock climbing.  
+
         I are interested in using the tools of Systems Biology to elucidate rules of biological assembly for gene regulatory networks and in turn use this knowledge, through Synthetic Biology approaches, to build novel circuits.
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
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         <h4>Alex Carlin - <I> Advisor </I></h4>
 
         <h4>Alex Carlin - <I> Advisor </I></h4>
 
<i>University of California Davis, Biophysics Graduate Group </i> <br>
 
<i>University of California Davis, Biophysics Graduate Group </i> <br>
        Michael is a junior from Columbia, SC, majoring in Biopsychology. He first got involved with Tufts iGEM shortly after its founding in February 2013. As director, he has helped organize a conference on the Future of Phage Therapy and Synthetic Biology and worked with faculty and administrators to secure funding and housing for our team. Michael has worked in several labs at different universities, and he is also involved in Tufts Sustainability Collective and Active Minds on campus. He enjoys being outdoors, going to the gym, and rock climbing.
 
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
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         <h4>Aaron Cohen - <I> Advisor </I></h4>
 
         <h4>Aaron Cohen - <I> Advisor </I></h4>
 
<i>University of California Davis, Department of Biomedical Engineering </i> <br>
 
<i>University of California Davis, Department of Biomedical Engineering </i> <br>
        Michael is a junior from Columbia, SC, majoring in Biopsychology. He first got involved with Tufts iGEM shortly after its founding in February 2013. As director, he has helped organize a conference on the Future of Phage Therapy and Synthetic Biology and worked with faculty and administrators to secure funding and housing for our team. Michael has worked in several labs at different universities, and he is also involved in Tufts Sustainability Collective and Active Minds on campus. He enjoys being outdoors, going to the gym, and rock climbing.  
+
I graduated from UC Davis with a degree in Biomedical Engineering and hope to one-day owning my own biotechnology business.
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">
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         <h4>Russell Neches - <I> Advisor </I></h4>
 
         <h4>Russell Neches - <I> Advisor </I></h4>
 
<i>University of California Davis, Microbiology Graduate Group</i> <br>
 
<i>University of California Davis, Microbiology Graduate Group</i> <br>
        Michael is a junior from Columbia, SC, majoring in Biopsychology. He first got involved with Tufts iGEM shortly after its founding in February 2013. As director, he has helped organize a conference on the Future of Phage Therapy and Synthetic Biology and worked with faculty and administrators to secure funding and housing for our team. Michael has worked in several labs at different universities, and he is also involved in Tufts Sustainability Collective and Active Minds on campus. He enjoys being outdoors, going to the gym, and rock climbing.
 
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">
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         <h4>Andrew Yao - <I> Advisor </I> </h4>  
 
         <h4>Andrew Yao - <I> Advisor </I> </h4>  
 
<i>University of California Davis, Department of Biomedical Engineering </i> <br>
 
<i>University of California Davis, Department of Biomedical Engineering </i> <br>
Dr. Nikhil Nair is a professor in the Chemical and Biological Engineering
 
Department of the Engineering School of Tufts University. His research
 
focuses on altering various aspects of microbial physiology with the aim of
 
not only engineering them for applications, but also to understand why
 
various features of life evolved the way they did. He believes that, as an
 
engineer, building a synthetic system is one of the most powerful methods
 
to understand the intricacies of that system. Dr. Nair is the advisor of the
 
Tufts Synthetic Biology team.
 
 
       </div>
 
       </div>
 
       <div class="col-md-4">
 
       <div class="col-md-4">

Latest revision as of 01:44, 12 September 2015

UC Davis iGEM 2015

Andrew Michelmore

Hi. I am Andrew Michelmore, a second year Electrical Engineer at Santa Clara University. I am very interested in the engineering and design of power grids, as well as in transistor organization for processors and microprocessors. I hope to pursue a career in one of these areas. I decided to join iGEM, because I was interested in the engineering approach and view iGEM has towards biology.

I contributed to the project mostly through outreach and wastewater collection. I also assisted with hardware and hardware testing.


Muntaha Samad

Hi! My name is Muntaha Samad and I am a third year at UC Davis studying Computer Science and Engineering. I am very interested in mobile deep linking, and the idea of making the app world fluid like the web. I also really enjoy robotics and am interested in pursuing a career working with smart prosthetics. In my free time I enjoy playing ultimate frisbee and working for the UC Davis C-STEM Center. I decided to join iGEM to gain more experience programming in the context of solving biological problems.

This summer I produced an app that calculates your antimicrobial footprint and raises awareness about the unnecessary and potentially harmful ubiquity of antimicrobials in our environment. I also put together the wiki.


Andrew Shephard

Andrew Shep BIO

Joanne Wu

Joanne BIO

Logan Vinson

Hello, I am Logan Vinson a fourth year Genetics and Genomics major at UC Davis. My career interests include genetic monitoring and breeding selection for endangered species and populations under inbred depression and genetic bottleneck. In my spare time I enjoy rock climbing and engineering. I first found out about iGEM while i was at my junior college by my biology professor. She told me about the competition after i had expressed interest in genetic manipulation and synthetic biology. Ever since then i had made it my personal and professional goal to compete in iGEM.

This summer I worked on genetic assembly and integration, expression and protein purification. I also helped with outreach and data collection.


Gabriel Freund

Gabe Bio

Dr. Justin Siegel - Advisor

University of California Davis, Department of Biochemistry and Molecular Medicine and School of Medicine
My scientific efforts are focused on combining computational and experimental tools to develop a fundamental knowledge of enzyme catalysis, and applying those principles to design novel proteins of therapeutic or commercial interest. Currently I am working with an international community on the development of Rosetta computational methodology for predicting and designing macromolecular structures, interactions, and functions. Using this methodology I have completed the de novo design of enzymes capable of catalyzing chemical reactions not found in nature, such as the Diels-Alder reaction. This was followed up by working with an online community, Foldit, to further engineer these proteins for enhanced activity. Most recently I have worked on the redesign of naturally occurring enzymes for the degradation of immunogenic gluten proteins, to develop a novel CO2 fixation pathways, and design of a novel anthrax therapeutic. My current focus is on the design of novel biofuel and commodity chemical biosynthetic pathways, the development of novel therapeutics, and the general understanding of the relationship between protein sequence, structure, and function.


Dr. Ilias Tagkopoulos - Advisor

University of California Davis, Department of Computer Science and UC Davis Genome Center
My lab’s interests span a variety of topics related to evolutionary, synthetic and systems biology. We employ machine learning, graph theory, mathematical optimization, multiscale modeling and HPC simulation methods to address questions in these fields. Computational predictions are experimentally tested in our microbiology lab, where we perform laboratory evolution of microbial cultures, and we construct novel synthetic gene circuits for biotechnological applications.


Dr. Marc Facciotti - Advisor

University of California Davis, Department of Biomedical Engineering and UC Davis Genome Center
I are interested in using the tools of Systems Biology to elucidate rules of biological assembly for gene regulatory networks and in turn use this knowledge, through Synthetic Biology approaches, to build novel circuits.


Alex Carlin - Advisor

University of California Davis, Biophysics Graduate Group


Aaron Cohen - Advisor

University of California Davis, Department of Biomedical Engineering
I graduated from UC Davis with a degree in Biomedical Engineering and hope to one-day owning my own biotechnology business.


Russell Neches - Advisor

University of California Davis, Microbiology Graduate Group


Andrew Yao - Advisor

University of California Davis, Department of Biomedical Engineering