Difference between revisions of "Team:NAIT Edmonton/Safety"

 
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        <li><a href="https://2015.igem.org/Team:NAIT_Edmonton">home</a></li>
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                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Team">team</a>
 
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                       <li><a href="https://igem.org/Team.cgi?id=1787">official team profile</a>
 
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                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Practices">policy and practices</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Practices">policy and practices</a></li>
 
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                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Notebook">notebook</a>
 
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<center><div class="top_slogan">Lab Safety</div></center>
 
<center><div class="top_slogan">Lab Safety</div></center>
  
<h2>iGEM teams follow a high standard of safe and responsible biological engineering. Because we are members of the synthetic biology community, we are responsible for living up to the trust placed in you to design, build, and share biological devices safely. </h2> <br>
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<h2>iGEM teams follow a high standard of safe and responsible biological engineering. Because we are members of the synthetic biology community, we are responsible for living up to the trust placed in us to design, build, and share biological devices safely. </h2> <br>
  
  <div class="main_content">
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<center><object width="999" height="562" data="http://www.youtube.com/embed/neQjLbdODeU" frameborder="0" allowfullscreen></object></center>
  
  
<div class="accordion">
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<br><br><br>
<div class="accordion-section">
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<a class="accordion-section-title" href="#accordion-1">Safety Training</a>
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<div id="accordion-1" class="accordion-section-content">
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The structural and functional study of the proteins expressed by a genome is
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called proteomics. This relatively novel science uses different methodologies in order to
 
  
separate and identify specific proteins of interest. Among these techniques, SDS-PAGE
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  <div class="main_content">
  
plays an essential role due to its high sensitivity, low sample volume requirement, and  
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<div class="accordion">
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<div class="accordion-section">
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<a class="accordion-section-title" href="#accordion-2"  style="background-color:#f96040">Safety Training</a>
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<div id="accordion-2" class="accordion-section-content">
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<p>Our institution is committed to providing a safe work environment. As such, the NAIT Biosafety program ensures that potentially biohazardous materials used for our research are used only by students and staff that have had appropriate training. All the NAIT laboratories are compliant to and certified by regulations for working with biohazardous materials. NAIT follows the regulations identified in the Human Pathogens and Toxins Act (HPTA).</p><br>
  
high popularity. Negatively charged proteins migrate towards the positive electrode
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<p>Based on the <i>Canadian Biosafety Standards and Guidelines</i> 1st edition, NAIT only has laboratories that can handle Risk Level Group 1 and 2 pathogens and toxins. Standard operating procedures are developed for all labs and facilities within NAIT that handles said pathogens and toxins. Additionally, all staff and students who enter appropriate labs, and handle or dispose of these pathogens undergo a biosafety training session. Appropriate training records are also maintained. 
  
according to their size and charge. Smaller proteins migrate further in a given amount of
 
  
time. As proteins are separated in this manner, users load molecular weight standards
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</p>
  
to estimate the size (in kDa) of the proteins present in their sample. Once the proteins of
 
  
a single sample have been isolated and are embedded in the polyacrylamide (PA) gel
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matrix, staining procedures are used to visualize them.</p>
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<div class="accordion-section">
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<a class="accordion-section-title" href="#accordion-3" style="background-color:#FBB252">Risks for our Project</a>
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<div id="accordion-3" class="accordion-section-content">
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<p><b>Risks to the Safety and Health of Team Members or Others in Lab</b></p><br>
  
<br>
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<p>In our lab, we use <i>Escherichia coli</i> as our miniature factories to produce our desired proteins. According to the <i>Canadian Biosafety Standards and Guidelines, E. coli</i> is classified as RG2 meaning that it is a pathogen that is very unlikely to cause human disease or pose a serious hazard to laboratory workers. However, some bacteria may be opportunistic pathogens and may cause harm to immunocompromised individuals. For E. coli there are effective treatments and preventative measures available. </p><br>
  
<center><img src="http://upload.wikimedia.org/wikipedia/commons/4/46/SDS-PAGE_Electrophoresis.png" width="750px"></center>
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<p>During agarose gel electrophoresis, we use ethidium bromide to stain and visualize the bands of DNA. Ethidium bromide is a known mutagen and contact with skin may cause genetic defects. Additionally, in SDS PAGE, TEMED is used which is harmful if inhaled or ingested by the laboratory technician. Many of our reagents must be handled carefully as to prevent skin or eye contact.</p><br>
  
<br>
 
  
<p style="font-size:15;">Organic dyes, such as Coomassie blue, can be used for this purpose;
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<b><p>Risks to the Safety and Health of the General Public or Environment</p><br></b>
  
nevertheless, their low sensitivity and a detection range that goes from 1 to 50 ng can
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<p>
  
be a challenge for detecting low abundance proteins (Jin, Huang, Yoo, & Choi, 2006). A
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The novel proteins we are creating have never been studied and thus we are not sure about how they will affect our environment.
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There is no direct contact of our strains of E. coli with the environment outside the laboratory and therefore, our project provides no remarkable risk to the general public. Any equipment that is exposed to bacteria is sterilized properly either by an autoclave or bactericides. </p><br>
  
higher sensitivity can be achieved by fluorescent staining techniques (from 0.1 to 10
 
  
ng.); however, UV instruments are necessary in order to read the data (Jin et al., 2006).  
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<p>In staining, our silver solutions (a heavy metal) have the potential to bioaccumulate. Heavy metals can enter our water supply if not disposed of properly.  
  
The most sensitive method up to date is radiolabeling, but the requirement of hazardous
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</p>
 
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isotopes and their complex management makes it a complicated procedure (Jin et al.,
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2006). Silver staining is a method that offers great sensitivity and an easy to handle
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protocol, thus making it one of the most commonly used staining methods. </p>
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<br>
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<center><img src="http://www.bio-rad.com/webroot/web/images/lsr/products/electrophoresis/product_overlay_content/global/lsr_biosafe_coomasie_gel.jpg"></center>
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<div class="accordion-section">
 
<div class="accordion-section">
<a class="accordion-section-title" href="#accordion-2">The Problem</a>
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<a class="accordion-section-title" href="#accordion-4" style="background-color: #f7e133">Measures to Reduce Risk</a>
<div id="accordion-2" class="accordion-section-content">
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<div id="accordion-4" class="accordion-section-content">
<p>As part of our institution's guidelines, it is mandatory for every student to take the Safety Course organized by the department's Safety Committee. In addition, all team members received the standard lab training from our supervisors. </p><br>
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<p>
  
<p>The topics taught ranged from personal protection such as appropriate clothing when working in the lab, which includes wearing a lab coat, gloves, goggles, no contact lenses, long trousers and appropriate shoes, to general lab rules like no food and drinks (also no storage in lab fridges) and no smoking. Further topics included maintenance of a clean workspace, correct labeling and storage of chemicals and biological substances, and instructions on transportation of chemicals and solvents in the building (not in the passenger elevator but in the freight elevator and the usage of correct chemical container in a bucket).</p><br>
 
  
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<p><b>Reducing Risk for Team Members</b></p><br>
  
<p>We were also instructed to take extra measures when working with flammable substances (especially ethanol) and people with long hair were instructed to tie their hair back when working with a flame. We also received detailed instructions on handling substances with known dangers such as acids, bases, methanol, ethidium bromide, ethers, or ethanol, and the use of safety tools such as eye shower and fume hoods were introduced. </p><br>
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<p>To reduce the risk of contamination or exposure to E. coli, our team works in a certified BioSafety Cabinet. Additionally, we take appropriate precautions when handling the organisms including wearing proper PPE (see figures below). We always wear our PPE when handling our reagents or conducting any experiments. </p><br>
  
<p>Furthermore we were instructed how to react in case of emergencies such as fire or accidents. We discussed different scenarios and correct behavior. Important phone numbers and contact persons were introduced. We learnt how to treat people with minor injuries such as cuts or burns. The importance of seeing a physician after an incident was emphasized. </p>
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        <div class="roundimg"><img src="https://static.igem.org/mediawiki/2015/8/80/NAIT_Gloves.png" alt="" title="" /></a></div>
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Gloves
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        <div class="roundimg"><img src="https://static.igem.org/mediawiki/2015/3/37/NAIT_SafetyGoggles.png" alt="" title="" /></a></div>
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Safety Glasses
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<div class="accordion-section">
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  <div class="section_one_three">
<a class="accordion-section-title" href="#accordion-3">Risks for our Project</a>
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        <div class="roundimg"><img src="https://static.igem.org/mediawiki/2015/2/25/NAIT_Smoc.png" alt="" title="" /></a></div>
<div id="accordion-3" class="accordion-section-content">
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        <p class="centered_text">
<p><b>Risks to the safety and health of team members, or other people working in the lab</b></p><br>
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Lab Coat
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        </p>
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<p>According to the WHO bio-safety manuscript and the applicable national rules, the organisms used by our team belong to the category of Risk Level 1. Organisms of this level are considered as unlikely to cause human or animal disease. </p><br>
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<p><b>Reducing Risk for the General Public and Environment</b></p><br>
  
<p>Since all strains used and all those which are intended to be used in the future are harmless in terms of pathogenicity and toxicity, these organisms or biological parts do not raise major safety concerns. The work in the wet-lab is carried out in a S1 laboratory with conventional safety standards. Regular safety precautions such as wearing gloves, glasses and a lab coat to protect us are implemented. No bacteria are released into the environment and all material contaminated with bacteria was autoclaved at 120 degrees Celsius and 1 bar overpressure. All chemicals used for the project were collected and disposed separately. </p><br>
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<p>The health of the general public and the environment is very important to our team. Although the novel proteins we are constructing have unknown functions and effects, our entire project requires us to denature and essentially de-activate them. Therefore, we are certain that the denatured proteins will not have any downstream effects on our environment. </p><br>
  
<b><p>Risks to the safety and health of the general public and the environment</p><br></b>
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<p>When disposing our reagents after an experiment, we follow the guidelines specified in NAIT’s Bio Safety program. Specifically, our silver solutions are placed into heavy metal disposal buckets and disposed of carefully as to not affect our environment</p>
  
<p>All experiments involving live bacteria were conducted in an environment designed to contain bacteria. Therefore, there is no direct contact with the environment outside the laboratory and therefore, together with the fact that the involved bacteria are of biosafety level 1, our project provides no remarkable risk to the general public. Since all team members are following Good Laboratory Practices (GLP), we are working on a good basis to prevent the unintended release and spread of bacterial cultures. Safety measures like autoclaving and protective equipment will mitigate the risks to the environment.</p>
 
  
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<div class="accordion-section">
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<a class="accordion-section-title" href="#accordion-4">Measures to Reduce Risk</a>
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</p>
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<input class="modal-state" id="reagents" type="checkbox" />
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    <center><h1>Reagents Used</h1></center>
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    <p>Silver Staining</p><br>
 +
    <p>Cloning and Transforming Cells </p><br>
 +
    <p>Making Agarose and PA Gels</p><br>
 
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Latest revision as of 04:15, 16 September 2015

Team NAIT 2015

Lab Safety

iGEM teams follow a high standard of safe and responsible biological engineering. Because we are members of the synthetic biology community, we are responsible for living up to the trust placed in us to design, build, and share biological devices safely.





Safety Training

Our institution is committed to providing a safe work environment. As such, the NAIT Biosafety program ensures that potentially biohazardous materials used for our research are used only by students and staff that have had appropriate training. All the NAIT laboratories are compliant to and certified by regulations for working with biohazardous materials. NAIT follows the regulations identified in the Human Pathogens and Toxins Act (HPTA).


Based on the Canadian Biosafety Standards and Guidelines 1st edition, NAIT only has laboratories that can handle Risk Level Group 1 and 2 pathogens and toxins. Standard operating procedures are developed for all labs and facilities within NAIT that handles said pathogens and toxins. Additionally, all staff and students who enter appropriate labs, and handle or dispose of these pathogens undergo a biosafety training session. Appropriate training records are also maintained.

Risks for our Project

Risks to the Safety and Health of Team Members or Others in Lab


In our lab, we use Escherichia coli as our miniature factories to produce our desired proteins. According to the Canadian Biosafety Standards and Guidelines, E. coli is classified as RG2 meaning that it is a pathogen that is very unlikely to cause human disease or pose a serious hazard to laboratory workers. However, some bacteria may be opportunistic pathogens and may cause harm to immunocompromised individuals. For E. coli there are effective treatments and preventative measures available.


During agarose gel electrophoresis, we use ethidium bromide to stain and visualize the bands of DNA. Ethidium bromide is a known mutagen and contact with skin may cause genetic defects. Additionally, in SDS PAGE, TEMED is used which is harmful if inhaled or ingested by the laboratory technician. Many of our reagents must be handled carefully as to prevent skin or eye contact.


Risks to the Safety and Health of the General Public or Environment


The novel proteins we are creating have never been studied and thus we are not sure about how they will affect our environment. There is no direct contact of our strains of E. coli with the environment outside the laboratory and therefore, our project provides no remarkable risk to the general public. Any equipment that is exposed to bacteria is sterilized properly either by an autoclave or bactericides.


In staining, our silver solutions (a heavy metal) have the potential to bioaccumulate. Heavy metals can enter our water supply if not disposed of properly.

Measures to Reduce Risk

Reducing Risk for Team Members


To reduce the risk of contamination or exposure to E. coli, our team works in a certified BioSafety Cabinet. Additionally, we take appropriate precautions when handling the organisms including wearing proper PPE (see figures below). We always wear our PPE when handling our reagents or conducting any experiments.


Gloves

Safety Glasses

Lab Coat

Reducing Risk for the General Public and Environment


The health of the general public and the environment is very important to our team. Although the novel proteins we are constructing have unknown functions and effects, our entire project requires us to denature and essentially de-activate them. Therefore, we are certain that the denatured proteins will not have any downstream effects on our environment.


When disposing our reagents after an experiment, we follow the guidelines specified in NAIT’s Bio Safety program. Specifically, our silver solutions are placed into heavy metal disposal buckets and disposed of carefully as to not affect our environment