Difference between revisions of "Team:SYSU-Software/Collaborations"

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          <h1>Collaborations</h1>
  
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<h2> Collaborations</h2>
 
  
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<p>
 
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Sharing and collaboration are core values of iGEM. We encourage you to reach out and work with other teams on difficult problems that you can more easily solve together.
 
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          <div id = "Keyachievements">
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            <h2>Key achievements</h2>
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            <h3>Collaborated with 2015 iGEM teams, we…</h3>
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            <ol>
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              <li>together with <span>NJU-China</span>, developed a tool for tracking mouse movements.<a href="https://2015.igem.org/Team:NJU-China">Download online.</a></li>
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              <li>Mentored high-school teams <span>SKLBC-China</span> and <span>SKLBC-DGSYZX</span> on software project planning.</li>
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              <li>Collaborated with <span>SYSU_CHINA</span> and held a garden party.</li>
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            </ol>
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            <h3>Collaborated with Academic Division of Youth League Committee, we…</h3>
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            <p id = "pp">held a mini-lecture on iGEM and Synbio to the 2015 freshmen of School of Life Sciences.</p>
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          </div>
  
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<h4> Which other teams can we work with? </h4>
 
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<p>
 
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You can work with any other team in the competition, including software, hardware, high school and other tracks. You can also work with non-iGEM research groups, but they do not count towards the <a hreef="https://2015.igem.org/Judging/Awards#Medals">iGEM team collaboration gold medal criterion</a>.
 
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<p>
 
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In order to meet the gold medal criteria on helping another team, you must complete this page and detail the nature of your collaboration with another iGEM team.
 
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          <div id = "NJU_China">
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Here are some suggestions for projects you could work on with other teams:
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            <h2>Development of Mouse Movement Tracking Tool for <a href="https://2015.igem.org/Team:NJU-China">NJU-China</a></h2>
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</p>
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            <div id = "NJU_block1">
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<li> Improve the function of another team's BioBrick Part or Device</li>
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                <div id = "NJU_block1_zuo" class = "wenzi">During their project, 2015 wet-lab team NJU-China needs a tool that can track the dynamic movement of mice in the cage.<br><br><br><b>Demand</b>: In their in vivo experiment, they recorded the movement of mice in the cage. The video was about two hours long. Then they needed a tool to fulfill the following three requirements.<br><br><br>
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<li> Characterize another team's part </li>
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                <ol>
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<li> Debug a construct </li>
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                  <li>The tool should be able to identify the existence of the mice in the cage. The problem is that the mice was always moving, and the tool must set a point on the mice to track their movement.</li>
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<li> Model or simulating another team's system </li>
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                  <li>The tool should be able to record the coordinate of the mice’s current position.</li>
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<li> Test another team's software</li>
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                  <li>The tool should be able to generate a heat map, to show how frequently the mice stayed in the light cage and in the dark cage.</li>
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<li> Help build and test another team's hardware project</li>
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                </ol>
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<li> Mentor a high-school team</li>
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                </div>
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</ul>
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                <div id = "NJU_block1_you" class = "juzhong">
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                  <img src = "https://static.igem.org/mediawiki/2015/b/b6/SYSU-Software_mice.jpg">
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                  Figure 1: Tracking of mouse movements in the cage.
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                </div>
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            </div>
  
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            <div id = "NJU_block2" class = "wenzi" >
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                <br><br>
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                Tools that can track the movement of mice exist; however, they can only track the movement qualitatively, without the detailed records of coordinates of mouse position.
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                <img src = "https://static.igem.org/mediawiki/2015/5/53/SYSU-Software_coordinates.png">
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                <p class = "juzhong">Figure 2: Positions of the mouse at different times represented as coordinates.</p>
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            </div>
  
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            <div id = "NJU_block3">
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                <br><br><br>
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                <div id = "NJU_block3_zuo" class = "wenzi">
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                  <b>Solution</b>: According to their demand, we developed a tool in July. This tool can not only track the movement of mice in the cage, but also record the coordinates of mice’s position as well as accordingly generate a heat map.<br>
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                  To Download the tool, please click <a href="https://2015.igem.org/Team:NJU-China">here</a>!
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                </div>
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                <div id = "NJU_block3_you">
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                  <img src = "https://static.igem.org/mediawiki/2015/0/00/SYSU-Software_heatmap.png">
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                  Figure 3: A heat map generated by the tool, showing the relative frequency with which mice stayed in particular position.
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                </div>
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            </div>
  
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            <div id = "SKLBC_China">
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              <h2>Mentor on Software Building for High-School Team <a href="https://2015.igem.org/Team:SKLBC-China">SKLBC-China</a> and <a href="https://2015.igem.org/Team:SKLBC-DGSYZX">SKLBC-DGSYZX</a></h2>
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              <div id = "SKLBC_block1">
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                  <div id = "SKLBC_block1_zuo" class = "wenzi">
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                    During the summer, a meetup was held in Sun Yat-sen University. There were wet-lab teams (SCUT-China, SCUT and SYSU-China), a software team (SYSU-Software) as well as high-school teams (SKLBC-China and SKLBC-GDSYZX). <br><br>
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                    In the meetup we talked about the relationships between software teams and wet-lab teams. Zhengyang Wen and Shengkun Dai, team members of us, gave advice on project design to  members of high-school teams SKLBC-China and SKLBC-GDSYZX. Wen and Dai taught them how to discover the needs of wet-lab teams, and gave them advice on how to design software that meets the needs of wet-lab teams. Also, we gave
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                    them instructions on scheduling the project. 
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                  </div>
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                  <div id = "SKLBC_block1_you" class = "juzhong">
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                    <img src = "https://static.igem.org/mediawiki/2015/e/e7/SYSU-Software_highschool.JPG">
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                    Figure 4: A meetup in Sun Yat-sen University
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                  </div>
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              </div>
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              <div id = "SKLBC_block2">
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                  <br><br>
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                  <div id = "SKLBC_block2_zuo">
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                    <img src = "https://static.igem.org/mediawiki/2015/0/00/SYSU-Software_instructions_2.jpg">
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                    Figure 5: Dai and Wen talked about how to plan different aspects of a project.
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                  </div>
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                  <div id = "SKLBC_block2_you">
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                    <img src = "https://static.igem.org/mediawiki/2015/5/5b/SYSU-Software_Dai.png">
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                    Figure 6: Dai gave a presentation on how software teams
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                    can meet the needs of wet-lab practices.
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                  </div>
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              </div>
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            </div>
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            <div id = "SYSU_CHINA">
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                <h2>Collaborated with <a href="https://2015.igem.org/Team:SYSU_CHINA">SYSU_CHINA</a> and held a garden party in Biology Festival</h2>
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                <div id = "SYSU_block1">
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                  <div id = "SYSU_block1_zuo" class = "wenzi">
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                    In spring we held a garden party in the campus with SYSU_CHINA. This activity aimed at introducing synthetic biology to the public, and engage the public in the practices of iGEM. In the garden party, we made use of various kinds of activities and games to introduce the basic ideas of Synbio and iGEM. SYSU_CHINA introduced how experimental iGEMers did great jobs in a living cells, while we talked about how software can help explore the extraordinary world of life made up of DNA.
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                  </div>
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                  <div id = "SYSU_block1_you" class = "juzhong">
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                    <img src = "https://static.igem.org/mediawiki/2015/c/cf/SYSU-Software_gardenParty.jpg">
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                    Figure 7: Festival
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                  </div>
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                </div>
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            </div>
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            <div id = "Academic">
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                <h2>Collaborated with Academic Division of Youth League Committee and gave mini lecture to freshmen</h2>
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                <div id = "Academic_block1">
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                  <div id = "Academic_block1_zuo" class = "wenzi">
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                    In early September we held a mini-lecture to 2015 freshmen of School of Life Sciences of SYSU. In the lecture we told freshmen about the basic knowledge and ideas of Synbio, and motivated them to participate in iGEM.
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                  </div>
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                  <div id = "Academic_block1_you" class = "juzhong">
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                    <img src = "poster.jpg">
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                    Figure 8: A mini lecture to freshmen.
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                  </div>
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                </div>
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            </div>
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Revision as of 08:13, 16 September 2015

SYSU-SOFTWARE IGEM 2015

Collaborations

Key achievements

Collaborated with 2015 iGEM teams, we…

  1. together with NJU-China, developed a tool for tracking mouse movements.Download online.
  2. Mentored high-school teams SKLBC-China and SKLBC-DGSYZX on software project planning.
  3. Collaborated with SYSU_CHINA and held a garden party.

Collaborated with Academic Division of Youth League Committee, we…

held a mini-lecture on iGEM and Synbio to the 2015 freshmen of School of Life Sciences.

Development of Mouse Movement Tracking Tool for NJU-China

During their project, 2015 wet-lab team NJU-China needs a tool that can track the dynamic movement of mice in the cage.


Demand: In their in vivo experiment, they recorded the movement of mice in the cage. The video was about two hours long. Then they needed a tool to fulfill the following three requirements.


  1. The tool should be able to identify the existence of the mice in the cage. The problem is that the mice was always moving, and the tool must set a point on the mice to track their movement.
  2. The tool should be able to record the coordinate of the mice’s current position.
  3. The tool should be able to generate a heat map, to show how frequently the mice stayed in the light cage and in the dark cage.
Figure 1: Tracking of mouse movements in the cage.


Tools that can track the movement of mice exist; however, they can only track the movement qualitatively, without the detailed records of coordinates of mouse position.

Figure 2: Positions of the mouse at different times represented as coordinates.




Solution: According to their demand, we developed a tool in July. This tool can not only track the movement of mice in the cage, but also record the coordinates of mice’s position as well as accordingly generate a heat map.
To Download the tool, please click here!
Figure 3: A heat map generated by the tool, showing the relative frequency with which mice stayed in particular position.

Mentor on Software Building for High-School Team SKLBC-China and SKLBC-DGSYZX

During the summer, a meetup was held in Sun Yat-sen University. There were wet-lab teams (SCUT-China, SCUT and SYSU-China), a software team (SYSU-Software) as well as high-school teams (SKLBC-China and SKLBC-GDSYZX).

In the meetup we talked about the relationships between software teams and wet-lab teams. Zhengyang Wen and Shengkun Dai, team members of us, gave advice on project design to members of high-school teams SKLBC-China and SKLBC-GDSYZX. Wen and Dai taught them how to discover the needs of wet-lab teams, and gave them advice on how to design software that meets the needs of wet-lab teams. Also, we gave them instructions on scheduling the project.
Figure 4: A meetup in Sun Yat-sen University


Figure 5: Dai and Wen talked about how to plan different aspects of a project.
Figure 6: Dai gave a presentation on how software teams can meet the needs of wet-lab practices.

Collaborated with SYSU_CHINA and held a garden party in Biology Festival

In spring we held a garden party in the campus with SYSU_CHINA. This activity aimed at introducing synthetic biology to the public, and engage the public in the practices of iGEM. In the garden party, we made use of various kinds of activities and games to introduce the basic ideas of Synbio and iGEM. SYSU_CHINA introduced how experimental iGEMers did great jobs in a living cells, while we talked about how software can help explore the extraordinary world of life made up of DNA.
Figure 7: Festival

Collaborated with Academic Division of Youth League Committee and gave mini lecture to freshmen

In early September we held a mini-lecture to 2015 freshmen of School of Life Sciences of SYSU. In the lecture we told freshmen about the basic knowledge and ideas of Synbio, and motivated them to participate in iGEM.
Figure 8: A mini lecture to freshmen.