Difference between revisions of "Template:Team:TU Eindhoven/Modeling Script HTML"
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| − | <li> Length of Linker (nm): The contour length of the modeled linker in nanometers. The value we used for our simulation was 28.4 nm; the linker consists of | + | <li> Length of Linker (nm): The contour length of the modeled linker in nanometers. The value we used for our simulation was 28.4 nm; the linker consists of 71 amino acids that each have a contour length of 0.4 nanometers [1]</li> |
| − | <li> Persistence Length of Linker (nm): The persistence length that is characteristic for the used material </li> | + | <li> Persistence Length of Linker (nm): The persistence length that is characteristic for the used material. The value we used was 0.45 nanometers </li> |
<li> 1 </li> | <li> 1 </li> | ||
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Revision as of 13:16, 17 September 2015
Modeling Script
Model input
A short description, the input parameters and output data are explained for the four submodels below:
Linker Simulation (Distance)
.
This model calculates the effect of the linker on the distance between the intracellular domains. It's output file consists of a list of numbers. Each number represents the distance between the intracellular domains that was calculated in one iteration. The input parameters and used values to obtain our results are shown below:
- Length of Linker (nm): The contour length of the modeled linker in nanometers. The value we used for our simulation was 28.4 nm; the linker consists of 71 amino acids that each have a contour length of 0.4 nanometers [1]
- Persistence Length of Linker (nm): The persistence length that is characteristic for the used material. The value we used was 0.45 nanometers
- 1
Linker Simulation (BRET/FRET)
.
text for model 2
Total System Simulation
.
text for model 3
Aptamer Binding Simulation
.
text for model 4