Difference between revisions of "Team:CHINA CD UESTC/Collaborations"

 
(33 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
{{Template:Team:CHINA_CD_UESTC/menu}}
 
{{Template:Team:CHINA_CD_UESTC/menu}}
 +
{{Template:Team:CHINA_CD_UESTC/cssstyle}}
 +
 +
 +
 
<!DOCTYPE html>
 
<!DOCTYPE html>
−
<!-- saved from url=(0028)http://www.whitefrontier.ch/ -->
 
 
<html>
 
<html>
 
<head>
 
<head>
  
−
<link rel="stylesheet" href="https://2015.igem.org/Team:CHINA_CD_UESTC/Template:RightStyle.css?action=raw&ctype=text/css" type="text/css" />
 
 
</head>
 
</head>
  
Line 29: Line 31:
  
 
}
 
}
−
#title {
+
#HZpic {
−
left:450px;
+
    background-position: 0 0 !important;
 +
    width: 100%;
 +
    padding: 10px 10% 20px 15%;
 +
    margin-top: 20px;
 
}
 
}
 +
#RightContentText a{
 +
color: #007D92;
 +
}
 +
 
</style>
 
</style>
 
<body id="homeIndexBody">
 
<body id="homeIndexBody">
Line 49: Line 58:
 
<div class="transparent_class ">
 
<div class="transparent_class ">
 
<p class="blockWords">
 
<p class="blockWords">
−
&nbsp;&nbsp;This is the list of contributions and the use of resources of our all team members throughout the whole iGEM competition. In brief, our team is composed of 11 undergraduates and 4 instructors who are together to complete the project. What we represent about our entire final results all come from our 11 students. Hope this page can provide you with a clear message.
+
&nbsp;&nbsp;This year the collaboration of our team with SCU_China team and UESTC-software team were very smoothly as expected. We helped each other from the aspects of experimental design, experiment results verification and software to reach the iGEM spirit of resource sharing. The following is a detailed description.
 
</p>
 
</p>
 
</div>
 
</div>
Line 56: Line 65:
 
<div class="slide" id="slide2" data-slide="2" data-stellar-background-ratio="0.5" style="background-position: 0px 669px;">
 
<div class="slide" id="slide2" data-slide="2" data-stellar-background-ratio="0.5" style="background-position: 0px 669px;">
 
<div class="container clearfix">
 
<div class="container clearfix">
−
 
−
<div id="content" class="grid_12">
 
−
<h2>About Me</h2>
 
−
</div>
 
−
<div class="clear"></div>
 
−
 
 
<div id="content">
 
<div id="content">
 
<div class="grid_8">
 
<div class="grid_8">
−
<h4>Biography</h4>
 
 
<p>
 
<p>
−
Morbi rutrum, elit ac fermentum egestas, tortor ante vestibulum est, eget scelerisque nisl velit eget tellus. Fusce porta facilisis luctus. Integer neque dolor, rhoncus nec euismod eget, pharetra et tortor. Nulla id pulvinar nunc. Vestibulum auctor nisl vel lectus ullamcorper sed pellentesque dolor eleifend. Praesent lobortis magna vel diam mattis sagittis.
+
In 2015 iGEM, we CHINA_CD_UESTC team collaborated with SCU_China team and UESTC-software team. We communicated several times, helped each other and shared our resources, which generated a great atmosphere of cooperation and mutual assistance. Indeed, we helped SCU_China team finish the prediction and experiment design about RBS in their project.
 
</p>
 
</p>
 +
<div id="HZpic">
 +
<img src="https://static.igem.org/mediawiki/2015/c/c6/CHINA_CD_UESTC_COLLABORATION05.jpg" width="70%" height="80%"></div>
 +
<div class="list_txt">
 +
<p>In this process, our team had completed two aspects of the collaboration work:</p>
 +
<ul>
 +
<li>
 +
<h5>(1) Help SCU_China team to design the experiments and complete the experimental demonstration of RBS forecast outcomes.</h5>
 +
</li>
 +
<li>
 +
<h5>(2) Provide the theoretical support of developing SD Finder software aiming to predict the ribosome binding site (RBS) position to UESTC-software team.</h5>
 +
</li>
 +
</ul>
 +
</div>
 +
 +
<div id="content" class="grid_12">
 +
<h2>Design experiments for SCU_China team</h2>
 +
</div>
 +
<div class="clear"></div>
 
<p>
 
<p>
−
Mauris porta odio eu risus scelerisque id facilisis ipsum dictum vitae volutpat. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Sed pulvinar neque eu purus sollicitudin et sollicitudin dui ultricies. Maecenas cursus auctor tellus sit amet blandit. Maecenas a erat ac nibh molestie interdum. Class aptent taciti sociosqu ad litora torquent per conubia nostra, per inceptos himenaeos. Sed lorem enim, ultricies sed sodales id, convallis molestie ipsum. Morbi eget dolor ligula. Vivamus accumsan rutrum nisi nec elementum. Pellentesque at nunc risus. Phasellus ullamcorper bibendum varius.  Quisque quis ligula sit amet felis ornare porta. Aenean viverra lacus et mi elementum mollis. Praesent eu justo elit.
+
We helped SCU_China team design the experiment. In order to find the unknown RBS position and standard it, we designed the folowing experiments for them:
 
</p>
 
</p>
−
</div>
+
<div class="project_pic">
−
<div class="clear"></div>
+
<p id="pic_title">1. Demonstration of RBS located in upstream of the gene <i>nifD</i></p>
 +
<img src="https://static.igem.org/mediawiki/2015/e/ea/CHINA_CD_UESTC_COLLABORATION01.png" width="60%">
 +
<p id="pic_illustration"></p>
 +
</div>
 +
<div class="project_pic">
 +
<p id="pic_title">2. Mutant demonstration of RBS located in upstream of the gene <i>nifD</i></p>
 +
<img src="https://static.igem.org/mediawiki/2015/8/8b/CHINA_CD_UESTC_COLLABORATION02.png" width="60%">
 +
<p id="pic_illustration"></p>
 +
</div>
 +
<div class="project_pic">
 +
<p id="pic_title">3. Demonstration of RBS located in upstream of the gene <i>nifK</i></p>
 +
<img src="https://static.igem.org/mediawiki/2015/7/79/CHINA_CD_UESTC_COLLABORATION03.png" width="60%">
 +
<p id="pic_illustration"></p>
 +
</div>
 +
<div class="project_pic">
 +
<p id="pic_title">4. Mutant demonstration of RBS located in upstream of the gene <i>nifK</i></p>
 +
<img src="https://static.igem.org/mediawiki/2015/8/84/CHINA_CD_UESTC_COLLABORATION04.png" width="60%">
 +
<p id="pic_illustration"></p>
 +
</div>
 +
<p>CHINA_CD_UESTC team finally completed the design of these experiments, which helped SCU_China team accomplish the work of forecast RBS position.</p>
  
−
</div>
+
<div id="content" class="grid_12">
−
 
+
<h2>SD Finder Theoretical Support</h2>
−
</div>
+
</div>
−
</div>
+
<div class="clear"></div>
−
 
+
−
<div class="slide" id="slide2" data-slide="4" data-stellar-background-ratio="0.5" style="background-position: 0px 669px;">
+
−
<div class="container clearfix">
+
−
 
+
−
<div id="content" class="grid_12">
+
−
<h2>About Me</h2>
+
−
</div>
+
−
<div class="clear"></div>
+
−
 
+
−
<div id="content">
+
−
<div class="grid_8">
+
−
<h4>Biography</h4>
+
 
<p>
 
<p>
−
Morbi rutrum, elit ac fermentum egestas, tortor ante vestibulum est, eget scelerisque nisl velit eget tellus. Fusce porta facilisis luctus. Integer neque dolor, rhoncus nec euismod eget, pharetra et tortor. Nulla id pulvinar nunc. Vestibulum auctor nisl vel lectus ullamcorper sed pellentesque dolor eleifend. Praesent lobortis magna vel diam mattis sagittis.
+
It was in our theoretical knowledge support that UESTC-software team helped SCU_China team develop a RBS prediction software which named SD Finder. The two teams, CHINA_CD_UESTC team and UESTC-software team, made up deficiencies in theoretical support and software technology to each other and cooperated to complete the SD Finder smoothly. The main function of SD Finder is helping user predict the ORF and SD sequence of DNA sequence. Software links below:
−
</p>
+
−
<p>
+
−
Mauris porta odio eu risus scelerisque id facilisis ipsum dictum vitae volutpat. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Sed pulvinar neque eu purus sollicitudin et sollicitudin dui ultricies. Maecenas cursus auctor tellus sit amet blandit. Maecenas a erat ac nibh molestie interdum. Class aptent taciti sociosqu ad litora torquent per conubia nostra, per inceptos himenaeos. Sed lorem enim, ultricies sed sodales id, convallis molestie ipsum. Morbi eget dolor ligula. Vivamus accumsan rutrum nisi nec elementum. Pellentesque at nunc risus. Phasellus ullamcorper bibendum varius.  Quisque quis ligula sit amet felis ornare porta. Aenean viverra lacus et mi elementum mollis. Praesent eu justo elit.
+
 
</p>
 
</p>
 +
<a href="http://cefg.cn/Igem2015/mccap-server/app/tools/sdFinder.php">
 +
<p>http://cefg.cn/Igem2015/mccap-server/app/tools/sdFinder.php</p>
 +
</a>
 +
<div id="HZpic">
 +
<img src="https://static.igem.org/mediawiki/2015/6/68/CHINA_CD_UESTC_COLLABORATION06.png" width="80%" height="80%"></div>
 
</div>
 
</div>
−
<div class="clear"></div>
 
  
 
</div>
 
</div>
−
 
 
</div>
 
</div>
 
</div>
 
</div>
−
 
 
</div>
 
</div>
 
</div>
 
</div>
−
 
 
</body>
 
</body>
  
 
</html>
 
</html>

Latest revision as of 00:33, 18 September 2015


<!DOCTYPE html>

COLLABORATIONS

  This year the collaboration of our team with SCU_China team and UESTC-software team were very smoothly as expected. We helped each other from the aspects of experimental design, experiment results verification and software to reach the iGEM spirit of resource sharing. The following is a detailed description.

In 2015 iGEM, we CHINA_CD_UESTC team collaborated with SCU_China team and UESTC-software team. We communicated several times, helped each other and shared our resources, which generated a great atmosphere of cooperation and mutual assistance. Indeed, we helped SCU_China team finish the prediction and experiment design about RBS in their project.

In this process, our team had completed two aspects of the collaboration work:

  • (1) Help SCU_China team to design the experiments and complete the experimental demonstration of RBS forecast outcomes.
  • (2) Provide the theoretical support of developing SD Finder software aiming to predict the ribosome binding site (RBS) position to UESTC-software team.

Design experiments for SCU_China team

We helped SCU_China team design the experiment. In order to find the unknown RBS position and standard it, we designed the folowing experiments for them:

1. Demonstration of RBS located in upstream of the gene nifD

2. Mutant demonstration of RBS located in upstream of the gene nifD

3. Demonstration of RBS located in upstream of the gene nifK

4. Mutant demonstration of RBS located in upstream of the gene nifK

CHINA_CD_UESTC team finally completed the design of these experiments, which helped SCU_China team accomplish the work of forecast RBS position.

SD Finder Theoretical Support

It was in our theoretical knowledge support that UESTC-software team helped SCU_China team develop a RBS prediction software which named SD Finder. The two teams, CHINA_CD_UESTC team and UESTC-software team, made up deficiencies in theoretical support and software technology to each other and cooperated to complete the SD Finder smoothly. The main function of SD Finder is helping user predict the ORF and SD sequence of DNA sequence. Software links below:

http://cefg.cn/Igem2015/mccap-server/app/tools/sdFinder.php