Difference between revisions of "Team:Bordeaux/Description"
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<h6 align="justify"> <i> <FONT color="#8b008b"> « Ok and how will Curdlan be useful to you? » </FONT> </i> </h6> | <h6 align="justify"> <i> <FONT color="#8b008b"> « Ok and how will Curdlan be useful to you? » </FONT> </i> </h6> | ||
<h6 align="justify"> <i> <FONT color="#00843c"> « Let me explain our purpose. » </FONT> </i> </h6> <br> | <h6 align="justify"> <i> <FONT color="#00843c"> « Let me explain our purpose. » </FONT> </i> </h6> <br> | ||
− | <p align="justify" style="text-indent: 3vw;"> Curdlan belongs to the class of biological response modifiers that <b>enhance or restore normal natural defenses</b>. For example, it can have antitumor, anti-infective, anti-inflammatory, and anticoagulant activities (see other properties of Curdlan). In particular, this | + | <p align="justify" style="text-indent: 3vw;"> Curdlan belongs to the class of biological response modifiers that <b>enhance or restore normal natural defenses</b>. For example, it can have antitumor, anti-infective, anti-inflammatory, and anticoagulant activities (see other properties of Curdlan). In particular, this (1→3)-β-glucan can <b>stimulate plants' natural defenses</b>. </p> |
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− | <p align="justify" style="text-indent: 3vw;"> More precisely, applied to grapevine plants, <b> sulfated ß-glucans </b> induce the <b> accumulation of phytoalexins </b> (organic antimicrobial substances) and the <b> expression of a set of Pathogenesis-Related proteins </b>. In plants, the fact that oligosaccharides must carry crucial sulfates for their biological function suggests that <b>chemical sulfation</b> of oligosaccharides <b>can improve their biological properties.</b> In recents studies, compared to Laminarin (ß-glucan), its sulfated derivative triggered an enhanced immunity against <i>P. viticola</i> in <i>V. vinifera</i> and a stronger immunity against TMV in <i>Nicotiana tabacum</i>. The results indicate that the chemical modification of an elicitor, such as sulfated derivative of ß-glucans, could improve its resistance-inducer efficiency. Moreover, if a ß-glucan is a substrate for plant | + | <p align="justify" style="text-indent: 3vw;"> More precisely, applied to grapevine plants, <b> sulfated ß-glucans </b> induce the <b> accumulation of phytoalexins </b> (organic antimicrobial substances) and the <b> expression of a set of Pathogenesis-Related proteins </b>. In plants, the fact that oligosaccharides must carry crucial sulfates for their biological function suggests that <b>chemical sulfation</b> of oligosaccharides <b>can improve their biological properties.</b> In recents studies, compared to Laminarin (ß-glucan), its sulfated derivative triggered an enhanced immunity against <i>P. viticola</i> in <i>V. vinifera</i> and a stronger immunity against TMV in <i>Nicotiana tabacum</i>. The results indicate that the chemical modification of an elicitor, such as sulfated derivative of ß-glucans, could improve its resistance-inducer efficiency. Moreover, if a ß-glucan is a substrate for plant (1→3)-β-glucanase, its <b>sulfation</b> clearly <b>protects the molecule</b> from its enzymatic degradation. Thus, a basal activity of plant glucanases can degrade ß-glucans and consequently releases short inactive ß-glucans; whereas sulfated derivatives still remain active molecules during a longer period. This might explain the higher resistance induced by ß-glucan sulfates compared to ß-glucans. </p> |
− | <p align="justify"style="text-indent: 3vw;"> Furthermore, non-sulfated Curdlan doesn't trigger the response through a mutant gene: pmr4. This <b>mutant</b> is resistant to mildew infections but is <b> unable to induce Pathogenesis-Related proteins expression </b>. Also, activation of a Pathogenesis-Related protein called PR1 in grapevine is regulated by the <b> salicylic acid signaling pathway </b>. The lack of PR1 expression in non-sulfated Curdlan-treated grapevine could be explained by a negative feedback of glucan. This is demonstrated by the study of a double mutant of pmr4 which restore the susceptibility to mildew. It suggests that linear β- | + | <p align="justify"style="text-indent: 3vw;"> Furthermore, non-sulfated Curdlan doesn't trigger the response through a mutant gene: pmr4. This <b>mutant</b> is resistant to mildew infections but is <b> unable to induce Pathogenesis-Related proteins expression </b>. Also, activation of a Pathogenesis-Related protein called PR1 in grapevine is regulated by the <b> salicylic acid signaling pathway </b>. The lack of PR1 expression in non-sulfated Curdlan-treated grapevine could be explained by a negative feedback of glucan. This is demonstrated by the study of a double mutant of pmr4 which restore the susceptibility to mildew. It suggests that linear (1→3)-β-glucan negatively regulates the salicylic acid pathway. So, <b>sulfation of the glucan would counteract the negative feedback effect. </b> [16]</p> |
<p align="justify" style="text-indent: 3vw;"> To conclude, activation of natural defenses before the invasion of pathogens is a way to improve the resistance of plant against infection and to reduce the use of chemicals products. </p> | <p align="justify" style="text-indent: 3vw;"> To conclude, activation of natural defenses before the invasion of pathogens is a way to improve the resistance of plant against infection and to reduce the use of chemicals products. </p> | ||
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− | <p align="justify" style="text-indent: 3vw;"> In <i> Agrobacterium </i>, <b>three genes (crdA, crdS and crdC) are required for Curdlan production</b>. The putative operon crdASC contains <b>crdS, encoding | + | <p align="justify" style="text-indent: 3vw;"> In <i> Agrobacterium </i>, <b>three genes (crdA, crdS and crdC) are required for Curdlan production</b>. The putative operon crdASC contains <b>crdS, encoding (1→3)-β-glucan synthase catalytic subunit</b>, flanked by two additional genes : crdA and crdC. The first assists translocation of the nascent polymer across the cytoplasmic membrane and the second assists the passage of the nascent polymer across the periplasm. Finally we would like to <b>sulfate</b> our Curdlan molecules chemically in order to <b>enhance it's effects on the activation of the plant's natural defenses</b> since it has been shown that sulfated curdlan is much more effective (see previous page [3]). <b>However</b>, all <b>Curdlan biosynthesis is dependent of nitrogen starvation</b> and various parameters. We want to <b>simplify</b> all of this. </p> |
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<img style= "width:40vw; height:15vw;"src="https://static.igem.org/mediawiki/2015/a/ad/Bordeaux_biosyntheseV2.png"> | <img style= "width:40vw; height:15vw;"src="https://static.igem.org/mediawiki/2015/a/ad/Bordeaux_biosyntheseV2.png"> | ||
− | <p class="reference" align ="center"> <b> Figure 2: Schematic representation of the β | + | <p class="reference" align ="center"> <b> Figure 2: Schematic representation of the (1→3)-β-glucan synthetic pathway [2] </b> </p> |
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− | <p align="justify" style="text-indent: 3vw;"> Before starting the project, we took a few weeks to decide <b>which host organism we would use</b> and how they could be useful. To begin with we looked at three different organisms: <i> Escherichia coli </i>, <i> Bacillus subtilis </i> and <i> Saccharomyces cerevisiae </i> and compared their β-glucan metabolic pathways. We rapidly eliminated <i> Bacillus subtilis </i> from our possible hosts due to it's lack of enzymes involved in the metabolic pathway of β- | + | <p align="justify" style="text-indent: 3vw;"> Before starting the project, we took a few weeks to decide <b>which host organism we would use</b> and how they could be useful. To begin with we looked at three different organisms: <i> Escherichia coli </i>, <i> Bacillus subtilis </i> and <i> Saccharomyces cerevisiae </i> and compared their β-glucan metabolic pathways. We rapidly eliminated <i> Bacillus subtilis </i> from our possible hosts due to it's lack of enzymes involved in the metabolic pathway of (1→3)-β-glucans (Figure 5). However, we found that <b><i>Saccharomyces cerevisiae</i> naturally produces Curdlan</b> in it's cell wall, like <i>Agrobacterium</i>. Furthermore, <b><i> Escherichia coli </i> is only missing one enzyme</b> (the <b>β-Glucan synthase</b>) to synthethize Curdlan. We therefore concluded that we could keep these two organisms: one where we would overexpress the (1→3)-β-glucan synthase using a constititive promoter and one where we would insert the ability to create curdlan by adding the enzyme that is needed throught the crdASC putative operon.</p> |
<p class="reference" align="left"> <b>Literature Cited: </b> </p> | <p class="reference" align="left"> <b>Literature Cited: </b> </p> | ||
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<p align="justify" style="text-indent: 3vw;"> Firstly, we decided to produce Curdlan with <b><i> Escherichia coli </i></b>, because <i> Agrobacterium tumefasciens</i> and it are Gram negative bacteria and have a lot of <b>membrane similarity</b>. Moreover <i> Escherichia coli </i> is a simple bacteria that can be <b>grown and cultured easily and inexpensively</b> in a laboratory unlike <i> Agrobacterium </i>. The Curdlan production in <i> Agrobacterium </i> requires Nitrogen Starvation and it's growth parameters need to be relatively precise. this is not the case with <i> E. coli </i> in our project. </p> | <p align="justify" style="text-indent: 3vw;"> Firstly, we decided to produce Curdlan with <b><i> Escherichia coli </i></b>, because <i> Agrobacterium tumefasciens</i> and it are Gram negative bacteria and have a lot of <b>membrane similarity</b>. Moreover <i> Escherichia coli </i> is a simple bacteria that can be <b>grown and cultured easily and inexpensively</b> in a laboratory unlike <i> Agrobacterium </i>. The Curdlan production in <i> Agrobacterium </i> requires Nitrogen Starvation and it's growth parameters need to be relatively precise. this is not the case with <i> E. coli </i> in our project. </p> | ||
− | <p align="justify" style="text-indent: 3vw;"> Since <i> E. coli </i> naturally produces UDP Glucose (metabolite number 3 on Figure 5), adding the β- | + | <p align="justify" style="text-indent: 3vw;"> Since <i> E. coli </i> naturally produces UDP Glucose (metabolite number 3 on Figure 5), adding the (1→3)-β-glucan synthase would theoretically allow Curdlan production. We therefore inserted the three genes which code for the β-glucan synthase and metabolic transporters in <i> Agrobacterium </i> (crdASC) into <i> E. coli </i>. However, since our gene sequences for crdA, crdS, and crdC originally come from <i> Agrobacterium </i> we decided to <b>optimize our gene codons</b> for <i> E. coli </i> with IDT's codon optimization tool in order to make sure that our gene would correctly be expressed. Furthermore we decided to place the genes under an easier control than N-starvation by using a <b>promoter</b> which is <b>activated in stationary phase</b>. (osmY, <a href= "http://parts.igem.org/Part:BBa_J45992" style=" color: #8b008b;"> BBa_J45992 </a> characterized by MIT in 2006). This should theoretically allow maximum production in simple conditions. </p> |
<img style= "width:30vw; height:8vw; align:center;" src= "https://static.igem.org/mediawiki/2015/7/79/Bordeaux_Biobrick.jpg"> | <img style= "width:30vw; height:8vw; align:center;" src= "https://static.igem.org/mediawiki/2015/7/79/Bordeaux_Biobrick.jpg"> | ||
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<h5> Using Yeast: <br> <i> Saccharomyces cerevisiae </i> </h5> | <h5> Using Yeast: <br> <i> Saccharomyces cerevisiae </i> </h5> | ||
− | <p align="justify" style="text-indent: 3vw;"> Yeast cell walls are naturally made up of various layers which are represented in the following diagram. First there is a layer of chitin, then a layer of β-glucans and finally a mixed layer of proteins and mannan. Commonly, the yeast cell wall is made of 5-10% of β- | + | <p align="justify" style="text-indent: 3vw;"> Yeast cell walls are naturally made up of various layers which are represented in the following diagram. First there is a layer of chitin, then a layer of β-glucans and finally a mixed layer of proteins and mannan. Commonly, the yeast cell wall is made of 5-10% of (1→6)-β-glucans and 50-55% of a <b>mix of (1→3)-β-glucans and (1→3)-β-glucans.</b> </p> |
<img style= "width:38vw; height:15vw;" src="https://static.igem.org/mediawiki/2015/thumb/f/f8/Bordeaux_yeast_wall.png/800px-Bordeaux_yeast_wall.png" > | <img style= "width:38vw; height:15vw;" src="https://static.igem.org/mediawiki/2015/thumb/f/f8/Bordeaux_yeast_wall.png/800px-Bordeaux_yeast_wall.png" > | ||
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− | <p align="justify" style="text-indent: 3vw;"> Since the layer of mannan and proteins as well as chitin is insoluble in alkali solutions, beta glucans are easily separated from the rest of the yeast cell wall. Therefore, the only alkali soluble components are a mix of β- | + | <p align="justify" style="text-indent: 3vw;"> Since the layer of mannan and proteins as well as chitin is insoluble in alkali solutions, beta glucans are easily separated from the rest of the yeast cell wall. Therefore, the only alkali soluble components are a mix of (1→6)-β-glucans(1→3)-β-D-glucans. (aimanianda et al 2009) In order to separate the two we plan on using <b>(1→6)-β-glucanases</b> in order to obtain a solution of (1→3)-β-glucans and therefore our Curdlan molecule. </p> |
<p align="justify" style="text-indent: 3vw;"> We therefore decided to over-express the Curdlan metabolic pathway by inserting into yeast (<i>INVSC1</i> strain ) an inducible promoter (<i>Gal1</i>) for the β-glucan synthase gene (<i>Fks1</i>) hoping that this would allow the cell to produce curdlan in greater quantities. This would allow us to compare our Curdlan production in E. coli to the natural production in an organism and the enhanced production through the addition of a promoter. </p> | <p align="justify" style="text-indent: 3vw;"> We therefore decided to over-express the Curdlan metabolic pathway by inserting into yeast (<i>INVSC1</i> strain ) an inducible promoter (<i>Gal1</i>) for the β-glucan synthase gene (<i>Fks1</i>) hoping that this would allow the cell to produce curdlan in greater quantities. This would allow us to compare our Curdlan production in E. coli to the natural production in an organism and the enhanced production through the addition of a promoter. </p> |
Revision as of 08:06, 18 September 2015