Difference between revisions of "Team:NUDT CHINA/Safety"

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{{NUDT_CHINA}}
 
 
<html>
 
<html>
<h2>Safety in iGEM</h2>
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<script type="text/javascript">
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background-color: #f3f3f3;
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background-image: url(https://static.igem.org/mediawiki/2015/8/8a/Team_NUDT_CHINA_Soft_wallpaper.png);
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<style type="text/css">
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<!--BANNER CONTAINER-->
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<style type="text/css">
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margin-left:180px;
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margin-right:180px;
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<!--MENU-->
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<style type="text/css">
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#menu img
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#menu ul
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{
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list-style-type:none;
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padding: 0;
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border: 0;
  
<p>Please visit <a href="https://2015.igem.org/Safety">the main Safety page</a> to find this year's safety requirements & deadlines, and to learn about safe & responsible research in iGEM.</p>
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#navigation span
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{
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padding-left: 10px;
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padding-right: 10px;
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}
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</style>
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<!--IGEM LOGO-->
 +
<style type="text/css">
 +
#logoContainer {
 +
position: fixed;
 +
top: 30px;
 +
right: 30px;
 +
}
 +
</style>
 +
<!--NUDT_Container-->
 +
<style type="text/css">
 +
#NUDT_Container
 +
{
 +
clear: both;
 +
width: auto;
 +
margin: 30px 180px;
 +
padding: 0px 0px;
 +
font-family: 'verdana',sans-serif;
 +
background: #fff;
 +
box-shadow: 0 3px 8px rgba(0,0,0,.1);
 +
position: relative;
 +
}
 +
#NUDT_Container table{
 +
position: center;
 +
border: 10px;
 +
}
 +
#NUDT_Container td{
 +
text-align: center;
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}
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#NUDT_Container ul
 +
{
 +
list-style-position:inside;
 +
padding: 10px 50px;
 +
border: 0;
  
<p>On this page of your wiki, you should write about how you are addressing any safety issues in your project. The wiki is a place where you can <strong>go beyond the questions on the safety forms</strong>, and write about whatever safety topics are most interesting in your project. (You do not need to copy your safety forms onto this wiki page.)</p>
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}
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#NUDT_Container li
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{
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padding: 0;
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border: 0;
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}
  
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#NUDT_Container p{
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text-decoration: none;
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font-family: "Trebuchet MS", Helvetica, sans-serif;
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color: #888887;
 +
position: relative;
 +
padding: 10px 50px;
 +
font-size: 16px;
 +
}
 +
#NUDT_Container a {
 +
position: relative;
 +
    text-decoration:none;
 +
    color:#d82545;
 +
}
  
<h4>Safe Project Design</h4>
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#NUDT_Container a:hover
 +
{
 +
text-decoration:underline;
 +
}
 +
#NUDT_Container h1, h2, h3, h4, h5{
 +
color: #444;
 +
margin: 20px 0px;
 +
padding:4px 8px;
 +
letter-spacing: -1px;
 +
position: relative;
 +
}
 +
#NUDT_Container h1 {
 +
font:bold 28px/12px 'verdana',sans-serif;
 +
border-left: 10px solid #444;
 +
line-height:28px;
 +
}
 +
#NUDT_Container h2 {
 +
font:bold 20px/6px 'verdana',sans-serif;
 +
border-left: 30px solid #444;
 +
line-height:20px;
 +
}
 +
#NUDT_Container h3 {
 +
font:bold 16px/4px 'verdana',sans-serif;
 +
padding-left: 50px;
 +
line-height:16px;
 +
}
 +
/*CASE*/
 +
#NUDT_Container ca {
 +
position: relative;
 +
display: inline-block;
 +
margin: 10px 100px;
 +
    padding: 10px 20px;
 +
    text-decoration: none;
 +
background-color: #bcbcbc;
 +
color: #000000;
 +
border-radius: 8px 8px;
 +
outline: none;
 +
cursor: pointer;
 +
font-family: "Trebuchet MS", Helvetica, sans-serif;
 +
font-size: 16px;
 +
}
 +
#NUDT_Container team {
 +
position: relative;
 +
display: inline-block;
 +
width: auto;
 +
height: auto;
 +
margin: 10px 50px;
 +
    padding: 20px 20px;
 +
    text-decoration: none;
 +
color: #000000;
 +
border-radius: 8px 8px;
 +
outline: none;
 +
cursor: pointer;
 +
font-family: "Trebuchet MS", Helvetica, sans-serif;
 +
font-size: 16px;
 +
}
  
<p>Does your project include any safety features? Have you made certain decisions about the design to reduce risks? Write about them here! For example:</p>
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</style>
 +
<!--DIA_Container-->
 +
<style type="text/css">
 +
#NUDT_Dia_Container
 +
{
 +
width: auto;
 +
margin: 0px 100px;
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}
 +
</style>
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<!--BLANK_Container-->
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<style type="text/css">
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.BLANK_Container
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{
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width: auto;
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}
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</style>
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<!--TEAM-->
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<style type="text/css">
 +
.team_Container
 +
{
 +
margin: 20px 10px;
 +
padding: 20px 10px;
 +
width: auto;
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}
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</style>
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<!--NUDT_Footer-->
 +
<style type="text/css">
 +
#NUDT_Footer
 +
{
 +
clear: both;
 +
width: auto;
 +
padding: 30px 0px;
 +
font-family: 'verdana',sans-serif;
 +
position: relative;
 +
}
 +
#NUDT_Footer p{
 +
text-decoration: none;
 +
font-family: "Trebuchet MS", Helvetica, sans-serif;
 +
color: #000000;
 +
position: relative;
 +
padding: 10px 50px;
 +
font-size: 16px;
 +
}
 +
</style>
 +
<!--Common-->
 +
<div id = "myMainContainer">
 +
<div id = "menu">
 +
<img src="https://static.igem.org/mediawiki/2015/9/99/Menu.png"/>
 +
<li><a id = "HOME" href="https://2015.igem.org/Team:NUDT_CHINA"><span>HOME</span></a></li>
 +
<li><a id = "TEAM" href="https://2015.igem.org/Team:NUDT_CHINA/Team"><span>TEAM</span></a></li>
 +
 +
<li><a id = "PROJECT" href = "#"><span>PROJECT</span></a></li>
 +
<li><a id = "Description" href = "https://2015.igem.org/Team:NUDT_CHINA/Description" class = "b"><span>Description</span></a></li>
 +
<li><a id = "Experiments" href = "https://2015.igem.org/Team:NUDT_CHINA/Experiments" class = "b"><span>Experiments &amp; Protocols</span></a></li>
 +
<li><a id = "Results" href="https://2015.igem.org/Team:NUDT_CHINA/Results"  class = "b"><span>Results</span></a></li>
 +
<li><a id = "Design" href="https://2015.igem.org/Team:NUDT_CHINA/Design" class = "b"><span>Design</span></a></li>
 +
 +
<li><a id = "PARTS" href = "#"><span>PARTS</span></a></li>
 +
<li><a id = "Team" href = "https://2015.igem.org/Team:NUDT_CHINA/Parts" class = "b"><span>Team Parts</span></a></li>
 +
<li><a id = "Basic" href = "https://2015.igem.org/Team:NUDT_CHINA/Basic_Part" class = "b"><span>Basic Parts</span></a></li>
 +
<li><a id = "Composite" href="https://2015.igem.org/Team:NUDT_CHINA/Composite_Part"  class = "b"><span>Composite Parts</span></a></li>
  
<ul>
 
<li>Choosing a non-pathogenic chassis</li>
 
<li>Choosing parts that will not harm humans / animals / plants</li>
 
<li>Substituting safer materials for dangerous materials in a proof-of-concept experiment</li>
 
<li>Including an "induced lethality" or "kill-switch" device</li>
 
</ul>
 
  
<h4>Safe Lab Work</h4>
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<li><a id = "NOTEBOOK" href="https://2015.igem.org/Team:NUDT_CHINA/Notebook"><span>NOTEBOOK</span></a></li>
 
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<li><a id = "ATTRIBUTIONS" href="https://2015.igem.org/Team:NUDT_CHINA/Attributions"><span>ATTRIBUTIONS</span></a></li> 
<p>What safety procedures do you use every day in the lab? Did you perform any unusual experiments, or face any unusual safety issues? Write about them here!</p>
+
<li><a id = "COLLABORATIONS" href="https://2015.igem.org/Team:NUDT_CHINA/Collaborations"><span>COLLABORATIONS</span></a></li>
 +
<li><a id = "HUMAN" href="https://2015.igem.org/Team:NUDT_CHINA/Practices"><span>HUMAN PRACTICES</span></a></li> 
 +
<li><a id = "SAFETY" href="https://2015.igem.org/Team:NUDT_CHINA/Safety"><span>SAFETY</span></a></li>
 +
<li><a id = "MODELING" href="https://2015.igem.org/Team:NUDT_CHINA/Modeling"><span>MODELING</span></a></li> 
 +
    </div>
 +
    <div id = "logoContainer">
 +
    <a href="https://igem.org/Main_Page"><img  id = "iGEM_LOGO" src="https://static.igem.org/mediawiki/2015/e/ec/TEAM_NUDT_CHINA_iGEM_Logo.png" style="width: 130px; height:135px"/></a>
 +
    </div>
 +
<link href="https://2015.igem.org/Team:NEFU_China/cleariGEM?action=raw&ctype=text/css" rel="stylesheet" /> </head>
 +
</html>
 +
<html>
 +
<!--Main Container-->
 +
<div id = "NUDT_Container" class = "clearStyle">
 +
<!--subCommon-->
 +
<div>
 +
<img src="https://static.igem.org/mediawiki/2015/0/06/Team_NUDT_CHINA_banner.jpg" style = "width: 100%; height: auto"/>
 +
</div>
 +
<h1>SAFETY</h1>
 +
<table>
 +
<tr>
 +
<p style = "font-size: 12px; text-align: left; padding: 0px 50px 0px 100px;">TIPS1: The left <B style = "color: #d82545">MENU :)</B> links to other NUDT_CHINA website.</p>
 +
<p style = "font-size: 12px; text-align: left; padding: 0px 50px 0px 100px;">TIPS2: The right <B style = "color: #d82545">NAVIGATE :)</B> posites on content in this page. (Valid when <B style = "color: #d82545">UNFOLDED</B>)</p>
 +
<p style = "font-size: 12px; text-align: left; padding: 0px 50px 0px 100px;">TIPS3: Click <B style = "color: #d82545">SUBTITLE</B> to <B style = "color: #d82545">FOLD/UNFOLD</B> related content. </p>
 +
</tr>
 +
<tr><button id = "slideAll" style = "margin: 0px 50px 0px 100px;"> CLICK TO FOLD/UNFOLD ALL</button>
 +
</tr>
 +
</table>
  
<h4>Safe Shipment</h4>
+
<script type="text/javascript">
 +
$(document).ready(function(){
 +
$("#slideAll").click(function(){
 +
$(".BLANK_Container").slideToggle(300);
 +
});
 +
});
 +
</script>
 +
<!--Collaboration with NJU_CHINA-->
 +
<h2 id = "pos1">I.Researcher Safety<B style = "color: #d82545">(CLICK)</B></h2>
 +
<div class = "BLANK_Container" id = "slide1">
 +
<p>1. Before we start our experiments, our advisors gave us a wonderful lesson about Lab safety. And our advisors often come to our lab to check in the whole process of the experiment, therefore we can get instructions on time.</p>
 +
<p>2. As for electrical safety, the electrical engineer of the lab showed us the circuit layout and told us details about the use of these equipments. When finish the whole experiment that day, we take turns to check these electric appliances. Before using every kind of equipment, we read the instructions over and over again to avoid any safety problems, and we cut off the power immediately when do not use them. Particularly for using centrifugal machine, it is significant to make sure that you have already balanced it and covered the lid well before centrifugation.</p>
 +
<p>3. We are enforced to wear gloves, masks and lab coat once we enter our lab. Because EtBr is considered to be a kind of mutagenic material, we choose GEL-RED as substitutes. However, as it is a kind of nucleic acid dye, we separate a special area for the preparation of agarose gel and agarose gel electrophoresis. In this area, we need to wear two pair of gloves to touch anything.</p>
 +
<p>4. We only use few kinds of toxic chemical reagents( such as glacial acetic acid) and we put them in the fume cupboard, any relevant operations are all done in the fume cupboard.</p>
 +
<p>5. We use DH5αand BL21(<i>E.coli</i>) which are proved to be safe for human</p>
 +
<p>6. As our lab is a new building where the concentration of formaldehyde is very high and it is harmful to our body, we buy lots of activated carbon masks to avoid breathing in too much formaldehyde. What’s more, we buy bags of activated carbon and put them in various places. And the electric fan and air-condition was always working for those days.</p>
 +
<p>7. Everybody has to sterilize his/her hands and all the equipment platforms with alcohol solution (70%) before and after each experiment.</p>
 +
<script type="text/javascript">
 +
$(document).ready(function(){
 +
$("#pos1").click(function(){
 +
$("#slide1").slideToggle(300);
 +
});
 +
});
 +
</script>
 +
</div>
  
<p>Did you face any safety problems in sending your DNA parts to the Registry? How did you solve those problems?</p>
+
<h2 id = "pos2">II.Public Safety<B style = "color: #d82545">(CLICK)</B></h2>
 +
<div class = "BLANK_Container" id = "slide2">
 +
<p>1. It is prohibited to bring anything in the lab out including gloves, masks and lab coat. Therefore each time we get out of the lab, we have to take off lab coat, gloves and wash hands with hand sanitizer.</p>
 +
<p>2. The abandoned bacteria can only be thrown away after high temperature and high pressure sterilization. All collected lab waste are sterilized, packaged and executed.</p>
 +
<p>3. We use DH5αand BL21(Ecoli) which are proved to be safe for human, we ensure that none of the genes or parts that we were assembling would act as virulence factors, and that no known pathogens would be involved in our research. And the production GFP and IAA do no harm to human, too. We work with microorganisms that belong to risk group 1 exclusively.</p>
 +
<script type="text/javascript">
 +
$(document).ready(function(){
 +
$("#pos2").click(function(){
 +
$("#slide2").slideToggle(300);
 +
});
 +
});
 +
</script>
 +
</div>
  
 +
<h2 id = "pos3">III.Environmental Safety<B style = "color: #d82545">(CLICK)</B></h2>
 +
<div class = "BLANK_Container" id = "slide3">
 +
<p>1. All genes were cloned into either pSB1C3 or pSB1A3, both of which are non-conjugative, preventing horizontal transfer of our parts.</p>
 +
<p>2. Our chassis bacteria have not acquired any characteristics that would enable them to compromise human immune system/other systems or evade detection and destruction by the former or facilitate spread between people/animals, which makes them harmless from both a personal and public health point of view.</p>
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<p>3. Our parts are all safe for human, and we use LacI as promoter, which guarantees that our bacteria won’t produce large amounts of protein if not induce the expression. On the other hand, our production are GFP (Green Fluorescent Protein) and IAA (Indole-3-acetic acid) , both of which do no harm to our environment. What’s more, the expression level of these two production are both very low through our final detection.</p>
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Latest revision as of 20:43, 18 September 2015

SAFETY

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I.Researcher Safety(CLICK)

1. Before we start our experiments, our advisors gave us a wonderful lesson about Lab safety. And our advisors often come to our lab to check in the whole process of the experiment, therefore we can get instructions on time.

2. As for electrical safety, the electrical engineer of the lab showed us the circuit layout and told us details about the use of these equipments. When finish the whole experiment that day, we take turns to check these electric appliances. Before using every kind of equipment, we read the instructions over and over again to avoid any safety problems, and we cut off the power immediately when do not use them. Particularly for using centrifugal machine, it is significant to make sure that you have already balanced it and covered the lid well before centrifugation.

3. We are enforced to wear gloves, masks and lab coat once we enter our lab. Because EtBr is considered to be a kind of mutagenic material, we choose GEL-RED as substitutes. However, as it is a kind of nucleic acid dye, we separate a special area for the preparation of agarose gel and agarose gel electrophoresis. In this area, we need to wear two pair of gloves to touch anything.

4. We only use few kinds of toxic chemical reagents( such as glacial acetic acid) and we put them in the fume cupboard, any relevant operations are all done in the fume cupboard.

5. We use DH5αand BL21(E.coli) which are proved to be safe for human

6. As our lab is a new building where the concentration of formaldehyde is very high and it is harmful to our body, we buy lots of activated carbon masks to avoid breathing in too much formaldehyde. What’s more, we buy bags of activated carbon and put them in various places. And the electric fan and air-condition was always working for those days.

7. Everybody has to sterilize his/her hands and all the equipment platforms with alcohol solution (70%) before and after each experiment.

II.Public Safety(CLICK)

1. It is prohibited to bring anything in the lab out including gloves, masks and lab coat. Therefore each time we get out of the lab, we have to take off lab coat, gloves and wash hands with hand sanitizer.

2. The abandoned bacteria can only be thrown away after high temperature and high pressure sterilization. All collected lab waste are sterilized, packaged and executed.

3. We use DH5αand BL21(Ecoli) which are proved to be safe for human, we ensure that none of the genes or parts that we were assembling would act as virulence factors, and that no known pathogens would be involved in our research. And the production GFP and IAA do no harm to human, too. We work with microorganisms that belong to risk group 1 exclusively.

III.Environmental Safety(CLICK)

1. All genes were cloned into either pSB1C3 or pSB1A3, both of which are non-conjugative, preventing horizontal transfer of our parts.

2. Our chassis bacteria have not acquired any characteristics that would enable them to compromise human immune system/other systems or evade detection and destruction by the former or facilitate spread between people/animals, which makes them harmless from both a personal and public health point of view.

3. Our parts are all safe for human, and we use LacI as promoter, which guarantees that our bacteria won’t produce large amounts of protein if not induce the expression. On the other hand, our production are GFP (Green Fluorescent Protein) and IAA (Indole-3-acetic acid) , both of which do no harm to our environment. What’s more, the expression level of these two production are both very low through our final detection.