Difference between revisions of "Team:Berlin/Project/Implementation"

 
Line 151: Line 151:
 
    
 
    
 
The Enzymatic Flagellulose unit will be integrated within the secondary wastewater treatment  
 
The Enzymatic Flagellulose unit will be integrated within the secondary wastewater treatment  
phase, where biological oxidation takes place. While we intend it to be immobilized it on a rotor  
+
phase, where biological oxidation takes place. While we intend it to be immobilize it on a rotor  
inside the tanks, another idea might be to use beads and have them flow through the sewage  
+
inside the tanks, another idea is to use beads and have them flow through the sewage  
 
water in the tank. For this decision to be made, we would have to test what geometry has higher  
 
water in the tank. For this decision to be made, we would have to test what geometry has higher  
 
efficiencies regarding the degradation of microplastics. That way, the release of microplastics  
 
efficiencies regarding the degradation of microplastics. That way, the release of microplastics  
 
into the environment, its distribution, and related environmental consequences can be prevented.
 
into the environment, its distribution, and related environmental consequences can be prevented.
Furthermore, our functionalized matrix can be expanded to other environmental problematic
+
Furthermore, our functionalized matrix can be expanded to other environmental problems, such as  
issues, such as removing medicine residues or pesticides from wastewater. Also, after having  
+
removing medicine residues or pesticides from wastewater. Also, after having developed this modular  
developed this modular machine, it could be applied directly where wastewater enters the system  
+
machine, it could be applied directly where wastewater enters the system  
 
– meaning in the drain of a home or an industrial facility. For example, we could use it like a  
 
– meaning in the drain of a home or an industrial facility. For example, we could use it like a  
sink strainer by making the Enzymatic Flagellulose home compatible. The main reason we began
+
sink strainer by making the Enzymatic Flagellulose domestically compatible. The main reason why we  
with applying our Enzymatic Flagellulose in the wastewater treatment plants is that the enzymes  
+
chose to start applying our idea of Enzymatic Flagellulose in the wastewater treatment plants is  
need some time to carry out the reactions. While there is not enough time if the water just flows  
+
that the enzymes need some time to carry out the reactions. While there is not enough time if the  
through the sink, in the treatment plants it will stay for several hours in one tank (see below).  
+
water just flows through the sink, in the treatment plants it will stay for several hours in one  
Later, when we have optimized the enzymes to carry out very fast reactions, the implementation
+
tank (see below). Later, when we have optimized the enzymes to carry out very fast reactions, the  
of a microplastics degrading sink strainer is the next application of choice.
+
implementation of a microplastics degrading sink strainer will be the next application of choice.
 
Thus, our modular machine offers a wide range of application possibilities. By varying and  
 
Thus, our modular machine offers a wide range of application possibilities. By varying and  
 
combining the interlinked enzymes of different functions, it can be applied diversely and  
 
combining the interlinked enzymes of different functions, it can be applied diversely and  
Line 173: Line 173:
 
<strong><h5>4.1 Collaboration TU Delft</h5></strong>
 
<strong><h5>4.1 Collaboration TU Delft</h5></strong>
 
Essay of how to integrate the project of iGEM Berlin and iGEM Delft<br/><br/>
 
Essay of how to integrate the project of iGEM Berlin and iGEM Delft<br/><br/>
The iGEM team of Berlin uses synthetic biology to develop a molecular filtering machine. This  
+
The iGEM team of Berlin uses Synthetic Biology to develop a molecular filtering machine. This  
 
project has great opportunities in solving the problems with microplastics finding their ways into  
 
project has great opportunities in solving the problems with microplastics finding their ways into  
 
the wastewater treatment plant. During the wastewater treatment, the microplastics are not  
 
the wastewater treatment plant. During the wastewater treatment, the microplastics are not  
 
removed sufficiently. The ‘escaped’ microplastics are taken up by organisms living in rivers,  
 
removed sufficiently. The ‘escaped’ microplastics are taken up by organisms living in rivers,  
 
lakes and the oceans, but also by human beings through the food chain. To date, no scalable  
 
lakes and the oceans, but also by human beings through the food chain. To date, no scalable  
approaches has been found to solve this problem.<br/><br/>
+
approaches have been found to solve this problem.<br/><br/>
  
 
Luckily, the iGEM team of Berlin has the solution for the problem with microplastics; a  
 
Luckily, the iGEM team of Berlin has the solution for the problem with microplastics; a  
Line 187: Line 187:
 
surface with highly catalytic activity.<br/><br/>
 
surface with highly catalytic activity.<br/><br/>
  
Not only Berlin see the opportunities of this project, also the iGEM team of the TU Delft. This  
+
Not only Berlin see the opportunities of this project, also the iGEM team of TU Delft. This  
 
teams is working with E. coli bacteria that can form nanowires at an induced moment. These  
 
teams is working with E. coli bacteria that can form nanowires at an induced moment. These  
nanowires will link the bacteria to each other provide a stable structure. With a 3D printer, layers  
+
nanowires will link the bacteria to each other providing a stable structure. With a 3D printer, layers  
 
of bacteria can be formed in a predesigned way. Another advantage of this technique is that the  
 
of bacteria can be formed in a predesigned way. Another advantage of this technique is that the  
enzymes produced by the bacteria can covalent bind to the nanowires (Botyanszki, Tay et al.  
+
enzymes produced by the bacteria can covalently bind to the nanowires (Botyanszki, Tay et al.  
 
2015). In this case, the scaffold of cellulose is not required anymore. [MP1] Moreover, the printer  
 
2015). In this case, the scaffold of cellulose is not required anymore. [MP1] Moreover, the printer  
 
and nanowires generate a highly flexible machine, since every cell type and every enzyme could  
 
and nanowires generate a highly flexible machine, since every cell type and every enzyme could  

Latest revision as of 21:10, 18 September 2015

4. Implementation of our Product

The Enzymatic Flagellulose unit will be integrated within the secondary wastewater treatment phase, where biological oxidation takes place. While we intend it to be immobilize it on a rotor inside the tanks, another idea is to use beads and have them flow through the sewage water in the tank. For this decision to be made, we would have to test what geometry has higher efficiencies regarding the degradation of microplastics. That way, the release of microplastics into the environment, its distribution, and related environmental consequences can be prevented. Furthermore, our functionalized matrix can be expanded to other environmental problems, such as removing medicine residues or pesticides from wastewater. Also, after having developed this modular machine, it could be applied directly where wastewater enters the system – meaning in the drain of a home or an industrial facility. For example, we could use it like a sink strainer by making the Enzymatic Flagellulose domestically compatible. The main reason why we chose to start applying our idea of Enzymatic Flagellulose in the wastewater treatment plants is that the enzymes need some time to carry out the reactions. While there is not enough time if the water just flows through the sink, in the treatment plants it will stay for several hours in one tank (see below). Later, when we have optimized the enzymes to carry out very fast reactions, the implementation of a microplastics degrading sink strainer will be the next application of choice. Thus, our modular machine offers a wide range of application possibilities. By varying and combining the interlinked enzymes of different functions, it can be applied diversely and simultaneously for various purposes.

4.1 Collaboration TU Delft
Essay of how to integrate the project of iGEM Berlin and iGEM Delft

The iGEM team of Berlin uses Synthetic Biology to develop a molecular filtering machine. This project has great opportunities in solving the problems with microplastics finding their ways into the wastewater treatment plant. During the wastewater treatment, the microplastics are not removed sufficiently. The ‘escaped’ microplastics are taken up by organisms living in rivers, lakes and the oceans, but also by human beings through the food chain. To date, no scalable approaches have been found to solve this problem.

Luckily, the iGEM team of Berlin has the solution for the problem with microplastics; a molecular filtering machine. Their proposed filter consists of a surface made up of cellulose to which bacterial flagella will be immobilized. The attachment required for this will be achieved via a cellulose binding domain. The single flagella-subunits, also known as flagellin, will be interlinked with plastic-degrading enzymes. Thus, this system enables an increased specific surface with highly catalytic activity.

Not only Berlin see the opportunities of this project, also the iGEM team of TU Delft. This teams is working with E. coli bacteria that can form nanowires at an induced moment. These nanowires will link the bacteria to each other providing a stable structure. With a 3D printer, layers of bacteria can be formed in a predesigned way. Another advantage of this technique is that the enzymes produced by the bacteria can covalently bind to the nanowires (Botyanszki, Tay et al. 2015). In this case, the scaffold of cellulose is not required anymore. [MP1] Moreover, the printer and nanowires generate a highly flexible machine, since every cell type and every enzyme could potentially be produced. One of the requirements posed by Berlin’s team is that the filter is highly flexible in use, so that it can be used for different types of water. So, by combining these technologies, the filtering machine proposed by Berlin’s iGEM team becomes even more attractive.

Reference:
Botyanszki, Z., P. K. Tay, P. Q. Nguyen, M. G. Nussbaumer and N. S. Joshi (2015). "Engineered catalytic biofilms: Site-specific enzyme immobilization onto E. coli curli nanofibers." Biotechnol Bioeng 112(10): 2016-2024.