Difference between revisions of "Team:SJTU-Software/Design"
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Latest revision as of 22:21, 18 September 2015
Our software ‘Base’ have four based functions:
Search,Construct,Evaluate and Upload.
This document will use some specific examples
to help you learn how to use our software.
Search for device:
When you want you use our software to search for a device,you may follow such steps:
Here is the search box in search page:
![](https://static.igem.org/mediawiki/2015/d/d4/SJTU-SOFTWARE.demo1.png)
First,enter the keyword, like “protein”
Then click button ‘Device’
Button ‘Advanced’ is used to change weight,click it and you will see this page:
![](https://static.igem.org/mediawiki/2015/3/32/SJTU-SOFTWARE.demo2.png)
Change weight as you like,
For example:
Set Uses to 1
Set Part Results to 20
Set Confirmed_times to 1
Set Number_comments to 1
![](https://static.igem.org/mediawiki/2015/c/c1/SJTU-SOFTWARE.demo3.png)
Leave the rest as the defaults and click button ‘Sure’.
You will see result like this:
![](https://static.igem.org/mediawiki/2015/4/49/SJTU-SOFTWARE.demo4.png)
Search for Part:
Searching for part is a similar process
For example,
We enter keyword ”DNA”,click button ‘Part’ and change weight the same as the example of searching for device above
(Set Uses to 1;set Part Results to 20;set Confirmed_times to 1;set Number_comments to 1).
Then you will see the result as below:
![](https://static.igem.org/mediawiki/2015/2/2d/SJTU-SOFTWARE.demo5.png)
Construct:
Construct page can help you design a new device intelligently.
Let us see a simple example:
Drag the icons from the left of the page and construct a simple device with a regulator,coding area,a reporter and a terminator.
Now you will see your device in graphical form:
![](https://static.igem.org/mediawiki/2015/2/2b/SJTU-SOFTWARE.demo6.png)
Click button ‘Advise’ and select biobricks for your device.You can fill in functions if you want.
History id will show all ID of biobricks in your device.
![](https://static.igem.org/mediawiki/2015/1/12/SJTU-SOFTWARE.demo7.png)
When you have finished a device, you can click "Next-Evaluate" button on the bottom right corner to evaluate this device.
Evaluate:
This page can help you evaluate a device,this device can be a existing device or a brand new device you have just designed.
Continuing with the example of ‘Construct’.When you have clicked button ‘Next-Evaluate’,you will jump to Evaluate page like this:
![](https://static.igem.org/mediawiki/2015/f/f4/SJTU-SOFTWARE.demo9.png)
You can delete any of these biobricks or insert new biobricks to change this device.
Of course,you can delete all and refill ID to start the evaluation of a new device.
Choose Accuracy on the top left of the page,then click "Evaluate"to start the evaluation.
After a short wait,you may get results as below:
![](https://static.igem.org/mediawiki/2015/c/cf/SJTU-SOFTWARE.demo10.png)
Here you can see overall score of the device and ‘Optimal ID’.
‘Optimal ID’ is a list of biobricks recommended to replace original biobrick,you may choose biobricks from them to optimize this device.
![](https://static.igem.org/mediawiki/2015/d/db/SJTU-SOFTWARE.demo11.png)
Do not forget use button ‘Upload’ if you want to upload this device to our database.
Upload page is very easy to use,
Continuing with our example,
![](https://static.igem.org/mediawiki/2015/c/c5/SJTU-SOFTWARE.demo12.png)
If you want to upload a new biobrick to our database,just fill in all necessary information and click button ‘Submit’.
When you see
![](https://static.igem.org/mediawiki/2015/6/60/SJTU-SOFTWARE.demo13.png)
That means you have uploaded successfully .