Difference between revisions of "Team:NTNU Trondheim/Software"

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<h2>Software</h2>
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  <h2>Software</h2>
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  <li role="presentation" class="active"><a href="https://2015.igem.org/Team:NTNU_Trondheim/Software">Overview</a></li>
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  <li role="presentation"><a href="https://2015.igem.org/Team:NTNU_Trondheim/Software/iGEM Matchmaker">iGEM Matchmaker</a></li>
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  <li role="presentation"><a href="https://2015.igem.org/Team:NTNU_Trondheim/Software/Quantitative_Analysis_Tool">Quantitative Analysis Tool</a></li>
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  <li role="presentation"><a href="https://2015.igem.org/Team:NTNU_Trondheim/Software/Brixells_Tool">Brixells Modeling Tool</a></li>
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<h4>Note</h4>
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<p>In order to be considered for the <a href="https://2015.igem.org/Judging/Awards#SpecialPrizes">Best Software Tool award</a>, you must fill out this page.</p>
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    <h3 class="panel-title">Software repository</h3>
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    Our software is available on the iGEM <a href="https://github.com/igemsoftware/NTNU-Trondheim-2015">GitHub software repository!</a>
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Two computational tools have been developed in the course of the summer:
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<p>Three computational tools have been developed in the course of the summer:
 
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<li><a href="https://2015.igem.org/Team:NTNU_Trondheim/InterLab_Study/Quantitative_Analysis_Tutorial">Quantitative image analysis tool</a> for high throughput processing of confocal microscopy images.</li>
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<li><a href="https://2015.igem.org/Team:NTNU_Trondheim/Software/Quantitative_Analysis_Tool">Quantitative image analysis tool</a> for high throughput processing of confocal microscopy images.</li>
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<li><a href="http://almaaslab.nt.ntnu.no/igem_matchmaker/">iGEM Matchmaker</a>, updated from the one originally developed by the NTNU 2012 team with automatic team matching using keyword extraction.<li>
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<li><a href="http://almaaslab.nt.ntnu.no/igem_matchmaker/">iGEM Matchmaker</a>, updated from the one originally developed by the NTNU 2012 team with automatic team matching using keyword extraction.</li>
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<li><a href="https://2015.igem.org/Team:NTNU_Trondheim/Collaborations">Brixells Modeling Tool</a>, created to assist <a href="https://2015.igem.org/Team:Warwick">Team Warwick</a> to predict the probability of bonding of 3D structures built with E. Coli expressing Zinc fingers and DNA strands.
 
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<p>Regardless of the topic, iGEM projects often create or adapt computational tools to move the project forward. Because they are born out of a direct practical need, these software tools (or new computational methods) can be surprisingly useful for other teams. Without necessarily being big or complex, they can make the crucial difference to a project's success. This award tries to find and honour such "nuggets" of computational work.</p>
 
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If you are working on software as your main project, please join the software track. If you are creating software as an addition to your main project, please apply for this award.
 
 
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Here are a few examples from previous teams:
 
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<li><a href="https://2013.igem.org/Team:TU-Munich/Results/Software">TU Munich 2013</a></li>
 
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<li><a href="https://2014.igem.org/Team:Heidelberg/Software">Heidelberg 2014</a></li>
 
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<li><a href="https://2014.igem.org/Team:Aachen/Project/Measurement_Device#Software">Aachen 2014</a></li>
 
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Latest revision as of 22:38, 18 September 2015


Software

Software repository

Our software is available on the iGEM GitHub software repository!

Three computational tools have been developed in the course of the summer:

  1. Quantitative image analysis tool for high throughput processing of confocal microscopy images.
  2. iGEM Matchmaker, updated from the one originally developed by the NTNU 2012 team with automatic team matching using keyword extraction.
  3. Brixells Modeling Tool, created to assist Team Warwick to predict the probability of bonding of 3D structures built with E. Coli expressing Zinc fingers and DNA strands.


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