Difference between revisions of "Team:Westminster/Description"

 
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<h2> Project Description </h2>
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<h3> Project Description </h3>
  
 
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<P>
<I> Shewanella oneidensis </I> MR-1 is an important microorganism in bioremediation due to its diverse respiratory capabilities. It is a dissmilatory metal reducing bacterium. Being facultative organism, it has the ability to adapt the both aerobic and anaerobic environments as well as utilise a number of toxic compounds such as manganese and uranium. It does this by accepting electrons, which enables Shewanella oneidensis to have the potential to produce electricity. It is a specific pathway, known as the <I> Mtr </I> pathway which is involved in the accepting of electrons which then carries a potential electrical charge.
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<i>Shewanella oneidensis</i> MR-1 is an important microorganism in bioremediation due to its diverse respiratory capabilities. It is a dissmilatory metal reducing bacterium. Being facultative organism, it has the ability to adapt to both aerobic and anaerobic environments, as well as utilise a number of toxic compounds such as manganese and uranium. It does this by accepting electrons, which gives <i>Shewanella oneidensis</i> the potential of producing electricity. An electron transfer pathway, known as the <i>Mtr</i> pathway, facilitates the extracellular translocation of electrons that are gained during the reduction of a carbon source. <br><br>
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The Mtr pathway consists of the following five genes-
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OmcA- an outer membrane decahaeme cytochrome c
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MtrC- an outer membrane decahaeme cytochrome c
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MtrA- a periplasmic dechaeme cytochrome c
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Mtr B- a transmembrane porin which stabilises interaction between Mtr A and C
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CymA-an inner membrane tetrahaeme cytochrome c (Figure 1). 
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2015 Westminster iGEM team have been working on introducing the Mtr pathway into <I> Escherichia coli </I>, in order to produce a microbial fuel cell (MFC) capable of producing electricity. The efficiency of the MFC is down to the biofilm which is formed when cells adhere to a surface and stick to each other, the composition of these biofilms is what determines the amount of electricity produced as it acts like a conductive matrix enabling higher kinetics rates of electron transfer along nanowires.
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By introducing this pathway into <I> E.coli </I>, we hope to increase the transfer of electrons and thus level of electricity produced. <I> Shewanella oneidensis </I> is capable of transferring these electrons through extensions known as nanowires. We are exploring the possibility of electron transfer through the use of flagella found in <I> E.coli </I> species K-12. <I> E.coli </I> will act as an anode, using wastewater as its carbon source. Hence purifying the water in which the cathode will be found.
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This technology has wide reaching global implications such as wastewater treatment to produce electricity and clean water, which could be beneficial to developed and undeveloped countries alike. They could also be used as an electrical source for deep water biosensors within a sediment microbial fuel cell. Furthermore they could play a major role in bioremediation, which is removal of organic pollutants from environments to produce clean water and excess electrical energy.
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The Mtr pathway consists of the following five genes:<br>
  
  
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<li>OmcA - an outer membrane decahaeme cytochrome c</li>
  
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<li>MtrC - an outer membrane decahaeme cytochrome c</li>
  
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<li>MtrA - a periplasmic dechaeme cytochrome c</li>
  
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<li>MtrB - a transmembrane porin which stabilises interaction between MtrA and C </li>
  
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<li>CymA - an inner membrane tetrahaeme cytochrome c (Figure 1). </li>
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<p>
  
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We have been working on introducing the Mtr pathway into <i>Escherichia coli</i>, in order to increase the electrical output in a microbial fuel cell (MFC). <i>Shewanella oneidensis</i> is capable of transferring these electrons through extensions known as nanowires. However, <i>E.col</i> have a far greater genetic tool set at their disposal, enabling easy genetic manipulation and modification. Further more, they are a very robust microorganism that, when compared to <i>Shewanella oneidensis</i>, are better equipped to deal with changes in a range of environmental variables, e.g. temperature and pH. The carbon source for our modified bacteria will be wastewater.<br><br>
  
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We are exploring the possibility of electron transfer through the use of flagella found in <i>E.coli</i> K-12 derivative, DH5-α. <i>E.coli</i> should act as an anode. Formation of biofilm has also been noted in this strain of <i>E.coli</i>. The efficiency of the MFC is down to the biofilm, which is formed when cells adhere to a surface and stick to each other. The composition of these biofilms is what determines the amount of electricity produced as it acts like a conductive matrix, enabling higher kinetics rates of electron transfer along nanowires. <br><br>
  
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This technology has a multitude of application. It could be used as an electrical source for hard to reach biosensors such as a deep-water biosensors within a sediment microbial fuel cell. Furthermore, MFSc could play a major role in bioremediation, which is removal of organic pollutants from environments to produce clean water and excess electrical energy.<br><br>
  
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<h5>What is Microbial Fuel Cell?</h5>
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MFC (Figure 1) is a device that utilises micro-organisms ability to catalyse an oxidation and reduction reaction at an anode and cathode electrode, respectively, and can produce electricity when connected to a load/resistor via an external circuit, whilst producing water at the cathode. <br><br>
  
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<b>How microbial fuel cell (MFC) works</b><br><br>
  
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In anaerobic conditions, when no oxygen is present the microorganisms produce carbon dioxide, protons and electrons when consuming a carbon source. The architecture of a MFC capitalises on this principal to create electricity. Once the bacteria form a biofilm around the anode, and start to break down organic matter, electrons are striped from the carbon source by an oxidation reaction and translocated out of the cell via an electron transport pathways found only in these specific exoelectrogenic bacteria. These donated electrons are transferred to a carbon electrode (anode) and moved along a wire to a cathode. As electrons move through the wire, they pass through a resistor and an electrical current is generated. At the cathode the electrons reduce atmospheric oxygen to clean water with the addition of protons that are generated during the oxidation reaction. <br><br>
<h4>Advice on writing your Project Description</h4>
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We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be consist, accurate and unambiguous in your achievements.
 
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Judges like to read your wiki and know exactly what you have achieved. This is how you should think about these sections; from the point of view of the judge evaluating you at the end of the year.
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<video width="800px" height="auto" controls>
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  <source src=" https://static.igem.org/mediawiki/2015/f/f6/Team_Westminster_MFC_Video.mp4" type="video/mp4">
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Your browser does not support the video tag.
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</video> <br>
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<b> Figure 1</b>: Animated working model of a microbial fuel cell<br><br>
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Adapted from
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<a href=" https://www.youtube.com/watch?v=DVI6tMP-rOY/" target="_blank"> https://www.youtube.com/watch?v=DVI6tMP-rOY/</a><br><br>
 
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<h4>References</h4>
 
<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you though about your project and what works inspired you.</p>
 
  
  
  
<h4>Inspiration</h4>
 
<p>See how other teams have described and presented their projects: </p>
 
  
<ul>
 
<li><a href="https://2014.igem.org/Team:Imperial/Project"> Imperial</a></li>
 
<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> UC Davis</a></li>
 
<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">SYSU Software</a></li>
 
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Latest revision as of 00:14, 19 September 2015

Project Description

Shewanella oneidensis MR-1 is an important microorganism in bioremediation due to its diverse respiratory capabilities. It is a dissmilatory metal reducing bacterium. Being facultative organism, it has the ability to adapt to both aerobic and anaerobic environments, as well as utilise a number of toxic compounds such as manganese and uranium. It does this by accepting electrons, which gives Shewanella oneidensis the potential of producing electricity. An electron transfer pathway, known as the Mtr pathway, facilitates the extracellular translocation of electrons that are gained during the reduction of a carbon source.

The Mtr pathway consists of the following five genes:

  • OmcA - an outer membrane decahaeme cytochrome c
  • MtrC - an outer membrane decahaeme cytochrome c
  • MtrA - a periplasmic dechaeme cytochrome c
  • MtrB - a transmembrane porin which stabilises interaction between MtrA and C
  • CymA - an inner membrane tetrahaeme cytochrome c (Figure 1).
  • We have been working on introducing the Mtr pathway into Escherichia coli, in order to increase the electrical output in a microbial fuel cell (MFC). Shewanella oneidensis is capable of transferring these electrons through extensions known as nanowires. However, E.col have a far greater genetic tool set at their disposal, enabling easy genetic manipulation and modification. Further more, they are a very robust microorganism that, when compared to Shewanella oneidensis, are better equipped to deal with changes in a range of environmental variables, e.g. temperature and pH. The carbon source for our modified bacteria will be wastewater.

    We are exploring the possibility of electron transfer through the use of flagella found in E.coli K-12 derivative, DH5-α. E.coli should act as an anode. Formation of biofilm has also been noted in this strain of E.coli. The efficiency of the MFC is down to the biofilm, which is formed when cells adhere to a surface and stick to each other. The composition of these biofilms is what determines the amount of electricity produced as it acts like a conductive matrix, enabling higher kinetics rates of electron transfer along nanowires.

    This technology has a multitude of application. It could be used as an electrical source for hard to reach biosensors such as a deep-water biosensors within a sediment microbial fuel cell. Furthermore, MFSc could play a major role in bioremediation, which is removal of organic pollutants from environments to produce clean water and excess electrical energy.

    What is Microbial Fuel Cell?

    MFC (Figure 1) is a device that utilises micro-organisms ability to catalyse an oxidation and reduction reaction at an anode and cathode electrode, respectively, and can produce electricity when connected to a load/resistor via an external circuit, whilst producing water at the cathode.

    How microbial fuel cell (MFC) works

    In anaerobic conditions, when no oxygen is present the microorganisms produce carbon dioxide, protons and electrons when consuming a carbon source. The architecture of a MFC capitalises on this principal to create electricity. Once the bacteria form a biofilm around the anode, and start to break down organic matter, electrons are striped from the carbon source by an oxidation reaction and translocated out of the cell via an electron transport pathways found only in these specific exoelectrogenic bacteria. These donated electrons are transferred to a carbon electrode (anode) and moved along a wire to a cathode. As electrons move through the wire, they pass through a resistor and an electrical current is generated. At the cathode the electrons reduce atmospheric oxygen to clean water with the addition of protons that are generated during the oxidation reaction.


    Figure 1: Animated working model of a microbial fuel cell

    Adapted from https://www.youtube.com/watch?v=DVI6tMP-rOY/