Difference between revisions of "Team:Chalmers-Gothenburg"

 
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<h2> Welcome to iGEM 2015! </h2>
 
<p>Your team has been approved and you are ready to start the iGEM season! </p>
 
  
<h4>Before you start: </h4>
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<html><a name="introduction"></a></html>
<p> Please read the following pages:</p>
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<h2>Introduction</h2>
<ul>
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<li>  <a href="https://2015.igem.org/Requirements">Requirements page </a> </li>
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<li> <a href="https://2015.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
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</ul>
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<div class="highlightBox">
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<p>The manufacturing process of biological products is complex and requires the use of living cells. Great progress has been made with industrial production techniques but contaminations are still a considerable problem the industry faces. Insufficient control of contaminations in bioreactors could compromise entire batches, resulting in high expenses. A contamination could lead to facilities or equipment having to be shut down for lengthy periods of time in order to conduct investigations and sterilize reactors. Ensuring that the bioreactors only contain the desired producing organism is critical to facility productivity, bioreactor throughput and product quality.</p>
<h4> Styling your wiki </h4>
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<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
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<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>
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</div>
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<h4> Editing your wiki </h4>
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<p>We, <b>Team Chalmers Gothenburg</b>, have developed a novel strategy to detect and combat contaminations in continuous bioreactors, using <i>Saccharomyces cerevisiae</i> as the producing organism.</p>
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>  
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<p> <a href="https://2015.igem.org/wiki/index.php?title=Team:Chalmers-Gothenburg&action=edit"> Click here to edit this page! </a></p>
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<p>See tips on how to edit your wiki on the <a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation</a> page.</p>  
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<p>The method for detection utilizes the pheromone pathway in <i>S. cerevisiae</i> where the GPC-receptor (Ste2) has been replaced with a fusion receptor, allowing the cells to detect ligands from contaminants.  When a ligand binds to the fusion receptor it will activate a phosphorylation cascade within the cell, inducing an expression of <span style="color: #ff6699">red fluorescent proteins</span> that can be observed externally. The method for combating the detected contaminant is based on the use of UV-radiation, which effectively harms all living organisms. In order to prevent the producing cells from becoming inviable from the irradiation treatment, a DNA-repair system from the bacterium <i>Deinococcus radiodurans</i> is implemented into the cells. <i>D. radiodurans</i> is renowned for its extreme resistance to radiation, and our theory is that implementing these enzymes may increase <i>S. cerevisiae</i>'s resistance to radiation, allowing it to survive while the contaminant dies.</p>
  
<h4>Templates </h4>
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<hr>
<p> This year we have created templates for teams to use freely. More information on how to use and edit the templates can be found on the
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<a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation </a> page.</p>  
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<html><a name="sponsors"></a></html>
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<h2> A big thank you to our sponsors! </h2>
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<a href="http://www.chalmers.se/sv/Sidor/default.aspx" target="_blank"><img src="https://static.igem.org/mediawiki/2015/5/5d/AvancezChalmers_black_right.png" width="280px" style="float: left; margin: 10px; border: 1px dashed #ddd"></a>
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<a href="http://www.chalmers.se/en/about-chalmers/alumni/chalmersmastercard/Pages/default.aspx" target="_blank"><img src="https://static.igem.org/mediawiki/2015/b/b6/Mastercard_logo.png" width="280px" style="float: left; margin: 10px; border: 1px dashed #ddd"></a>
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<a href="https://promega.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/f/f5/Promega-Logo_black.png" width="180px" style="float: left; margin: 10px; border: 1px dashed #ddd"></a>
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<a href="http://www.geneious.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/b/b6/Geneious_logo.png" width="180px" style="float: left; margin: 10px; border: 1px dashed #ddd"></a>
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<a href="https://www.qiagen.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/a/a0/Qiagen_logo.png" width="180px" style="float: left; margin: 10px; border: 1px dashed #ddd"></a>
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<hr style="clear: both">
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<div style="height: 70px"></div>
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</div>
  
<h4>Tips</h4>
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</div>
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
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</div>
<ul>
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</div>
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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<li>Be clear about what you are doing and how you plan to do this.</li>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2015.igem.org/Calendar_of_Events">iGEM 2015 calendar</a> </li>
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<li>Have lots of fun! </li>
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</ul>
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<h4>Inspiration</h4>
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<p> You can also view other team wikis for inspiration! Here are some examples:</p>
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<ul>
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<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
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<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
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<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
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<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
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<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
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<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
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</ul>
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<h4> Uploading pictures and files </h4>
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<p> You can upload your pictures and files to the iGEM 2015 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
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When you upload, set the "Destination Filename" to <code>Team:YourOfficialTeamName/NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
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<a href="https://2015.igem.org/Special:Upload">CLICK HERE TO UPLOAD FILES</a>
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Latest revision as of 02:17, 19 September 2015

Introduction

The manufacturing process of biological products is complex and requires the use of living cells. Great progress has been made with industrial production techniques but contaminations are still a considerable problem the industry faces. Insufficient control of contaminations in bioreactors could compromise entire batches, resulting in high expenses. A contamination could lead to facilities or equipment having to be shut down for lengthy periods of time in order to conduct investigations and sterilize reactors. Ensuring that the bioreactors only contain the desired producing organism is critical to facility productivity, bioreactor throughput and product quality.

We, Team Chalmers Gothenburg, have developed a novel strategy to detect and combat contaminations in continuous bioreactors, using Saccharomyces cerevisiae as the producing organism.

The method for detection utilizes the pheromone pathway in S. cerevisiae where the GPC-receptor (Ste2) has been replaced with a fusion receptor, allowing the cells to detect ligands from contaminants. When a ligand binds to the fusion receptor it will activate a phosphorylation cascade within the cell, inducing an expression of red fluorescent proteins that can be observed externally. The method for combating the detected contaminant is based on the use of UV-radiation, which effectively harms all living organisms. In order to prevent the producing cells from becoming inviable from the irradiation treatment, a DNA-repair system from the bacterium Deinococcus radiodurans is implemented into the cells. D. radiodurans is renowned for its extreme resistance to radiation, and our theory is that implementing these enzymes may increase S. cerevisiae's resistance to radiation, allowing it to survive while the contaminant dies.


A big thank you to our sponsors!