Difference between revisions of "Team:NAIT Edmonton/Logbook"

 
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{{NAIT_Edmonton/CSS}}
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{{NAIT_Edmonton/CSS6}}
 
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<link href='http://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'>
 
<link href='http://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'>
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<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jquery/1.6.2/jquery.min.js"></script>
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<link href="https://2015.igem.org/Team:NAIT_Edmonton/reset" rel="stylesheet" type="text/css">
  
<script type="text/javascript" src="http://code.jquery.com/jquery-1.4.4.min.js"></script>
 
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<link href="https://2015.igem.org/Team:NAIT_Edmonton/jquery.booklet.1.1.0?action=raw&amp;ctype=text/css" type="text/css" rel="stylesheet" media="screen" />
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Cufon.replace('.book_wrapper a', {hover:true});
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<body>
 
<body>
  
<style type="text/css">
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<script src="https://2015.igem.org/Template:NAIT_Edmonton/Logbooktimelinejava?action=raw&amp;ctype=text/javascript"></script></script>
.footer{position:fixed;bottom:0px}
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<script src="https://2015.igem.org/Team:NAIT_Edmonton/MainAnimationLogbook?action=raw&amp;ctype=text/javascript"></script> <!-- Resource jQuery -->
</style>
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<div class="header">
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<div class="header_c">
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<a href="https://2015.igem.org/Team:NAIT_Edmonton"><img style="margin-top:15px;" src="https://static.igem.org/mediawiki/2015/2/2f/NAIT_Imagine.png" height="95px"></a>
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</div>
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</div>
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<div class="nav">
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<div tabindex="0" class="onclick-menu">
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    <ul class="onclick-menu-content" style="list-style:none;">
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        <li><a href="https://2015.igem.org/Team:NAIT_Edmonton">home</a></li>
 +
        <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Team">team</a></li>
 +
        <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Project">project</a></li>
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        <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Human">human practices</a></li>
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        <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Notebook">notebook</a></li>
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    </ul>
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</div>
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<div class="navigation">
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<ul>
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                <li><a href="https://2015.igem.org/Team:NAIT_Edmonton"><img
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                src="https://static.igem.org/mediawiki/2015/a/a9/NAIT_home.png" width="25px"></a></li>
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        <div class="header_content">
 
     
 
        <div class="logo"><a href="https://2015.igem.org/Team:NAIT_Edmonton"><img src="https://static.igem.org/mediawiki/2015/4/4a/NAIT_Logo_joy.png" width="291" height="290"></a></div>
 
       
 
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            <ul>
 
                <li class="selected"><a href="https://2015.igem.org/Team:NAIT_Edmonton">home</a>
 
                </li>
 
               
 
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Team">team</a>
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Team">team</a>
                <ul>
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                    <ul>
                    <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Bios">bios</a></li>
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                      <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Bios">bios</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Attributions">attributions</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Attributions">attributions</a></li>
                       <li><a href="https://igem.org/Team.cgi">official team profile</a>
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                       <li><a href="https://igem.org/Team.cgi?id=1787">official team profile</a>
 
                     </ul>
 
                     </ul>
 
                 </li>
 
                 </li>
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                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Project">project</a>
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Project">project</a>
 
                     <ul>
 
                     <ul>
 
                     <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Desc">description</a></li>
 
                     <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Desc">description</a></li>
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Protocols">experiment and protcols</a></li>
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                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Protocols">experiment and protocols</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Results">parts and results</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Results">parts and results</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Modeling">modeling</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Modeling">modeling</a></li>
                      <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Software">software</a></li>
 
 
                     </ul>
 
                     </ul>
 
                 </li>
 
                 </li>
 +
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Human">human practices</a>
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Human">human practices</a>
 
                 <ul>
 
                 <ul>
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                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Practices">policy and practices</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Practices">policy and practices</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Collaborations">collaborations</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Collaborations">collaborations</a></li>
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Entrepreunership">entrepreunership</a></li>
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                     </ul>
 
                     </ul>
 
                 </li>
 
                 </li>
 +
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Notebook">notebook</a>
 
                 <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Notebook">notebook</a>
 
                 <ul>
 
                 <ul>
 
                     <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Safety">lab safety</a></li>
 
                     <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Safety">lab safety</a></li>
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Measurement">measurement</a></li>
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                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Achievements">achievements</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Logbook">log book</a></li>
 
                       <li><a href="https://2015.igem.org/Team:NAIT_Edmonton/Logbook">log book</a></li>
 
                 </ul>
 
                 </ul>
 
                 </li>
 
                 </li>
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             </ul>
 
             </ul>
        </div>
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</div>
        </div>  
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  </div>
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</div>
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</style>
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<div id="wrap">
  
  <div id="wrap">
 
  
 +
<center><div class="top_slogan">Log Book</div></center>
 +
 +
 +
<section id="cd-timeline" class="cd-container">
 +
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-picture">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>First Day in Lab!</h2>
 +
<p>Our team got the overview of our work space for the summer. We were geared and ready to start the iGEM adventure!</p>
 +
<label class="btn" for="modal-001"><P class="cd-read-more">Read more</P></label>
 +
<span class="cd-date">May 4</span>
 +
</div> <!-- cd-timeline-content -->
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</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-movie">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Movie">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Research into Silver Staining</h2>
 +
<p>Before beginning a project, it is of great importance to fully understand what it is you are planning to research. Our team focused on understanding the basics and chemistry of silver staining completely. </p>
 +
<label class="btn" for="modal-002"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">May 4 to 8</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-picture">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Formation of Color in Silver Staining</h2>
 +
<p>What was the scientific basis of color formation post silver staining?</p>
 +
<label class="btn" for="modal-003"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">May 11 to 15</span>
 +
</div> <!-- cd-timeline-content -->
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</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Spruce Grove High School Lab</h2>
 +
<center><img src="https://static.igem.org/mediawiki/2015/6/63/NAIT_SGHSPrep.jpg" width="300px">           
 +
                                </center<<br>
 +
                                <p>Students taking Biology 30 at SGHS came to NAIT today and we were lucky enough to be able to T.A for them.</p>
 +
<label class="btn" for="modal-004"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">May 21</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Alberta Innovates and geekStarter</h2>
 +
<p>Team NAIT went on a road trip to the University of Calgary!</p>
 +
<label class="btn" for="modal-005"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">May 24</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Research Continued...</h2>
 +
                                <p>Getting our wiki set up and looking for sponsorships.</p>
 +
<label class="btn" for="modal-006"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">May 25 to 29</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Getting Our Timeline Set Up</h2>
 +
<p>Time is ticking! We are already into the second month of the summer!</p>
 +
<label class="btn" for="modal-007"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">June 1 to 5</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>techLife and NAIT Photoshoot</h2>
 +
<center><img src="https://static.igem.org/mediawiki/2015/7/75/NAIT_June11Photoshoot.JPG" width="400px">           
 +
                                </center><br>
 +
                                <p>We had a photoshoot with NAIT's techLife magazine. Thank you to Ms. Linda Hoang and Blaise for your patience!</p>
 +
<span class="cd-date">June 11</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Ongoing Research and Practice</h2>
 +
<p>Perfecting our silver stain techniques!</p>
 +
<label class="btn" for="modal-009"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">June 12</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Sequences Ordered!</h2>
 +
                                <p>First four sequences of our own design ordered from IDT!</p>
 +
<span class="cd-date">June 16</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Met the President!</h2>
 +
                                <p>No, not Obama. We met NAIT's President! Dr. Glenn Felthan and NAIT's VP External and CDO, Mr. George Andrews were most accommodating.</p>
 +
<span class="cd-date">June 18</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Article on Synthetic Biology in Canada</h2>
 +
                                <img src="https://static.igem.org/mediawiki/2015/4/4d/1_CXZi1v_400x400.jpg" width="300px">
 +
<p>Submitted an article for Team iGEM Amoy China.</p>
 +
<label class="btn" for="modal-010"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">June 20</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Plasmid and Sequence Digestion</h2>
 +
                                <p>A plasmid double digestion was performed along with digestion of four of our sequences. The sequences used were Arginine, Lysine, Glutamic Acid and Cysteine samples.</p>
 +
<span class="cd-date">June 22</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Sequences Arrived!</h2>
 +
<center><img src="https://static.igem.org/mediawiki/2015/1/1a/NAIT_SequencesDelivered.jpg" width="300px"></center>
 +
<span class="cd-date">June 24</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
<div class="cd-timeline-block" >
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
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<h2>Research, Presentations and Practice</h2>
 +
                                <p>"If we knew what it was we were doing, it would not be called research, would it?" - <b>Albert Einstein</b></p>
 +
<label class="btn" for="modal-011"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">June 22 to 25</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
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 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Presentation to the Office of Research and Innovation</h2>
 +
<p>Today, we were lucky enough to have ORnI hear, assess and critique our preliminary presentation for iGEM. We are so happy to know that we have the full support of so many amazing individuals at the Office of Research and Innovation and at NAIT. </p>
 +
<label class="btn" for="modal-012"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">June 26</span>
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
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</div> <!-- cd-timeline-img -->
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<div class="cd-timeline-content">
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<h2>Happy Canada Day!</h2>
 +
<center><img src="https://static.igem.org/mediawiki/2015/c/c5/NAIT_Canada_Day.jpg" width="300px"></center>
 +
<span class="cd-date">July 1</span>
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
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<div class="cd-timeline-content">
 +
<h2>Pumping out those Sequences</h2>
 +
<p>This week, our team really focused on creating a variety of sequences for testing. Equipped with the knowledge from our literature searches in prior weeks, we crafted each sequence carefully and diligently. As a team, we created and ordered over 25 this week! </p>
 +
<span class="cd-date">June 29 to July 3</span>
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
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</div> <!-- cd-timeline-img -->
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<div class="cd-timeline-content">
 +
<h2>And so the cloning begins...</h2>
 +
                          <center><img src="https://static.igem.org/mediawiki/2015/1/1b/NAIT_July6.jpg" width="300px"></center>
 +
<p>Dr. Marcet helped us get started with cloning! But first, we had to test our enzymes to see if they will properly linearize our plasmid!</p>
 +
<label class="btn" for="modal-013"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">July 6</span>
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
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</div> <!-- cd-timeline-img -->
 +
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<div class="cd-timeline-content">
 +
<h2>Expressing our Custom Sequences in our <i>E. coli</i></h2>
 +
                          <center><img src="https://static.igem.org/mediawiki/2015/8/85/NAIT_Ecoli_AbbieandEduardo.jpg" width="300px"></center>
 +
<p>Got our sequences inserted (hopefully) and now we want to grow our bacteria!</p>
 +
<span class="cd-date">July 10</span>
 +
</div> <!-- cd-timeline-content -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
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<div class="cd-timeline-content">
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<h2>Team BBQ!</h2>
 +
                          <center><img src="https://static.igem.org/mediawiki/2015/e/e5/NAIT_TeamPic_July12.jpg" width="300px"></center>
 +
<p>We had an awesome Sunday barbecue! The sun was shining bright, we had cold drinks and great company - A perfect day.</p>
 +
<label class="btn" for="modal-014"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">July 12</span>
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
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<div class="cd-timeline-content">
 +
<h2>Maya Monday</h2>
 +
                          <center><img src="https://static.igem.org/mediawiki/2015/4/48/NAIT_JiggleProtein_July13.gif" width="300px"></center>
 +
<p>Slowly cranking out those animations! Stay tuned!</p>
 +
 +
<span class="cd-date">July 13</span>
 +
</div> <!-- cd-timeline-content -->
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</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Experiment and Protocols Flowchart</h2>
 +
                         
 +
<p>Drafted and published the first version of our experimental protocols and design! You can view it <a href="https://2015.igem.org/Team:NAIT_Edmonton/Trial10" style="color:#5AB3E3">here.</a></p>
 +
 +
<span class="cd-date">July 16</span>
 +
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
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<div class="cd-timeline-content">
 +
<h2>Officially Registered!</h2>
 +
                                <center><img src="https://static.igem.org/mediawiki/2015/1/14/NAIT_Registered.jpg" width="400px"></center>
 +
<p>SO EXCITED!!!!!!!!!</p>
 +
 +
<span class="cd-date">July 20</span>
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</div> <!-- cd-timeline-content -->
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</div> <!-- cd-timeline-block -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-location">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
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<div class="cd-timeline-content">
 +
<h2>AITF and geekStarter Workshop</h2>
 +
                                <center><img src="https://static.igem.org/mediawiki/2015/b/b6/NAIT_Lethbridge.jpg" width="400px"></center>
 +
<p>NAIT is off for the 6 hour drive to visit a workshop hosted by our co-Albertan team, Team Lethbridge!</p>
 +
<label class="btn" for="modal-015"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">July 24 to 26</span>
 +
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Team Re-Branding</h2>
 +
<p>Today, we stepped away from our original iGEM inspired logo and tried to come up with a new
 +
                                  team identity so that we could stand out from the crowd and our team would leave a lasting 
 +
                                  impression in iGEM.</p>
 +
<label class="btn" for="modal-016"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">July 30</span>
 +
</div> <!-- cd-timeline-content -->
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 +
 +
<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>NAIT Photoshoot and Mini-Prep</h2>
 +
<p>We had another photo shoot with our institution! Eduardo and Joy managed to escape early,         
 +
                                  because of a plasmid mini-prep.</p>
 +
<label class="btn" for="modal-017"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">July 31</span>
 +
</div> <!-- cd-timeline-content -->
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 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Let's Work Together!</h2>
 +
<p>Our team is new to iGEM so we are helping out others as best we can. We've completed many surveys and given feedback to many teams!</p>
 +
<span class="cd-date">August 6</span>
 +
</div> <!-- cd-timeline-content -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Title and Abstract.. Submitted!</h2>
 +
<p>Today was the due date for the final abstract and title for iGEM's brochures and websites.</p>
 +
<label class="btn" for="modal-019"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">August 7</span>
 +
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Officially Argentum!</h2>
 +
<p>Received our new logo concepts from our friend and design advisor, Derek Lue. We changed the layout of our Wiki to what you see now!</p>
 +
<label class="btn" for="modal-020"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">August 10</span>
 +
</div> <!-- cd-timeline-content -->
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 +
<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Abbie's Back!</h2>
 +
<p>Abbie’s last day working her full-time summer student position as a lab tech for Keyera AEF. Time to get into the lab and work on the project!</p>
 +
<span class="cd-date">August 14</span>
 +
</div> <!-- cd-timeline-content -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Go, Team NAIT, GO!</h2>
 +
<p>We're getting an overwhelming amount of support from NAIT. We're even getting golf shirts to wear in Boston!</p>
 +
 +
<center><img src="https://static.igem.org/mediawiki/2015/f/f3/NAIT_ShirtsConcept.png" width="250px"></center>
 +
 +
<span class="cd-date">August 17</span>
 +
</div> <!-- cd-timeline-content -->
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Argentum ... Re- IM[Ag]INE 'd</h2>
 +
<p>Turns out, we cannot use Argentum as our team name. There is a local company that has trademarked that brand and we do not want to get into any trouble.</p>
 +
<label class="btn" for="modal-021"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">August 19</span>
 +
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 +
<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Watch our Intro Video!</h2>
 +
<p>We have a new respect for anyone who has to be in front of the camera as their career.. This less-than-two-minutes video took us a few hours to shoot and edit.</p>
 +
<a href="http://www.youtube.com/watch?v=2pP_L4befgw" class="cd-read-more">Watch it!</a>
 +
<span class="cd-date">August 20</span>
 +
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>iGEM Banner</h2>
 +
<p>Final banner design finished and ready for sending to iGEM HQ. We cannot wait to see our banner hanging at the Hynes Convention Centre.</p><br>
 +
 +
<center><img src="https://static.igem.org/mediawiki/2015/4/4d/NAIT_BannerLogbook.png" width="100%"></center>
 +
 +
<span class="cd-date">August 21</span>
 +
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 +
 +
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<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Collaboration with our New Application Track</h2>
 +
<p>As you know, we're a first-time team. We reached out to our Track mates and asked them to help us out.</p>
 +
<label class="btn" for="modal-023"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">August 26-28</span>
 +
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<div class="cd-timeline-block">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Digestion of Sequences</h2>
 +
<p>All our sequences (23) were digested and in doing so each were cleaved at specific sites to later ligate with our plasmid, pSB1C3.</p>
 +
<span class="cd-date">August 26</span>
 +
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 +
 +
 +
<div class="cd-timeline-block">
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<div class="cd-timeline-img cd-picture">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>IDT Interview</h2>
 +
<p>We got interviewed by one of our primary sponsors, IDT! </p>
 +
<a class="cd-read-more" href="http://www.idtdna.com/pages/decoded/decoded-articles/synthetic-biology/decoded/2015/08/26/igem-teams-engineer-success-with-gblocks-gene-fragments">Read more</a></label>
 +
<span class="cd-date">August 27</span>
 +
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 +
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 +
 +
<div class="cd-timeline-block">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Digestion of Plasmids + rSAP</h2>
 +
<p>We digested our pSB1C3 plasmids to cleave each at specific restriction sites to be able to insert our sequences of interest.</p>
 +
<span class="cd-date">August 28</span>
 +
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 +
<div class="cd-timeline-block">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Presentation.. Round Two!</h2>
 +
<p>We presented to NAIT's Office of Research and Innovation again to give them a rundown on our current progress for our project.</p>
 +
<label class="btn" for="modal-025"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">August 28</span>
 +
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<div class="cd-timeline-block">
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Sequence and Plasmid Ligation</h2>
 +
<p>Ligation was conducted on our sequences of interest to join and bind with
 +
our plasmid pSB1C3 (T7+RBS) backbone.</p>
 +
<span class="cd-date">August 29</span>
 +
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Transformation!</h2>
 +
<p>From ligation, all novel sequences were transformed and plated. We counted a total of 302 colonies from this experiment. (THEY ARE ALIVE!!!!)</p>
 +
<label class="btn" for="modal-026"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">August 31 to September 2</span>
 +
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Colony PCR</h2>
 +
<p>Four 96 well plates and many agarose gels later... We obtained the colonies that  showed to have taken up our sequences!  </p>
 +
<label class="btn" for="modal-026"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">September 2</span>
 +
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<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Picture">
 +
</div> <!-- cd-timeline-img -->
 +
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<div class="cd-timeline-content">
 +
<h2>Grew Our Colonies</h2>
 +
<p>To ensure our colonies would produce adequate protein when induced, we prepared them for harvest during their log phase of growth.</p>
 +
<span class="cd-date">September 5</span>
 +
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<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>IPTG Induction of Proteins</h2>
 +
<p>We're starting to see the light at the end of the tunnel! We induced our proteins with IPTG when they had an absorbance of approximately 0.8. </p>
 +
<span class="cd-date">September 8</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Back to School for NAIT students!</h2>
 +
<p>Noooooooooo</p>
 +
<label class="btn" for="modal-027"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">september 8</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Ni NTA Kit Purification!</h2>
 +
<p>Received our Ni-NTA kit from the University of Alberta.</p>
 +
<span class="cd-date">September 10</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>IM[Ag]INE Shirts have Arrived!</h2>
 +
                                <center><img src="https://static.igem.org/mediawiki/2015/6/6d/NAIT_ImagineShirts.jpg" width="100%">
 +
                                </center><br>
 +
<p>Additionally, we finished pelleting and purifying more samples of our proteins. Unfortunately, not all of them showed a concentration in the NanoDrop.</p>
 +
<span class="cd-date">September 11</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Preliminary Results</h2>
 +
<p>After four months of work, we completed the last step of our experimental design - SDS PAGE and Silver Staining of our synthetic proteins.</p>
 +
<label class="btn" for="modal-028"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">September 13</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Experimental Validation</h2>
 +
<p>We ran more gels in order to validate our preliminary results. Regrettably, the gels failed to run properly and we were unable to finish in time. </p>
 +
<span class="cd-date">September 14</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>The End of our Lab Journey</h2>
 +
<p>And so it ends. Today, we pulled the plug on all remaining lab work and running experiment. Now, it's time to focus on our Wiki, Poster and Presentation.</p>
 +
<span class="cd-date">September 15</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>Wiki FREEZE!!!!!</h2>
 +
<p>Had a blast browsing through our fellow iGEM team's tweets about #WikiFreeze. We're definitely scrambling. AHHH!!!!</p>
 +
<label class="btn" for="modal-029"><p class="cd-read-more">Read more</p></label>
 +
<span class="cd-date">September 18</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
<div class="cd-timeline-block">
 +
<div class="cd-timeline-img cd-location">
 +
<img src="https://static.igem.org/mediawiki/2015/2/27/NAIT_GEAR_White.png" alt="Location">
 +
</div> <!-- cd-timeline-img -->
 +
 +
<div class="cd-timeline-content">
 +
<h2>DestiNAITion: Boston</h2>
 +
<center><img src="https://static.igem.org/mediawiki/2015/3/31/NAIT_DestiNAITion.jpg" width="100%">
 +
                                </center>
 +
<span class="cd-date">September 18</span>
 +
</div> <!-- cd-timeline-content -->
 +
</div> <!-- cd-timeline-block -->
 +
 +
 +
 +
 +
</section> <!-- cd-timeline -->
  
<div class="top_slogan">
 
Our Summer Logbook
 
 
   </div>
 
   </div>
<div class="main_content">
 
  
<center>
+
</div>
  
<div class="book_wrapper">
 
<a id="next_page_button"></a>
 
<a id="prev_page_button"></a>
 
<div id="loading" class="loading">Loading pages...</div>
 
<div id="mybook" style="display:none;">
 
<div class="b-load">
 
<div>
 
<img src="http://upload.wikimedia.org/wikipedia/commons/0/0f/Grosser_Panda.JPG" alt=""/>
 
<h1>Month 1 - May</h1>
 
<p>I propose we do weekly updates on this log book style thing. I think this is a really neat and intuitive way to display the information that we may find and research each week. For homework, we should try and remember what we did for the past few weeks. We can do a lot of things here including <a href="#">linking</a>. Perhaps a weekly link/update?</p>
 
  
</div>
+
<!-- MODAL CONTENT --!>
<div>
+
<img src="http://www.barkteryneexistuje.cz/wp-content/uploads/Cute-Panda-Bears-animals-34915025-2560-1600.jpg" alt="" />
+
<h1>Month 2 - June</h1>
+
<p><a href="#">Week 1</a> - We started school again which makes research difficult</p>
+
                        <p><a href="#">Week 2</a> - Click for details etc.</p>
+
                      <p><a href="#">Week 3</a> - This and this happened this week</p>
+
                        <p><a href="#">Week 4</a> - What do you guys think?</p>
+
  
</div>
+
<input class="modal-state" id="modal-001" type="checkbox" />
<div>
+
<div class="modal">
<img src="http://learn.surbitonhigh.com/pandas2/wp-content/uploads/sites/100/2014/11/cute-panda.jpg" alt="" />
+
  <label class="modal__bg" for="modal-001"></label>
<h1>Month 3 - July</h1>
+
  <div class="modal__inner">
<p>Once upon a time.........</p>
+
</div>
+
<div>
+
<img src="http://www.zooatlanta.org/media/image/panda_cubs2013_140731_meihuan_ZA_7836_600.jpg" alt="" />
+
<h1>Month 4 - August</h1>
+
<p>Abbie - Sloth</p>
+
                        <p>Joy - Panda</p>
+
                        <p>Jo - Mantis Shrimp</p>
+
                        <p>David - Wooly Mammoth</p>
+
                        <p>Eduardo - Snow Cougar</p>
+
                        <p>Kevin - Mammoth rabbit </p>
+
</div>
+
<div>
+
<img src="http://i.huffpost.com/gen/1342502/thumbs/o-PANDA-CUB-900.jpg?6" alt="" />
+
<h1>Crunch Time - September</h1>
+
<p><a href="#">Week 1</a> - We started school again which makes research difficult</p>
+
                        <p><a href="#">Week 2</a></p>
+
</div>
+
</div>
+
</div>
+
</div>
+
       
+
        <!-- The JavaScript -->
+
  
        <script type="text/javascript">
+
    <center><h1>Lab Selfie!</h1></center>
$(function() {
+
    <center><img src="https://static.igem.org/mediawiki/2015/8/88/NAIT_team_first.jpeg" width="400px"></center>
var $mybook = $('#mybook');
+
var $bttn_next = $('#next_page_button');
+
var $bttn_prev = $('#prev_page_button');
+
var $loading = $('#loading');
+
var $mybook_images = $mybook.find('img');
+
var cnt_images = $mybook_images.length;
+
var loaded = 0;
+
//preload all the images in the book,
+
//and then call the booklet plugin
+
  
$mybook_images.each(function(){
+
  </div>
var $img = $(this);
+
</div>
var source = $img.attr('src');
+
$('<img/>').load(function(){
+
++loaded;
+
if(loaded == cnt_images){
+
$loading.hide();
+
$bttn_next.show();
+
$bttn_prev.show();
+
$mybook.show().booklet({
+
name:              null,                            // name of the booklet to display in the document title bar
+
width:              800,                            // container width
+
height:            500,                            // container height
+
speed:              600,                            // speed of the transition between pages
+
direction:          'LTR',                          // direction of the overall content organization, default LTR, left to right, can be RTL for languages which read right to left
+
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+
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+
easeIn:            'easeInQuad',                    // easing method for first half of transition
+
easeOut:            'easeOutQuad',                  // easing method for second half of transition
+
  
closed:            true,                          // start with the book "closed", will add empty pages to beginning and end of book
 
closedFrontTitle:  null,                            // used with "closed", "menu" and "pageSelector", determines title of blank starting page
 
closedFrontChapter: null,                            // used with "closed", "menu" and "chapterSelector", determines chapter name of blank starting page
 
closedBackTitle:    null,                            // used with "closed", "menu" and "pageSelector", determines chapter name of blank ending page
 
closedBackChapter:  null,                            // used with "closed", "menu" and "chapterSelector", determines chapter name of blank ending page
 
covers:            false,                          // used with  "closed", makes first and last pages into covers, without page numbers (if enabled)
 
  
pagePadding:        10,                              // padding for each page wrapper
+
<input class="modal-state" id="modal-002" type="checkbox" />
pageNumbers:        true,                            // display page numbers on each page
+
<div class="modal">
 +
  <label class="modal__bg" for="modal-002"></label>
 +
  <div class="modal__inner">
  
hovers:            false,                            // enables preview pageturn hover animation, shows a small preview of previous or next page on hover
+
    <center><h1>Week 1 - May 4 to 8</h1></center>
overlays:          false,                           // enables navigation using a page sized overlay, when enabled links inside the content will not be clickable
+
    <p>On week one, we focused on finding literature about the specific chemistry of silver staining. In general, we did not find any literature about the specific, molecular interactions of the silver stain dye with proteins. Many of the articles even stated that the exact mechanism of silver staining remains unknown.</p>
tabs:              false,                           // adds tabs along the top of the pages
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+
tabHeight:          20,                              // set the height of the tabs
+
arrows:            false,                          // adds arrows overlayed over the book edges
+
cursor:            'pointer',                      // cursor css setting for side bar areas
+
  
hash:              false,                          // enables navigation using a hash string, ex: #/page/1 for page 1, will affect all booklets with 'hash' enabled
+
  </div>
keyboard:          true,                            // enables navigation with arrow keys (left: previous, right: next)
+
</div>
next:              $bttn_next,          // selector for element to use as click trigger for next page
+
prev:              $bttn_prev,          // selector for element to use as click trigger for previous page
+
  
menu:              null,                            // selector for element to use as the menu area, required for 'pageSelector'
 
pageSelector:      false,                          // enables navigation with a dropdown menu of pages, requires 'menu'
 
chapterSelector:    false,                          // enables navigation with a dropdown menu of chapters, determined by the "rel" attribute, requires 'menu'
 
  
shadows:            true,                            // display shadows on page animations
+
<input class="modal-state" id="modal-003" type="checkbox" />
shadowTopFwdWidth:  166,                            // shadow width for top forward anim
+
<div class="modal">
shadowTopBackWidth: 166,                            // shadow width for top back anim
+
  <label class="modal__bg" for="modal-003"></label>
shadowBtmWidth:    50,                              // shadow width for bottom shadow
+
  <div class="modal__inner">
  
before:            function(){},                    // callback invoked before each page turn animation
+
    <center><h1>Week 2 - May 11 to 15</h1></center>
after:              function(){}                    // callback invoked after each page turn animation
+
    <p>This week, we researched on the scientific basis of color. More specifically, we looked into how the interaction between silver, protein and the polyacrylamide gel produces a certain color. We found that the size of silver nano-particles and the refraction of light is how we perceive different colors.
});
+
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+
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+
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+
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+
        </script>
+
</center>
+
  
  </div>
+
We also tried to look into the electron cloud and how electron excitation produces certain wavelengths of light.</p>
  </div>
+
  
   <div class="clear"></div>  
+
  </div>
 +
</div>
 +
 
 +
 
 +
<input class="modal-state" id="modal-004" type="checkbox" />
 +
<div class="modal">
 +
  <label class="modal__bg" for="modal-004"></label>
 +
  <div class="modal__inner">
 +
 
 +
    <center><h1>Lab with SGHS</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/7/70/NAIT_Group2.jpg" width="400px"></center>
 +
    <br><br> <p> This week, we also helped out Spruce Grove High School with a fun biology lab! We experimented with electrophoresis in agarose gel and visualized DNA strands from a mock crime scene. Additionally, we streaked plates with <i>Serratia marcescens.</i> Overall, the high school trip was a success and we got along really well with the students!</p>
 +
 
 +
  </div>
 +
</div>
 +
 
 +
 
 +
<input class="modal-state" id="modal-005" type="checkbox" />
 +
<div class="modal">
 +
  <label class="modal__bg" for="modal-005"></label>
 +
  <div class="modal__inner">
 +
 
 +
    <center><h1>geekStarter Workshop</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/d/d9/NAIT_geekStarter.jpg" width="450px"></center>
 +
    <p>We attended the geekStarter workshop hosted by Alberta Innovates at the University of Calgary on Sunday, May 24. We presented questions about iGEM to a panel of experts. We also got one on one "speed-mentoring" with the experts as well as an exclusive group meeting with each of the four experts. Meeting the University of Lethbridge team was also quite cool! <br><br>
 +
 
 +
After meeting with the experts, we decided to put the literature review on the back burner so that we could proceed with actual, physical experiments.</p>
 +
 
 +
  </div>
 +
</div>
 +
 
 +
<input class="modal-state" id="modal-006" type="checkbox" />
 +
<div class="modal">
 +
  <label class="modal__bg" for="modal-006"></label>
 +
  <div class="modal__inner">
 +
 
 +
    <center><h1>Week 4 - May 25 to 29 </h1></center>
 +
    <p>This week, we focused on perfecting our silver staining techniques. We are currently troubleshooting our gels because the stain comes out quite dark and with a lot of background staining.</p>
 +
    <br>
 +
    <p>We started reaching out to local start-ups and companies looking for sponsorship and further funding.</p>
 +
    <br>
 +
    <p>Our team also started drafting versions of our wiki on this week. As we are not familiar with the mediaWiki interface, this task proved to be quite difficult. It did, however, go live later in the week. A lot of work is still necessary for the wiki because at this time, there was no content - just a template.</p>
 +
    <br>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/7/7d/NAIT_Wiki_Preliminary_Screenshot.jpg" height="300" width="500"></center>
 +
 
 +
 
 +
  </div>
 +
</div>
 +
 
 +
<input class="modal-state" id="modal-007" type="checkbox" />
 +
<div class="modal">
 +
  <label class="modal__bg" for="modal-007"></label>
 +
  <div class="modal__inner">
 +
 
 +
    <center><h1>Week 1 - June 1 to 5</h1></center>
 +
    <p>This week, we worked on and finalized the DNA sequences to be sent to IDT.</p>
 +
    <br>
 +
    <p><img src="https://static.igem.org/mediawiki/2015/a/a8/NAIT_silver_stains.jpeg"> We also continued perfecting the silver staining techniques outlined by our principal investigator. Unfortunately, we are still experiencing difficulties in background clarity. We tried to switch out the vessels used during staining because we thought that residual silver was affecting our gels. However, even new pyrex containers did not make a difference in our final stained products. We are thinking now that the BioRAD Silver Stain Plus kit that was provided for us contains defective reagents.</p>
 +
 
 +
  </div>
 +
</div>
 +
 
 +
<input class="modal-state" id="modal-009" type="checkbox" />
 +
<div class="modal">
 +
  <label class="modal__bg" for="modal-009"></label>
 +
  <div class="modal__inner">
 +
 
 +
    <h1>Week 2 - June 8 to 12</h1>
 +
    <p>This week, we really decided to focus our efforts into perfecting our silver stain techniques. Additionally, we divided all the tasks we have to do from now until Boston and divided them according to each of our team members strengths.</p> <br>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/2/23/NAIT_mentorship.jpeg" width="450"></center> <br>
 +
    <p> We also changed the look of our wiki this week. We opted for a more centralized design. Our new logo went live this week as well (we had to change it due to branding issues with our institution). We took inspiration from the separated protein bands in SDS-PAGE and we are quite happy with how it turned out. </p><br>
 +
    <p> On June 11th, we were joined by Ms. Linda Hoang and Blaze from our institution in a professional photo shoot for NAIT's <b>techlife magazine</b>. The majority of us had never been in a photoshoot before so it was quite the experience. Our mentors, Marcelo and Matt&eacute;a laughed at us at every step of the way. They also joined the shoot at the end. </p><br>
 +
    <p> Joy and Marcelo started diligently working on or PyMOL and Maya animations this week. </p>
 +
 
 +
 
 +
  </div>
 +
</div>
 +
 
 +
<input class="modal-state" id="modal-010" type="checkbox" />
 +
<div class="modal">
 +
  <label class="modal__bg" for="modal-010"></label>
 +
  <div class="modal__inner">
 +
 
 +
    <center><h1>Genetic Engineering NOW: An introspective look at synthetic biology in Canada</center></h1>
 +
    <center><h3> by Team NAIT 2015</h3></center>
 +
 
 +
    <p> Synthetic Biology (SynBio) is a multidisciplinary branch of science that combines
 +
 
 +
biotechnology; evolutionary, molecular and systems biology; biophysics; and electrical
 +
 
 +
engineering. In many ways, it is related to transgenesis; however, unlike transgenesis,
 +
 
 +
which exchanges existing genes from one organism to another, synthetic biology allows
 +
 
 +
scientists to write and synthesize novel genetic codes and insert them into a living
 +
 
 +
organism (The Canadian Biotechnology Action Network, n.d.). Organisms that express
 +
 
 +
the new genetic codes can then be used to create a molecule of human interest. From
 +
 
 +
cleansing our environment to producing novel medications to treat currently incurable
 +
 
 +
diseases, these genetically engineered organisms can potentially help us solve a
 +
 
 +
multitude of pertaining problems in the future. </p>
 +
 
 +
<br>
 +
 
 +
    <p>
 +
 
 +
However, since synthetic biology is a novel field in research, it needs to gain the
 +
 
 +
trust of the public in order to be successful (Bubela, Hagen, & Einsiedel, 2012). Public
 +
 
 +
awareness and involvement in synthetic biology will help facilitate its acceptance into
 +
 
 +
society as well as aid in focusing it in the development of specific products that are
 +
 
 +
necessary for the community (Bubela, Hagen, & Einsiedel, 2012). Synbiota, a young
 +
 
 +
canadian company that began as an iGEM Team, developed DNA design software that
 +
 
 +
helps in the designing, assembling, testing and re­iterating of genetic circuits created by
 +
 
 +
its users (Synbiota, 2015). Their vision is to create an open ecosystem in which
 +
 
 +
synthetic biology parts and protocols can be generated, exchanged, and be made
 +
 
 +
accessible to the public (Synbiota, 2015). The transparency and public involvement in
 +
 
 +
Synthetic Biology will help to alleviate some of the misconceptions and distrust of the
 +
 
 +
new, emerging science.
 +
 
 +
    </p>
 +
 
 +
<br>
 +
 
 +
    <p>
 +
 
 +
    In addition to public acceptance, SynBio also needs to be supported in industry.
 +
 
 +
Since the year 2000, Genome Canada, a non­profit organization that applies genomics
 +
 
 +
and genomic­based technologies to create social and economic benefits for Canadians,
 +
 
 +
has invested $2.3 billion CAD to decipher and understand the mechanism of
 +
 
 +
economically important plant, microbial, and animal genomes (Genome Canada, 2015)
 +
 
 +
(Quirion, Martin, Meulien, LePage, & Bell, 2014). Moreover, a fraction of that money has
 +
 
 +
been used in developing technological toolkits that can improve the study of synthetic
 +
 
 +
biology (Quirion, Martin, Meulien, LePage, & Bell, 2014). With regards to research
 +
 
 +
centres, the Concordia Centre for Applied Synthetic Biology (CASB), in Montréal, is the
 +
 
 +
first dedicated SynBio centre in Canada. Its main goals are to discover and understand
 +
 
 +
the mechanisms of this novel science, and to research and develop tools, protocols,
 +
 
 +
and technologies that allow the scientific community come up with solutions for current
 +
 
 +
environmental and health matters (Concordia University, n.d.). It additionally deals with
 +
 
 +
societal, legal, and ethical concerns with regards to SynBio in order to allow the
 +
 
 +
conscientious development of this scientific field (Concordia University, n.d.). For
 +
 
 +
synthetic biology to become a successful discipline, multiple areas of expertise must
 +
 
 +
synergize (Quirion, Martin, Meulien, LePage, & Bell, 2014). Along with biotechnology,
 +
 
 +
research in law, business, social sciences, and humanities is necessary to resolve the
 +
 
 +
ethical, supply chain management, societal, and cultural adaptation issues that will arise
 +
 
 +
with the current and future development of synthetic biology (Quirion, Martin, Meulien,
 +
 
 +
LePage, & Bell, 2014).
 +
   
 +
    </p>
 +
 
 +
<br>
 +
 
 +
    <p>
 +
 
 +
Nonetheless, the development of this science challenges the present regulatory
 +
 
 +
framework, laws, and public opinion (Bubela, Hagen, & Einsiedel, 2012). In order to
 +
 
 +
constitute relevant regulations pertaining synthetic biology, policy makers must oversee
 +
 
 +
every advancement made in this field and weigh out its risks and benefits (Bubela,
 +
 
 +
Hagen, & Einsiedel, 2012). An analysis on the current regulations must be done to
 +
 
 +
address the gaps in law, and to create new legislations that ensure that the public and
 +
 
 +
scientists will both be protected (Bubela, Hagen, & Einsiedel, 2012). Currently in
 +
 
 +
Canada, any product synthesized by biotechnological means is treated as any other
 +
 
 +
product: regulation is initiated based on the innovative trait of the product (European
 +
 
 +
Commision, 2014). Risk evaluations are done in a scientific and product­based form by
 +
 
 +
Health Canada, the government agency that assesses and manages the risks of health,
 +
 
 +
food, and environmental/industrial products (European Commision, 2014).
 +
 
 +
    </p>
 +
 
 +
<br>
 +
 
 +
    <p>
 +
 
 +
With regards to the future of SynBio in Canada, Montréal’s Concordia University
 +
 
 +
held a workshop to discuss how synthetic biology can be integrated into Canada's
 +
 
 +
future, creating a rough outline of its plan of action in October 2014. This outline
 +
 
 +
involved cross­sectoral alliances, and the direction of money towards research and
 +
 
 +
development in this particular area. Furthermore, in November 2014, Genome Canada
 +
 
 +
gathered Parliamentary representatives, senior public servants, and representatives of
 +
 
 +
industry, academia, and research agencies to discuss how genomics and synthetic
 +
 
 +
biology could influence the country’s resource sectors and, at the same time, protect
 +
 
 +
and preserve the environment (Quirion, Martin, Meulien, LePage, & Bell, 2014).
 +
 
 +
 
 +
    </p>
 +
 
 +
<br>
 +
 
 +
    <p>
 +
 
 +
Canada is definitely making a conscious effort to advance the new field of
 +
 
 +
SynBio. The First Research Excellence Fund, which was recently introduced into the
 +
 
 +
Canadian Budget, aims to empower postsecondary research institutions. By helping
 +
 
 +
researchers develop into a highly qualified workforce with world­leading capabilities,
 +
 
 +
Canada can stay internationally competitive in the research scene while remaining
 +
 
 +
up­to­date with cutting­edge technology ­ a benefit to all Canadians (Merson, 2014).
 +
 
 +
The proposed budget will deliver $200 million CAD annually by 2018, meaning that
 +
 
 +
within the next decade, the fund will provide approximately $1.5 billion CAD to help
 +
 
 +
establish Canadian universities and post­secondary institutions as global leaders in
 +
 
 +
research and innovation. (Merson, 2014).
 +
 
 +
    </p>
 +
 
 +
<br>
 +
 
 +
    <p>
 +
 
 +
Like the United Kingdom and America before it, Canada has begun to see the
 +
 
 +
importance of Synthetic Biology and how this new science can revolutionize the future
 +
 
 +
of our societies. From eliminating world hunger to adapting to rapid climate change,
 +
 
 +
Synthetic Biology has the potential to solve many of the present challenges that we
 +
 
 +
face. However, many factors contribute to the success of a science in Canada; such as
 +
 
 +
public opinion and lawful regulation. Although difficult to establish a new,
 +
 
 +
groundbreaking science in Canada, investing in Synthetic Biology has been regarded as
 +
 
 +
a necessary risk and a research priority.
 +
 
 +
      </p>
 +
 
 +
<br>
 +
 
 +
<center><i> If you would like a PDF of our article or access to our sources, click <a style="color:#5AB3E3" href="https://static.igem.org/mediawiki/2015/2/25/NAIT_Article_for_Amoy_Team_version_2.pdf">here</a>. </i></center>
 +
<center> <i>Amoy's full newsletter on the state of SynBio around the world can be accessed <a style="color:#5AB3E3" href="https://static.igem.org/mediawiki/2015/c/c9/NAIT_collaberation_newsletter.pdf">here</a></i></center>
 +
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 +
    <center><h1>Weekly Recap</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/c/cb/NAIT_June26Practice.jpg" width="400px"></center>
 +
   <br>   
 +
<p> Much of our time this week was dedicated to perfecting and polishing the preliminary presentation we plan to give on Friday, June 26 to NAIT's Office of Research and Innovation (formerly novaNAIT). Eduardo stepped up to the plate to deliver this presentation solo.</p>
 +
    <br>
 +
    <p> On June 24, Joy, Kevin and Jo met up with Armen, a bioinformatician from the University of Alberta. They discussed how programs such as PyMOL and PDBePISA may be of help for simulating our project. Armen will most likely be working most closely with Joy and Kevin for the project. The meeting was quite fruitful and we consider ourselves lucky to have such an experienced individual on board with our project. </p>
 +
    <br>
 +
    <p> June 25, we had our second meeting with NAIT's VP External and CDO, Mr. George Andrews. The CEO of Guardian Chemicals, Mr. Stewart Roth, was also present and gave us very valuable advice about the future steps necessary for our project. In addition to Mr. Roth and Mr. Andrews, we were also lucky to be joined by NAIT's Executive of Marketing and Communications (Susan Cline), Brand Manager (Sana Al Jamea) and techLife Editor (Scott Messenger) - all of whom gave sound advice for us as we go forward. Stay tuned for the cool collaborations we may do with our institution. </p><br>
 +
 
 +
    <p> This week, our team also heard back from a University in Columbia about an exciting opportunity to collaborate. More on this in later weeks. </p>
 +
 
 +
 
 +
  </div>
 +
</div>
 +
 
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 +
    <center><h1>Thank You, Office of Research and Innovation</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/e/e3/NAIT_nexen.jpeg" width="400px"></center><br>
 +
    <p>We are so lucky to have the support of such amazing people at NAIT. Eduardo did a phenomenal job presenting our ideas to the Office of Research and Innovation which made them very excited for the future of our project. They gave excellent critique about our presentation and we definitely plan to consider their comments for our iGEM presentation in September. After today, we decided to schedule two more meetings before we leave for Boston! We are successfully spreading our excitement about this project!</p>
 +
<br>
 +
    <p><b>Special thanks</b> to those who attended: Sandra Spencer, Stacey Ohlmann, Ryan Leskiw, Wade Muri, Chris Dambrowitz, Robin Mazumder, Iain Mackie, Albana Zeko, Kelly Maher, Andrew Pryor, Laurie Allen and our wonderful mentors, Marcelo Marcet and Mattéa Bujold.</p>
 +
 
 +
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 +
</div>
 +
 
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 +
 
 +
    <center><h1>And the results for the day...</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/c/c2/NAIT_AgaroseJuly6.jpg" width="400px"></center><br>
 +
    <p>After getting our sequences ordered and delivered, it was time to start the lab work! First thing we had to do was ensure that our enzymes were properly working.</p>
 +
<br>
 +
    <p><b>Lane 1:</b> DNA Marker</p>
 +
    <p><b>Lane 2:</b> Double digest of our plasmid </p>
 +
    <p><b>Lane 3:</b> Digest of our plasmid with only one of the two enzymes</p>
 +
    <p><b>Lane 4:</b> Digest of our plasmid with the other one of the two enzymes </p>
 +
    <p><b>Lane 5:</b> Undigested plasmid </p><br>
 +
 
 +
    <p> Looking at the gel above, the bands show that our double digestion worked and that both enzymes are functioning correctly. In Lane 2, we now have our linear plasmid and a shorter excised fragment that cannot be visualized in the gel. Lanes 3 and 4, conversely, do not contain that fragment because the plasmid only underwent a single digestion. Lane 5 enables us to see the difference between a linear plasmid and a supercoiled plasmid. (The supercoiled, circular plasmid travelled further down the gel and thus the band is seen lower).</p>
 
    
 
    
 
+
 
 +
  </div>
 
</div>
 
</div>
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 +
 +
    <center><h1>NAIT Team Barbecue</h1>
 +
    <img src="https://static.igem.org/mediawiki/2015/e/ec/NAIT_BBQ01_July12.jpg" width="400px"><br>
 +
    An awesome day!<br>
 +
    <img src="https://static.igem.org/mediawiki/2015/9/98/NAIT_BBQ02_July12.jpg" width="400px"><br>
 +
    Joy even made an iGEM cake! <br>
 +
    <img src="https://static.igem.org/mediawiki/2015/7/72/NAIT_BBQ03_July12.jpg" width="400px"><br>
 +
    We also played badminton in 30 degree weather. <br>
 +
    <br>
 +
    <i>To see more of our photos, check out our facebook page <a style="color:#5AB3E3" href="http://www.facebook.com/media/set/?set=a.922471287814691.1073741829.884025281659292&type=3">here</a></i>
 +
  </center>
 +
</div>
 +
</div>
 +
 +
 +
 
 +
 +
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 +
    <center><h1>AITF geekStarter Workshop at Lethbridge </h1></center>
 +
<br>
 +
<p>We had an amazing trip to Lethbridge this weekend. We left on Friday because the drive was over six hours long! But luckily, we were all in good company and the time just flew by. </p><br>
 +
 +
<p>Our home for the weekend was an amazing 4-bedroom University of Lethbridge dorm apartment, Mount Blakiston. We didn't sleep much because there was always work to do but the couches were very comfortable! :D </p><br>
 +
 +
<center><img src="https://static.igem.org/mediawiki/2015/2/29/NAIT_Lethbridge_PJSelfie.jpg" width="400px"></center><br>
 +
 +
<p>On Saturday, July 25 (after our Tim Hortons run, of course) we showcased Project Argentum to Team Lethbridge and a panel of four experts: Mr. César Rodriguez, FSU; Mr. André Laroche, AgriFood Canada; Mr. David Lloyd, FREDsense; and Mr. Patrick Wu, Synbiota Inc. We received incredible advice on how to improve upon our presentation. Although Eduardo did an amazing job presenting, there are still many parts we can improve upon such as:</p><br>
 +
 +
<p>- Why our project is important</p>
 +
<p>- Add more information on our sequence design</p><br>
 +
 +
<p>After watching UofL's awesome RNAi presentation, we had one on one talks with César and Patrick and then André and David. Cesar and Patrick helped us by going over our entire presentation and making specific suggestions. Patrick and André helped us with seeing a new, exciting potential application of our technology and rethinking our policy and practices. The last event on Saturday was a two hour session with César, discussing our project and how we can improve upon it. During this talk, we even realized we were designing our sequences completely incorrectly. </p><br>
 +
 +
<p>We ended our Saturday eating "Kick-Ass Burgers" at Pop's Pubhouse with Team Lethbridge, Jennifer Hill, Sarah Lee and the four experts. It was an amazing (but tiring) day. </p><br>
 +
 +
<center><b>Sunday, July 26</b></center><br>
 +
 +
<p>Sunday started with a very informative Wiki/Presentation/Design Presentation from Patrick followed by a one-on-one session with him looking at our Wiki specifically. </p><br>
 +
 +
<p>After a short break, we had a Skype session with Ms. Jane Calvert from Edinburgh discussing Policy and Practices. We had the opportunity to ask her questions after her talk. Although Skype calls lag quite a bit, we still received helpful information from Jane.</p><br>
 +
 +
<p>After lunch, we had a workshop/interactive activty with David Lloyd, co-founder of FREDsense, a company that laid its roots in iGEM 2013. David helped us realize how much thought needs to be put in to a business and business plan. Additionally, he helped both Team NAIT and Lethbridge by introducing the concept of a Business Canvas to our teams and helping us fill them out. We even looked over and filled out Team Lethbridge's canvas and they looked over and added to ours.</p><br>
 +
 +
<p>Cesar also gave a talk today on the Imagine, Design, Create workflow. He discussed with us his other triads of thought including: Empathy, Curiousity, Ingenuity; Software, Wetware, Hardware; Imagine, Design, Create; and Passion, Creativity, Excellence. What an enlightening talk!</p><br>
 +
 +
<p>We had an awesome trip! Thank you, Team Lethbridge, most especially Suneet and Graeme, for hosting an amazing event.</p>
 +
 +
 +
 +
 +
  </div>
 +
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 +
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 +
    <center><h1>Who Are We? Team ARGENTUM!</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/c/c7/NAIT_IGEM_Separated.png" width="250px"></center>
 +
    <p>Today, we met with NAIT's Branding department to try and come up with a new identity for our team. Previously, we had derived our team logo from the original iGEM logo. Sana and Derek at the Branding and Marketing office gave great advice on how we can make our team stand out. Although our original logo was nice and embodied out project well, it did not give our team its own personal identity.  </p><br>
 +
    <p>We settled on a new team name: ARGENTUM. The Latin word for silver, our project is mainly about the reaction between silver staining reagents and proteins. We had already used Argentum as our project name so the transition from project name to team name was easy. Woo hoo!</p>
 +
 +
  </div>
 +
</div>
 +
 +
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 +
 +
    <center><h1>NAIT Viewbook Photoshoot</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/6/6d/NAIT_Viewbook.jpg" width="400px"></center>
 +
    <p>The front cover of NAIT's 2016-2017 Viewbook now has some of our faces on it!</p><br>
 +
<p>The photoshoot was on such a hot day that we had to take all the photographs in the shade. The shoot
 +
lasted almost two hours!</p><br>
 +
    <p>Luckily, Eduardo and Joy managed to escape the shoot and return to mini-prepping the backbones that
 +
we are going to use for the competition - pSB1C3. We did over 50 minipreps that day. </p>
 +
 +
  </div>
 +
 +
</div>
 +
 +
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 +
 +
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 +
    <center><h1>Final Abstract and Title Submitted - New Application Track, Here We Come!</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/8/8f/2015igembanner.jpg" width="100%"></center>
 +
    <p><b>Development and Characterization of Protein Motifs to Generate Colours upon Interaction with Silver
 +
 +
Staining Reagents</b></p><br>
 +
<p>SDS-PAGE is a very popular technique used to separate proteins based on their size. Embedded proteins,
 +
 +
invisible to the naked eye, are then visualized by staining. Among the various staining techniques, silver
 +
 +
staining is easy to perform and highly sensitive. However, the outcome is a series of monochromatic protein
 +
 +
bands. Previously, we observed that some proteins inherently produce different hues post-staining. We hypothesized
 +
 +
that specific amino acid configurations yield coloured bands after reacting with silver staining reagents.
 +
 +
To test our hypothesis, we created numerous amino acid motifs to elucidate the sequences that would generate
 +
 +
specific colours following silver staining. Our findings will let us generate a molecular weight marker with
 +
 +
the innate capacity of providing users colour-coded bands post-staining without the use of impregnating
 +
 +
dyes. Our technology will also pave the way for new types of colorimetric assays using synthetic
 +
 +
proteins.</p><br>
 +
 +
 +
  </div>
 +
 +
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 +
 +
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 +
 +
    <center><h1>Argentum.. REDESIGNED</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/3/39/NAIT_LegacyLogo.png" width="100%"></center><br>
 +
    <p>We received our new logos from our design mentor and friend, Mr. Derek Lue. We opted to keep our original idea of     
 +
        descending bands but we added multiple colours to it instead of using only pink and blue.</p><br>
 +
 +
  </div>
 +
 +
</div>
 +
 +
 +
 +
 +
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 +
 +
    <center><h1>IM[Ag]INE that..</h1></center>
 +
    <center><img src="https://static.igem.org/mediawiki/2015/f/f4/NAIT_ImagineOutline.png" width="100%"></center><br>
 +
    <p>Another identity change! Our team has gone through three this summer. We are, however, very happy with this latest one and we are quite sure that this is the one we will be using in Boston.</p><br>
 +
 +
<p>IM[Ag]INE completely embodies our team's summer story. We started iGEM with the smallest of ideas - gaining colour - and we imagined a whole spectrum of uses and future directions. The box around Ag is a call out to the periodic table of elements and also acknowledges the fact that our research revolved around the interactions of silver ions with specific amino acids. As with our previous logos, we decided to retain the banded letters effects of multiple colours. These bands are remeniscient of the bands seen after staining in a polyacrylamide gel but, of course, they are in colour!</p><br>
 +
 +
<p><i>"Imagination is more important than knowledge. For knowledge is limited to all we now know and understand, while imagination embraces the entire world, and all there ever will be to know and understand."</i> - Albert Einstein </p>
 +
 +
  </div>
 +
 +
</div>
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    <center><h1>New Application Buddies!</h1></center>
 +
    <p>As part of our human practices we invited all the teams from our track to attempt the first ever, complete inter-track collaboration! Of the 30 teams, 7 answered the call. Over the course of one week, we conducted a series of 10-15 minute interviews on Skype, where we inquired about their iGEM 2015 journey. To learn more about how we integrated the interviews with our Human Practices project, head over to our <a href="https://2015.igem.org/Team:NAIT_Edmonton/Practices"><font color="red">Policy and Practices</font></a> page to learn more!</p><br>
 +
 +
 +
  </div>
 +
 +
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 +
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    <center><h1>Office of Research and Innovation - Presentation 2</h1>
 +
<img src="https://static.igem.org/mediawiki/2015/1/1b/NAIT_Pres2.jpg" width="100%"></center>
 +
    <p>In this presentation we went through the run down of SDS PAGE and the bio brick backbone used to create our proteins. We also went deeper in the process on how to produce the colour and specific amino acid configurations we engineered. The point for this presentation is to practice our presentation skills and also get feedback on our progress. The Office of Research and Innovation gave us excellent suggestions for improving our final PowerPoint for iGEM.</p>
 +
 +
 +
  </div>
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 +
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    <center><h1>Transforming our Bacteria</h1>
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<img src="https://static.igem.org/mediawiki/2015/d/d6/NAIT_Tplate1.jpeg" width="100%"></center><br>
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    <p>From ligation, all novel sequence plates had growth which means some of those colonies may contain our custom DNA!!! </p>
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    <center><h1>First Day of School!</h1>
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<img src="https://static.igem.org/mediawiki/2015/a/ad/NAIT_Stuff.jpeg" width="100%"></center><br>
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    <p>Darn. We no longer have the entire institution to ourselves...</p>
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    <center><h1>Preliminary Results!</h1>
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<img src="https://static.igem.org/mediawiki/2015/7/7d/NAIT_PrelimResultsSelfie.jpg" width="100%"></center><br>
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    <p>We can see the light!!!!</p>
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    <center><h1>AHHHH!!! The HOME STRETCH</h1>
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<img src="https://static.igem.org/mediawiki/2015/5/58/NAIT_WikiFREEEEEZE.jpg" width="100%"></center><br>
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    <p>It's a mad rush here at NAIT's HP Centre. OH MY GODDDDD.</p>
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Latest revision as of 03:11, 19 September 2015

Team NAIT 2015

Log Book
Picture

First Day in Lab!

Our team got the overview of our work space for the summer. We were geared and ready to start the iGEM adventure!

May 4
Movie

Research into Silver Staining

Before beginning a project, it is of great importance to fully understand what it is you are planning to research. Our team focused on understanding the basics and chemistry of silver staining completely.

May 4 to 8
Picture

Formation of Color in Silver Staining

What was the scientific basis of color formation post silver staining?

May 11 to 15
Location

Spruce Grove High School Lab

Students taking Biology 30 at SGHS came to NAIT today and we were lucky enough to be able to T.A for them.

May 21
Location

Alberta Innovates and geekStarter

Team NAIT went on a road trip to the University of Calgary!

May 24
Location

Research Continued...

Getting our wiki set up and looking for sponsorships.

May 25 to 29
Location

Getting Our Timeline Set Up

Time is ticking! We are already into the second month of the summer!

June 1 to 5
Location

techLife and NAIT Photoshoot


We had a photoshoot with NAIT's techLife magazine. Thank you to Ms. Linda Hoang and Blaise for your patience!

June 11
Location

Ongoing Research and Practice

Perfecting our silver stain techniques!

June 12
Location

Sequences Ordered!

First four sequences of our own design ordered from IDT!

June 16
Location

Met the President!

No, not Obama. We met NAIT's President! Dr. Glenn Felthan and NAIT's VP External and CDO, Mr. George Andrews were most accommodating.

June 18
Location

Article on Synthetic Biology in Canada

Submitted an article for Team iGEM Amoy China.

June 20
Location

Plasmid and Sequence Digestion

A plasmid double digestion was performed along with digestion of four of our sequences. The sequences used were Arginine, Lysine, Glutamic Acid and Cysteine samples.

June 22
Location

Sequences Arrived!

June 24
Location

Research, Presentations and Practice

"If we knew what it was we were doing, it would not be called research, would it?" - Albert Einstein

June 22 to 25
Location

Presentation to the Office of Research and Innovation

Today, we were lucky enough to have ORnI hear, assess and critique our preliminary presentation for iGEM. We are so happy to know that we have the full support of so many amazing individuals at the Office of Research and Innovation and at NAIT.

June 26
Location

Happy Canada Day!

July 1
Location

Pumping out those Sequences

This week, our team really focused on creating a variety of sequences for testing. Equipped with the knowledge from our literature searches in prior weeks, we crafted each sequence carefully and diligently. As a team, we created and ordered over 25 this week!

June 29 to July 3
Location

And so the cloning begins...

Dr. Marcet helped us get started with cloning! But first, we had to test our enzymes to see if they will properly linearize our plasmid!

July 6
Location

Expressing our Custom Sequences in our E. coli

Got our sequences inserted (hopefully) and now we want to grow our bacteria!

July 10
Location

Team BBQ!

We had an awesome Sunday barbecue! The sun was shining bright, we had cold drinks and great company - A perfect day.

July 12
Location

Maya Monday

Slowly cranking out those animations! Stay tuned!

July 13
Location

Experiment and Protocols Flowchart

Drafted and published the first version of our experimental protocols and design! You can view it here.

July 16
Location

Officially Registered!

SO EXCITED!!!!!!!!!

July 20
Location

AITF and geekStarter Workshop

NAIT is off for the 6 hour drive to visit a workshop hosted by our co-Albertan team, Team Lethbridge!

July 24 to 26
Picture

Team Re-Branding

Today, we stepped away from our original iGEM inspired logo and tried to come up with a new team identity so that we could stand out from the crowd and our team would leave a lasting impression in iGEM.

July 30
Picture

NAIT Photoshoot and Mini-Prep

We had another photo shoot with our institution! Eduardo and Joy managed to escape early, because of a plasmid mini-prep.

July 31
Picture

Let's Work Together!

Our team is new to iGEM so we are helping out others as best we can. We've completed many surveys and given feedback to many teams!

August 6
Picture

Title and Abstract.. Submitted!

Today was the due date for the final abstract and title for iGEM's brochures and websites.

August 7
Picture

Officially Argentum!

Received our new logo concepts from our friend and design advisor, Derek Lue. We changed the layout of our Wiki to what you see now!

August 10
Picture

Abbie's Back!

Abbie’s last day working her full-time summer student position as a lab tech for Keyera AEF. Time to get into the lab and work on the project!

August 14
Picture

Go, Team NAIT, GO!

We're getting an overwhelming amount of support from NAIT. We're even getting golf shirts to wear in Boston!

August 17
Picture

Argentum ... Re- IM[Ag]INE 'd

Turns out, we cannot use Argentum as our team name. There is a local company that has trademarked that brand and we do not want to get into any trouble.

August 19
Picture

Watch our Intro Video!

We have a new respect for anyone who has to be in front of the camera as their career.. This less-than-two-minutes video took us a few hours to shoot and edit.

Watch it! August 20
Picture

iGEM Banner

Final banner design finished and ready for sending to iGEM HQ. We cannot wait to see our banner hanging at the Hynes Convention Centre.


August 21
Picture

Collaboration with our New Application Track

As you know, we're a first-time team. We reached out to our Track mates and asked them to help us out.

August 26-28
Picture

Digestion of Sequences

All our sequences (23) were digested and in doing so each were cleaved at specific sites to later ligate with our plasmid, pSB1C3.

August 26
Picture

IDT Interview

We got interviewed by one of our primary sponsors, IDT!

Read more August 27
Picture

Digestion of Plasmids + rSAP

We digested our pSB1C3 plasmids to cleave each at specific restriction sites to be able to insert our sequences of interest.

August 28
Picture

Presentation.. Round Two!

We presented to NAIT's Office of Research and Innovation again to give them a rundown on our current progress for our project.

August 28
Picture

Sequence and Plasmid Ligation

Ligation was conducted on our sequences of interest to join and bind with our plasmid pSB1C3 (T7+RBS) backbone.

August 29
Picture

Transformation!

From ligation, all novel sequences were transformed and plated. We counted a total of 302 colonies from this experiment. (THEY ARE ALIVE!!!!)

August 31 to September 2
Picture

Colony PCR

Four 96 well plates and many agarose gels later... We obtained the colonies that showed to have taken up our sequences!

September 2
Picture

Grew Our Colonies

To ensure our colonies would produce adequate protein when induced, we prepared them for harvest during their log phase of growth.

September 5
Location

IPTG Induction of Proteins

We're starting to see the light at the end of the tunnel! We induced our proteins with IPTG when they had an absorbance of approximately 0.8.

September 8
Location

Back to School for NAIT students!

Noooooooooo

september 8
Location

Ni NTA Kit Purification!

Received our Ni-NTA kit from the University of Alberta.

September 10
Location

IM[Ag]INE Shirts have Arrived!


Additionally, we finished pelleting and purifying more samples of our proteins. Unfortunately, not all of them showed a concentration in the NanoDrop.

September 11
Location

Preliminary Results

After four months of work, we completed the last step of our experimental design - SDS PAGE and Silver Staining of our synthetic proteins.

September 13
Location

Experimental Validation

We ran more gels in order to validate our preliminary results. Regrettably, the gels failed to run properly and we were unable to finish in time.

September 14
Location

The End of our Lab Journey

And so it ends. Today, we pulled the plug on all remaining lab work and running experiment. Now, it's time to focus on our Wiki, Poster and Presentation.

September 15
Location

Wiki FREEZE!!!!!

Had a blast browsing through our fellow iGEM team's tweets about #WikiFreeze. We're definitely scrambling. AHHH!!!!

September 18
Location

DestiNAITion: Boston

September 18