Difference between revisions of "Team:UNC-Chapel Hill/Notebook"
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<td width="100%" height="4px" bgColor="#FFFFFF" > | <td width="100%" height="4px" bgColor="#FFFFFF" > | ||
| − | <h3 | + | <h3 style="color:#56A0D3; font-size:30px">Notebook</h3> |
<p> | <p> | ||
| + | |||
| + | <h4 style = "font-size: 40 px"> Format </h> | ||
| + | <p> | ||
| + | Month Day, Year | ||
| + | <p><p id ="May"> | ||
| + | Name(s) of people who completed work | ||
| + | Protocol(s) used | ||
| + | <p> | ||
| + | More detailed description | ||
| + | </p> | ||
<h4 style = "font-size: 24 px"> May 18th, 2015 </h> | <h4 style = "font-size: 24 px"> May 18th, 2015 </h> | ||
| − | + | <p> | |
| − | + | Connor and Sean | |
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Resuspended parts BBa_E1010 and BBa_I716120 on plate 3 well 11n and plate 3 well 11m, respectively. Transformed both and placed in 37 degree incubator | Resuspended parts BBa_E1010 and BBa_I716120 on plate 3 well 11n and plate 3 well 11m, respectively. Transformed both and placed in 37 degree incubator | ||
*Note: parts left in 37 degree incubator too long (>24 hours) and overgrew | *Note: parts left in 37 degree incubator too long (>24 hours) and overgrew | ||
</p> | </p> | ||
| − | <h4 | + | <h4 style = "font-size: 24 px"> May 21st, 2015 </h> |
<p> | <p> | ||
May 21st, 2015 | May 21st, 2015 | ||
| + | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p id = "June"> | ||
Resuspended part BBa_K118011 on plate 3 well 20c. Transformed this part along with BBa_E1010 again. | Resuspended part BBa_K118011 on plate 3 well 20c. Transformed this part along with BBa_E1010 again. | ||
</p> | </p> | ||
| + | |||
| + | <p ></p> | ||
<h4 style = "font-size: 24 px"> June 3rd, 2015 </h> | <h4 style = "font-size: 24 px"> June 3rd, 2015 </h> | ||
<p> | <p> | ||
Connor and Sean | Connor and Sean | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Resuspended parts BBa_K1033916 and BBa_K592009 on plate 4 well 6m and plate 1 well 15e, respectively. Transformed those parts and BBa_E1010. | Resuspended parts BBa_K1033916 and BBa_K592009 on plate 4 well 6m and plate 1 well 15e, respectively. Transformed those parts and BBa_E1010. | ||
| + | <p> | ||
*Note: BBa_K1033916 plate was thrown out due to suspicion of LBKanR mislabeling and the two other chromoproteins appear to have been switched. | *Note: BBa_K1033916 plate was thrown out due to suspicion of LBKanR mislabeling and the two other chromoproteins appear to have been switched. | ||
| + | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed parts BBa_E1010, BBa_K1033916, BBa_K592009, BBa_K861171 and BBa_K118011. | Transformed parts BBa_E1010, BBa_K1033916, BBa_K592009, BBa_K861171 and BBa_K118011. | ||
| + | <p> | ||
Will and Jerry | Will and Jerry | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped parts BBa_K861171 and BBa_K118011. Prepared 1x TAE Buffer from stock. | Miniprepped parts BBa_K861171 and BBa_K118011. Prepared 1x TAE Buffer from stock. | ||
</p> | </p> | ||
| Line 89: | Line 115: | ||
<p> | <p> | ||
Will | Will | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Did overall inventory and plated BBa_K861171 | Did overall inventory and plated BBa_K861171 | ||
| + | <p> | ||
Connor and Sean | Connor and Sean | ||
| + | <p> | ||
Liquid Cultures | Liquid Cultures | ||
| − | Created liquid cultures of BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and placed in 37 degree shaking incubator overnight | + | <p> |
| + | Created liquid cultures of BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and placed in 37 degree shaking incubator overnight. | ||
| + | <p> | ||
*Note: Liquid cultures spent >24 hours in 37 degree incubator, so thrown out. Also, BBa_K118011 failed to grow. | *Note: Liquid cultures spent >24 hours in 37 degree incubator, so thrown out. Also, BBa_K118011 failed to grow. | ||
</p> | </p> | ||
| Line 99: | Line 131: | ||
<p> | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
Liquid Cultures | Liquid Cultures | ||
| + | <p> | ||
Created liquid cultures of BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and placed in 37 degree shaking incubator overnight. LB was autoclaved and placed in 4 degree fridge. | Created liquid cultures of BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and placed in 37 degree shaking incubator overnight. LB was autoclaved and placed in 4 degree fridge. | ||
</p> | </p> | ||
| Line 105: | Line 139: | ||
<p> | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and nanodropped for concentrations. | Miniprepped BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and nanodropped for concentrations. | ||
</p> | </p> | ||
| Line 111: | Line 147: | ||
<p> | <p> | ||
Will | Will | ||
| + | <p> | ||
Did overall inventory and made a 1L DI water stock | Did overall inventory and made a 1L DI water stock | ||
</p> | </p> | ||
| Line 116: | Line 153: | ||
<p> | <p> | ||
Will and Jerry | Will and Jerry | ||
| + | <p> | ||
PCR | PCR | ||
| + | <p> | ||
Received and reconstituted MLC Parts and MLC primers. Performed PCR amplification on the MLC parts. | Received and reconstituted MLC Parts and MLC primers. Performed PCR amplification on the MLC parts. | ||
</p> | </p> | ||
| Line 122: | Line 161: | ||
<p> | <p> | ||
Will and Jerry | Will and Jerry | ||
| + | <p> | ||
Agarose Gel Electrophoresis, DNA Clean + Concentrator Prep, PCR | Agarose Gel Electrophoresis, DNA Clean + Concentrator Prep, PCR | ||
| − | Ran a gel verifying the MLC parts, concentrated the PCR-generated plasmids and nanodropped. After determining that concentrations were insufficient, ran another PCR for MLC amplification. Also conducted inventory. | + | <p> |
| + | Ran a gel verifying the MLC parts, concentrated the PCR-generated plasmids and nanodropped. After determining that concentrations were insufficient, ran another PCR for MLC amplification. Also conducted inventory. | ||
| + | <p> | ||
Connor and Sean | Connor and Sean | ||
| + | <p> | ||
DNA Clean + Concentrator Prep, Transformation | DNA Clean + Concentrator Prep, Transformation | ||
| − | Prepped the DNA and transformed BBa_J4450, which was reconstituted from plate 4 well 4b. Made a glycerol stock | + | <p> |
| + | Prepped the DNA and transformed BBa_J4450, which was reconstituted from plate 4 well 4b. Made a glycerol stock. | ||
| + | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Created ampicillin plates and reconstituted BBa_J61100 on plate 4 well b4. Transformed BBa_J61100 on the ampicillin plates. | Created ampicillin plates and reconstituted BBa_J61100 on plate 4 well b4. Transformed BBa_J61100 on the ampicillin plates. | ||
</p> | </p> | ||
| Line 134: | Line 181: | ||
<p> | <p> | ||
Connor, Sean and Elliot | Connor, Sean and Elliot | ||
| + | <p> | ||
Liquid Cultures, DNA Clean and Concentrator Prep | Liquid Cultures, DNA Clean and Concentrator Prep | ||
| + | <p> | ||
Made 2 liquid cultures of BBa_J61100 (LBAmp) and 4 liquid cultures of BBa_J4450 (LBCam). Prepped the new MLC PCR mixes and nanodropped for concentrations. | Made 2 liquid cultures of BBa_J61100 (LBAmp) and 4 liquid cultures of BBa_J4450 (LBCam). Prepped the new MLC PCR mixes and nanodropped for concentrations. | ||
</p> | </p> | ||
| Line 140: | Line 189: | ||
<p> | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped the liquid cultures of BBa_J61100 and BBa_J4450 (6 in total). Stored in the -20 degrees freezer. | Miniprepped the liquid cultures of BBa_J61100 and BBa_J4450 (6 in total). Stored in the -20 degrees freezer. | ||
</p> | </p> | ||
| Line 146: | Line 197: | ||
<p> | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
Liquid Cultures | Liquid Cultures | ||
| + | <p> | ||
Created 3 liquid cultures of BBa_J4450 (LBCam) and 6 liquid cultures of BBa_J61100 (LBAmp). | Created 3 liquid cultures of BBa_J4450 (LBCam) and 6 liquid cultures of BBa_J61100 (LBAmp). | ||
</p> | </p> | ||
| Line 152: | Line 205: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped 2 BBa_J4450 cultures and 5 BBa_J61100 cultures. Nanodropped and stored in the -20 degrees freezer. | Miniprepped 2 BBa_J4450 cultures and 5 BBa_J61100 cultures. Nanodropped and stored in the -20 degrees freezer. | ||
| + | <p> | ||
Elliot and Danny | Elliot and Danny | ||
| + | <p> | ||
3A Assembly, Agarose Gel Electrophoresis | 3A Assembly, Agarose Gel Electrophoresis | ||
| + | <p> | ||
Conducted 3A Assembly with the following components: pSB1C3 (from BBa_J4450), BBa_K1033916/BBa_E1010/BBa_K592009 (downstream component) and BBa_J61100 (upstream component). Made a 1% agarose gel with the following wells: 1: 1 kb ladder; 2: BBa_E1010 #3; 3. BBa_E1010 #2; 4. BBa_K1033916 #3; 5. BBa_K592009 #2; 6. BBa_K861171 # 3; 7. 1 kb ladder. Made another 1% agarose gel: 1: 1 kb ladder; 2: 100 bp ladder; 3. BBa_K1033916 #3; 4. BBa_K592009 #2; 5. BBa_K1033916 #1; 6. BBa_K861171 #1; 7. BBa_K861171 #2; 8. BBa_K861171 #3 | Conducted 3A Assembly with the following components: pSB1C3 (from BBa_J4450), BBa_K1033916/BBa_E1010/BBa_K592009 (downstream component) and BBa_J61100 (upstream component). Made a 1% agarose gel with the following wells: 1: 1 kb ladder; 2: BBa_E1010 #3; 3. BBa_E1010 #2; 4. BBa_K1033916 #3; 5. BBa_K592009 #2; 6. BBa_K861171 # 3; 7. 1 kb ladder. Made another 1% agarose gel: 1: 1 kb ladder; 2: 100 bp ladder; 3. BBa_K1033916 #3; 4. BBa_K592009 #2; 5. BBa_K1033916 #1; 6. BBa_K861171 #1; 7. BBa_K861171 #2; 8. BBa_K861171 #3 | ||
</p> | </p> | ||
| Line 161: | Line 219: | ||
<p> | <p> | ||
Elliot + Danny + Jerry | Elliot + Danny + Jerry | ||
| + | <p> | ||
Agarose Gel Electrophoresis | Agarose Gel Electrophoresis | ||
| + | <p> | ||
Ran a diagnostic 2% gel for the repressible. | Ran a diagnostic 2% gel for the repressible. | ||
| + | <p> | ||
Will + Jerry | Will + Jerry | ||
| + | <p> | ||
Agarose Gel Electrophoresis | Agarose Gel Electrophoresis | ||
| + | <p> | ||
Ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: 100 bp ladder; 3: BBa_K1033916 #1; 4: BBa_K1033916 #2; 5: BBa_K1033916 #3; 6: BBa_K592009 #2; 7: BBa_K861171 #1; 8: BBa_K861171 #2; 9: BBa_K861171 #3 | Ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: 100 bp ladder; 3: BBa_K1033916 #1; 4: BBa_K1033916 #2; 5: BBa_K1033916 #3; 6: BBa_K592009 #2; 7: BBa_K861171 #1; 8: BBa_K861171 #2; 9: BBa_K861171 #3 | ||
| + | <p> | ||
Connor + Will | Connor + Will | ||
| + | <p> | ||
3A Assembly, Simple Recombination | 3A Assembly, Simple Recombination | ||
| + | <p> | ||
Conducted a 3A assembly with the following components: pSB1C3, BBa_E1010/BBa_K592009, BBa_J1100. Conducted simple recombination (cutting a backbone and “part” with the same enzymes) with the following components: MLC1/2/3/4, pSB1C3. | Conducted a 3A assembly with the following components: pSB1C3, BBa_E1010/BBa_K592009, BBa_J1100. Conducted simple recombination (cutting a backbone and “part” with the same enzymes) with the following components: MLC1/2/3/4, pSB1C3. | ||
| + | <p> | ||
Will | Will | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed the two 3A plasmids and four simple recombination plasmids. | Transformed the two 3A plasmids and four simple recombination plasmids. | ||
| + | <p> | ||
*Note: all MLC plates failed to grow | *Note: all MLC plates failed to grow | ||
</p> | </p> | ||
| Line 177: | Line 247: | ||
<p> | <p> | ||
Will | Will | ||
| + | <p> | ||
PCR, Transformation | PCR, Transformation | ||
| + | <p> | ||
Conducted another PCR amplification procedure for the order MLC parts (1-4). Transformed the MLC + pSB1C3 constructs that failed to grow once more. | Conducted another PCR amplification procedure for the order MLC parts (1-4). Transformed the MLC + pSB1C3 constructs that failed to grow once more. | ||
</p> | </p> | ||
| Line 183: | Line 255: | ||
<p> | <p> | ||
Will | Will | ||
| + | <p> | ||
Agarose Gel Electrophoresis, Gel DNA Recovery Prep | Agarose Gel Electrophoresis, Gel DNA Recovery Prep | ||
| + | <p> | ||
Made glycerol stocks of BBa_K1033916#3/pSB1C3/BBa_J61100 (pink, so actually BBa_J4450), BBa_K592009#2/pSB1C3/BBa_J61100, BBa_E1010#2/pSB1C3/BBa_J61100. Then ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: 100 bp ladder; 3: MLC1: 4: MLC2; 5: MLC3; 6: MLC4; 7: MasterMix; 8: USP H20. Then ran a DNA gel recovery prep and nanodropped. | Made glycerol stocks of BBa_K1033916#3/pSB1C3/BBa_J61100 (pink, so actually BBa_J4450), BBa_K592009#2/pSB1C3/BBa_J61100, BBa_E1010#2/pSB1C3/BBa_J61100. Then ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: 100 bp ladder; 3: MLC1: 4: MLC2; 5: MLC3; 6: MLC4; 7: MasterMix; 8: USP H20. Then ran a DNA gel recovery prep and nanodropped. | ||
| − | *Note: MLC remainders from the gel were not enough, so another PCR is recommended | + | *Note: MLC remainders from the gel were not enough, so another PCR is recommended. |
| + | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Zyppy Plasmid Miniprep, Transformation | Zyppy Plasmid Miniprep, Transformation | ||
| + | <p> | ||
Miniprepped BBa_K592009/BBa_J61100/pSB1C3 and BBa_E1010/BBa_J61100/pSB1C3 liquid cultures. Nanodropped the results. Transformed the BBa_1033916 #1/#2 3A results. | Miniprepped BBa_K592009/BBa_J61100/pSB1C3 and BBa_E1010/BBa_J61100/pSB1C3 liquid cultures. Nanodropped the results. Transformed the BBa_1033916 #1/#2 3A results. | ||
| + | <p> | ||
Jerry, Danny, Elliot | Jerry, Danny, Elliot | ||
| + | <p> | ||
3A Assembly, Transformation, Agarose Gel Electrophoresis | 3A Assembly, Transformation, Agarose Gel Electrophoresis | ||
| + | <p> | ||
Conducted a 3A with the following components: BBa_J4450 (pSB1C3), BBa_J61100, BBa_K1033916 #1/2. Ran a 1% digest gel with the following specifications: 1: 1 kb ladder; 2: BBa_K1033916 #1, undigested; 3: BBa_K1033916 #1, EcoRI digested; 4: BBa_K1033916 #1, SpeI digested; 5: BBa_K1033916 #1, double digest; 6: BBa_K1033916 #2, undigested; 7: BBa_K1033916 #2, EcoRI digested; 8: BBa_K1033916 #2, SpeI digested; 9: BBa_K1033916 #2, double digest; 10: BBa_K861171 #1, undigested; 11: BBa_K861171 #1, EcoRI digested; 12: BBa_K861171 #1, SpeI digested; 13: BBa_K861171 #1, double digest; 14: 100 bp ladder. | Conducted a 3A with the following components: BBa_J4450 (pSB1C3), BBa_J61100, BBa_K1033916 #1/2. Ran a 1% digest gel with the following specifications: 1: 1 kb ladder; 2: BBa_K1033916 #1, undigested; 3: BBa_K1033916 #1, EcoRI digested; 4: BBa_K1033916 #1, SpeI digested; 5: BBa_K1033916 #1, double digest; 6: BBa_K1033916 #2, undigested; 7: BBa_K1033916 #2, EcoRI digested; 8: BBa_K1033916 #2, SpeI digested; 9: BBa_K1033916 #2, double digest; 10: BBa_K861171 #1, undigested; 11: BBa_K861171 #1, EcoRI digested; 12: BBa_K861171 #1, SpeI digested; 13: BBa_K861171 #1, double digest; 14: 100 bp ladder. | ||
</p> | </p> | ||
| Line 196: | Line 276: | ||
<p> | <p> | ||
Connor, Sean | Connor, Sean | ||
| + | <p> | ||
PCR, DNA Clean + Concentration Prep, Simple Recombination, Liquid Culture | PCR, DNA Clean + Concentration Prep, Simple Recombination, Liquid Culture | ||
| + | <p> | ||
Redid PCR amplification for MLC parts and prepped the PCR mix with the concentrator kit. Conducted the following simple recombination: pSB1C3 + MLC1/2/3/4. Made a liquid culture for the BBa_K1033916/BBa_J61100/pSB1C3 plasmid. | Redid PCR amplification for MLC parts and prepped the PCR mix with the concentrator kit. Conducted the following simple recombination: pSB1C3 + MLC1/2/3/4. Made a liquid culture for the BBa_K1033916/BBa_J61100/pSB1C3 plasmid. | ||
</p> | </p> | ||
| Line 202: | Line 284: | ||
<p> | <p> | ||
Sean | Sean | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed the simple recombination results (MLC1-4 + backbone). | Transformed the simple recombination results (MLC1-4 + backbone). | ||
</p> | </p> | ||
| Line 208: | Line 292: | ||
<p> | <p> | ||
Sean | Sean | ||
| + | <p> | ||
Transformation, Liquid Cultures | Transformation, Liquid Cultures | ||
| + | <p> | ||
Retransformed the simple recombination results due to bad colony growth. Made liquid cultures for MLC1, MLC2 (#1 and #2) and MLC 3. | Retransformed the simple recombination results due to bad colony growth. Made liquid cultures for MLC1, MLC2 (#1 and #2) and MLC 3. | ||
| + | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Agarose Gel Electrophoresis | Agarose Gel Electrophoresis | ||
| + | <p> | ||
Ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: BBa_E1010#1/BBa_J61100/pSB1C3, undigested; 3: BBa_E1010#1/BBa_J61100/pSB1C3, EcoRI digestion; 4: BBa_E1010#1/BBa_J61100/pSB1C3, SpeI digestion; 5: BBa_E1010#1/BBa_J61100/pSB1C3, double digest; 6: BBa_E1010#3/BBa_J61100/pSB1C3, undigested; 7: BBa_E1010#3/BBa_J61100/pSB1C3, EcoRI digestion; 8: BBa_E1010#3/BBa_J61100/pSB1C3, SpeI digestion; 9: BBa_E1010#3/BBa_J61100/pSB1C3, double digest; 10: 1 kb ladder. | Ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: BBa_E1010#1/BBa_J61100/pSB1C3, undigested; 3: BBa_E1010#1/BBa_J61100/pSB1C3, EcoRI digestion; 4: BBa_E1010#1/BBa_J61100/pSB1C3, SpeI digestion; 5: BBa_E1010#1/BBa_J61100/pSB1C3, double digest; 6: BBa_E1010#3/BBa_J61100/pSB1C3, undigested; 7: BBa_E1010#3/BBa_J61100/pSB1C3, EcoRI digestion; 8: BBa_E1010#3/BBa_J61100/pSB1C3, SpeI digestion; 9: BBa_E1010#3/BBa_J61100/pSB1C3, double digest; 10: 1 kb ladder. | ||
</p> | </p> | ||
| Line 217: | Line 306: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
Agarose Gel Electrophoresis | Agarose Gel Electrophoresis | ||
| + | <p> | ||
Ran a 1% gel with the following specifications: 1: 100 bp ladder; 2: MLC1; 3: MLC2; 4: MLC3; 5: MLC4; 6: MLC2#1/BBa_J61100/pSB1C3; 7: MLC2#2/BBa_J61100/pSB1C3; 8: MLC3/BBa_J61100/pSB1C3; 9: 1 kb ladder. | Ran a 1% gel with the following specifications: 1: 100 bp ladder; 2: MLC1; 3: MLC2; 4: MLC3; 5: MLC4; 6: MLC2#1/BBa_J61100/pSB1C3; 7: MLC2#2/BBa_J61100/pSB1C3; 8: MLC3/BBa_J61100/pSB1C3; 9: 1 kb ladder. | ||
</p> | </p> | ||
| Line 223: | Line 314: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
3A Assembly | 3A Assembly | ||
| + | <p> | ||
Conducted a 3A assembly with the following components: BBa_J4450 (pSB1C3), BBa_K1033916#2+BBa_J61100/BBa_K592009+BBa_J61100, BBa_K861171/ BBa_K118011. Only managed to get to the digestion step, stored for Connors’ usage tomorrow. | Conducted a 3A assembly with the following components: BBa_J4450 (pSB1C3), BBa_K1033916#2+BBa_J61100/BBa_K592009+BBa_J61100, BBa_K861171/ BBa_K118011. Only managed to get to the digestion step, stored for Connors’ usage tomorrow. | ||
Connor | Connor | ||
| + | <p> | ||
Zyppy Plasmid Miniprep | Zyppy Plasmid Miniprep | ||
| + | <p> | ||
Miniprepped the MLC1/2(1)/2(2)/3+pSB1C3 liquid cultures. Made more LB stock. | Miniprepped the MLC1/2(1)/2(2)/3+pSB1C3 liquid cultures. Made more LB stock. | ||
</p> | </p> | ||
| Line 232: | Line 327: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
3A Assembly, Zyppy Plasmid Miniprep | 3A Assembly, Zyppy Plasmid Miniprep | ||
| + | <p> | ||
Finished the ligation step of 3A assembly and stored the plasmids in the freezer. Made glycerol stocks for MLC 1/2/3 (1 is mislabeled as 4!). Miniprepped the MLC1+pSB1C3 construct and nanodropped for concentration determination. | Finished the ligation step of 3A assembly and stored the plasmids in the freezer. Made glycerol stocks for MLC 1/2/3 (1 is mislabeled as 4!). Miniprepped the MLC1+pSB1C3 construct and nanodropped for concentration determination. | ||
</p> | </p> | ||
| − | <h4 | + | <h4 style = "font-size: 24 px"> June 26th, 2015 </h> |
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p id = "July"> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p > | ||
Miniprepped 3 BBa_K1033916/BBa_J61100/pSB1C3 construct liquid cultures | Miniprepped 3 BBa_K1033916/BBa_J61100/pSB1C3 construct liquid cultures | ||
</p> | </p> | ||
| Line 244: | Line 343: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Liquid Cultures, Transformation | Liquid Cultures, Transformation | ||
| + | <p> | ||
Made liquid cultures for the BBa_1033916/BBa_J61100/pSB1C3 and the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 constructs. Also plated the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs once more. | Made liquid cultures for the BBa_1033916/BBa_J61100/pSB1C3 and the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 constructs. Also plated the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs once more. | ||
| + | <p> | ||
Connor | Connor | ||
| + | <p> | ||
3A Assembly | 3A Assembly | ||
| + | <p> | ||
Constructed a plasmid with the following components: BBa_E1010+BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3. | Constructed a plasmid with the following components: BBa_E1010+BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3. | ||
</p> | </p> | ||
| Line 253: | Line 357: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Transformation/Liquid Culture | Transformation/Liquid Culture | ||
| + | <p> | ||
Transformed the 3A assembly results from yesterday (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). Also made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. | Transformed the 3A assembly results from yesterday (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). Also made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. | ||
*NOTE: plates were overgrown during selection! | *NOTE: plates were overgrown during selection! | ||
| Line 260: | Line 366: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
3A Assembly/Transformation/Liquid Culture | 3A Assembly/Transformation/Liquid Culture | ||
| + | <p> | ||
Attempted another ligation with the backbone (BBa_J4450) and MLC4 digests. Transformed the result. Made liquid cultures of MLC composite parts (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). | Attempted another ligation with the backbone (BBa_J4450) and MLC4 digests. Transformed the result. Made liquid cultures of MLC composite parts (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). | ||
| + | <p> | ||
*Note: The MLC4 ligation culture failed to grow. | *Note: The MLC4 ligation culture failed to grow. | ||
| + | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. Nanodropped and found no DNA, so discarded. | Miniprepped the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. Nanodropped and found no DNA, so discarded. | ||
| + | <p> | ||
*Note: Liquid cultures had a cellular deposit on the bottom for some reason | *Note: Liquid cultures had a cellular deposit on the bottom for some reason | ||
</p> | </p> | ||
| Line 271: | Line 384: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic/Liquid Cultures | ZR Plasmid Miniprep Classic/Liquid Cultures | ||
| + | <p> | ||
Miniprepped the MLC Composite Parts (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). Nanodropped and stored the results. Made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs | Miniprepped the MLC Composite Parts (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). Nanodropped and stored the results. Made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs | ||
</p> | </p> | ||
| Line 277: | Line 392: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Simple Recombination/Agarose Gel Electrophoresis/Transformation | Simple Recombination/Agarose Gel Electrophoresis/Transformation | ||
| + | <p> | ||
Attempted simple recombination with MLC4 and pSB1C3. Transformed the result. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/BBa_E1010/pSB1C3 (E+P cut); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut); 5. MLC2(2)/BBa_E1010/pSB1C3 (E+P cut); 6. MLC3/BBa_E1010/pSB1C3 (E+P cut). | Attempted simple recombination with MLC4 and pSB1C3. Transformed the result. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/BBa_E1010/pSB1C3 (E+P cut); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut); 5. MLC2(2)/BBa_E1010/pSB1C3 (E+P cut); 6. MLC3/BBa_E1010/pSB1C3 (E+P cut). | ||
</p> | </p> | ||
| Line 283: | Line 400: | ||
<p> | <p> | ||
Connor and Jerry | Connor and Jerry | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic/Agarose Gel Electrophoresis | ZR Plasmid Miniprep Classic/Agarose Gel Electrophoresis | ||
| + | <p> | ||
Miniprepped liquid cultures from the red and white colonie on the MLC Composite Parts plates and the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/BBa_E1010/pSB1C3 (E+P cut) (Red); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut) (Red); 5. MLC2(2)/BBa_E1010/pSB1C (E+P cut) (Red)3; 6. BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 (E+P cut); 7. BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 (E+P cut); 8. MLC1/BBa_E1010/pSB1C3 (E+P cut) (White); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut) (White); 5. MLC2(2)/BBa_E1010/pSB1C (E+P cut) (White). | Miniprepped liquid cultures from the red and white colonie on the MLC Composite Parts plates and the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/BBa_E1010/pSB1C3 (E+P cut) (Red); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut) (Red); 5. MLC2(2)/BBa_E1010/pSB1C (E+P cut) (Red)3; 6. BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 (E+P cut); 7. BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 (E+P cut); 8. MLC1/BBa_E1010/pSB1C3 (E+P cut) (White); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut) (White); 5. MLC2(2)/BBa_E1010/pSB1C (E+P cut) (White). | ||
</p> | </p> | ||
| Line 289: | Line 408: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Liquid Cultures | Liquid Cultures | ||
| + | <p> | ||
Made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. | Made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. | ||
</p> | </p> | ||
| Line 295: | Line 416: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped the BBa_K118011, BBa_K861171, BBa_K592009, BBa_K1033916, BBa_E1010 and BBa_E1010/BBa_J61100 constructs and nanodropped. Made glycerol stocks of all. | Miniprepped the BBa_K118011, BBa_K861171, BBa_K592009, BBa_K1033916, BBa_E1010 and BBa_E1010/BBa_J61100 constructs and nanodropped. Made glycerol stocks of all. | ||
</p> | </p> | ||
| Line 301: | Line 424: | ||
<p> | <p> | ||
Connor and Jerry | Connor and Jerry | ||
| + | <p> | ||
Liquid Culture/Transformation | Liquid Culture/Transformation | ||
| + | <p> | ||
Transformed BBa_B0034 from plate 4, well 1N with 10 uL USP water. Transformed and plated with AmpR plates. Made 4 liquid cultures with 1g/L glucose concentration and the MLC Composite Parts to check for chromoprotein expression via glucose induction. | Transformed BBa_B0034 from plate 4, well 1N with 10 uL USP water. Transformed and plated with AmpR plates. Made 4 liquid cultures with 1g/L glucose concentration and the MLC Composite Parts to check for chromoprotein expression via glucose induction. | ||
</p> | </p> | ||
| Line 307: | Line 432: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Liquid Culture/Simple Recombination/Transformation | Liquid Culture/Simple Recombination/Transformation | ||
| + | <p> | ||
Made liquid cultures of BBa_B0034 and BBa_J61100. Attempted simple recombination with MLC4(1)/MLC4(2) and pSB1C3. Transformed the ligation result. | Made liquid cultures of BBa_B0034 and BBa_J61100. Attempted simple recombination with MLC4(1)/MLC4(2) and pSB1C3. Transformed the ligation result. | ||
</p> | </p> | ||
| Line 313: | Line 440: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic/Liquid Cultures | ZR Plasmid Miniprep Classic/Liquid Cultures | ||
| + | <p> | ||
Miniprepped the BBa_J61100 and BBa_B0034. Nanodropped and made a glycerol stock of both. Made liquid cultures of the MLC4(1)/pSB1C3 and MLC4(2)/pSB1C3 constructs. | Miniprepped the BBa_J61100 and BBa_B0034. Nanodropped and made a glycerol stock of both. Made liquid cultures of the MLC4(1)/pSB1C3 and MLC4(2)/pSB1C3 constructs. | ||
</p> | </p> | ||
| Line 319: | Line 448: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic/3A Assembly/Agarose Gel Electrophoresis/Transformation | ZR Plasmid Miniprep Classic/3A Assembly/Agarose Gel Electrophoresis/Transformation | ||
| + | <p> | ||
Miniprepped the MLC4(1)/pSB1C3 and MLC4(2)/pSB1C3 constructs. Conducted 3A assembly to make the following parts: BBa_K1033916/BBa_B0034; BBa_K1033916/BBa_J61100; BBa_K592009/BBa_B0034; BBa_K592009/BBa_J61100; BBa_E1010/BBa_B0034; BBa_E1010/BBa_J61100. Transformed the ligation results. Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. MLC4(1)/pSB1C3; 4. MLC4(2)/pSB1C3; 5. pSB1C3(1); 6.pSB1C3(2). | Miniprepped the MLC4(1)/pSB1C3 and MLC4(2)/pSB1C3 constructs. Conducted 3A assembly to make the following parts: BBa_K1033916/BBa_B0034; BBa_K1033916/BBa_J61100; BBa_K592009/BBa_B0034; BBa_K592009/BBa_J61100; BBa_E1010/BBa_B0034; BBa_E1010/BBa_J61100. Transformed the ligation results. Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. MLC4(1)/pSB1C3; 4. MLC4(2)/pSB1C3; 5. pSB1C3(1); 6.pSB1C3(2). | ||
</p> | </p> | ||
| Line 325: | Line 456: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
PCR | PCR | ||
| + | <p> | ||
Amplified the MLC4 fragment | Amplified the MLC4 fragment | ||
</p> | </p> | ||
| Line 331: | Line 464: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Plated BBa_K1033931, BBa_K1073023, and BBa_K1033929. | Plated BBa_K1033931, BBa_K1073023, and BBa_K1033929. | ||
</p> | </p> | ||
| Line 337: | Line 472: | ||
<p> | <p> | ||
Connor and Jerry | Connor and Jerry | ||
| + | <p> | ||
DNA Clean and Concentrator Prep | DNA Clean and Concentrator Prep | ||
| + | <p> | ||
Prepped the MLC4 PCR results and nanodropped. | Prepped the MLC4 PCR results and nanodropped. | ||
| + | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
Agarose Gel Electrophoresis/PCR | Agarose Gel Electrophoresis/PCR | ||
| + | <p> | ||
Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. MLC4; 4. BBa_K1033931; 5. BBa_E1010. Amplified the MLC1-3 fragments with PCR. | Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. MLC4; 4. BBa_K1033931; 5. BBa_E1010. Amplified the MLC1-3 fragments with PCR. | ||
</p> | </p> | ||
| Line 346: | Line 486: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
DNA Clean and Concentrator Prep/Agarose Gel Electrophoresis | DNA Clean and Concentrator Prep/Agarose Gel Electrophoresis | ||
| + | <p> | ||
Prepped the MLC1-3 PCR Results and nanodropped. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1; 4. MLC2; 5. MLC3; 6. MLC4. | Prepped the MLC1-3 PCR Results and nanodropped. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1; 4. MLC2; 5. MLC3; 6. MLC4. | ||
| + | <p> | ||
Jerry/Elliot | Jerry/Elliot | ||
| + | <p> | ||
Liquid Culture | Liquid Culture | ||
| + | <p> | ||
Made 2 liquid cultures of BBa_K1073025, BBa_K1073023 and BBa_K1073021 each. Also made liquid cultures of each of the MLC+pSB1C3 constructs. | Made 2 liquid cultures of BBa_K1073025, BBa_K1073023 and BBa_K1073021 each. Also made liquid cultures of each of the MLC+pSB1C3 constructs. | ||
</p> | </p> | ||
| Line 355: | Line 500: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic/3A Assembly | ZR Plasmid Miniprep Classic/3A Assembly | ||
| + | <p> | ||
Miniprepped BBa_K1033931, BBa_K1033929, and BBa_K1073023. Nanodropped and created the following constructs with 3A: BBa_K118011/BBa_K1073023 and BBa_K861171/BBa_K1033929. | Miniprepped BBa_K1033931, BBa_K1033929, and BBa_K1073023. Nanodropped and created the following constructs with 3A: BBa_K118011/BBa_K1073023 and BBa_K861171/BBa_K1033929. | ||
| + | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed the following constructs: BBa_K861171/BBa_K1033929; BBa_K118011/BBa_K1073023; MLC1/pSB1C3; MLC2/pSB1C3; MLC3/pSB1C3; MLC4/pSB1C3. | Transformed the following constructs: BBa_K861171/BBa_K1033929; BBa_K118011/BBa_K1073023; MLC1/pSB1C3; MLC2/pSB1C3; MLC3/pSB1C3; MLC4/pSB1C3. | ||
</p> | </p> | ||
| Line 364: | Line 514: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Liquid Culture/Agarose Gel Electrophoresis | Liquid Culture/Agarose Gel Electrophoresis | ||
| + | <p> | ||
Made liquid cultures for each of the MLC Constructs in backbones. Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. BBa_K118011/BBa_K1073023 (1) (White); 4. BBa_K118011/BBa_K1073023 (2) (White); 5. BBa_K118011/BBa_K1073023 (1) (Red); 6. BBa_K118011/BBa_K1073023 (2) (Red); 7. BBa_K861171/BBa_K1033929 (1); 8. BBa_K861171/BBa_K1033929 (2). | Made liquid cultures for each of the MLC Constructs in backbones. Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. BBa_K118011/BBa_K1073023 (1) (White); 4. BBa_K118011/BBa_K1073023 (2) (White); 5. BBa_K118011/BBa_K1073023 (1) (Red); 6. BBa_K118011/BBa_K1073023 (2) (Red); 7. BBa_K861171/BBa_K1033929 (1); 8. BBa_K861171/BBa_K1033929 (2). | ||
</p> | </p> | ||
| Line 370: | Line 522: | ||
<p> | <p> | ||
Connor/Elliot | Connor/Elliot | ||
| + | <p> | ||
Agarose Gel Electrophoresis | Agarose Gel Electrophoresis | ||
| + | <p> | ||
Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. BBa_K118011/BBa_K1073023 (1) (White) (E+P cut); 4. BBa_K118011/BBa_K1073023 (2) (White) (E+P cut); 5. BBa_K118011/BBa_K1073023 (1) (Red) (E+P cut); 6. BBa_K118011/BBa_K1073023 (2) (Red) (E+P cut); 7. BBa_K861171/BBa_K1033929 (1) (E+P cut); 8. BBa_K861171/BBa_K1033929 (2) (E+P cut). | Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. BBa_K118011/BBa_K1073023 (1) (White) (E+P cut); 4. BBa_K118011/BBa_K1073023 (2) (White) (E+P cut); 5. BBa_K118011/BBa_K1073023 (1) (Red) (E+P cut); 6. BBa_K118011/BBa_K1073023 (2) (Red) (E+P cut); 7. BBa_K861171/BBa_K1033929 (1) (E+P cut); 8. BBa_K861171/BBa_K1033929 (2) (E+P cut). | ||
</p> | </p> | ||
| Line 376: | Line 530: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
Agarose Gel Electrophoresis | Agarose Gel Electrophoresis | ||
| + | <p> | ||
Ran a 1% gel with the following specifications (all E+P cut): 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/pSB1C3 (a); 4. MLC1/pSB1C3 (b); 5. MLC1/pSB1C3 (c); 6. MLC2/pSB1C3 (b); 7. MLC2/pSB1C3 (c); 8. MLC3/pSB1C3 (b); 9. MLC4/pSB1C3 (a); 10. MLC4/pSB1C3 (b); 11. BBa_K861171/BBa_K1033929; 12. BBa_K118011/BBa_K1073023; 13. 100 bp ladder; 14. 1 kb ladder. | Ran a 1% gel with the following specifications (all E+P cut): 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/pSB1C3 (a); 4. MLC1/pSB1C3 (b); 5. MLC1/pSB1C3 (c); 6. MLC2/pSB1C3 (b); 7. MLC2/pSB1C3 (c); 8. MLC3/pSB1C3 (b); 9. MLC4/pSB1C3 (a); 10. MLC4/pSB1C3 (b); 11. BBa_K861171/BBa_K1033929; 12. BBa_K118011/BBa_K1073023; 13. 100 bp ladder; 14. 1 kb ladder. | ||
</p> | </p> | ||
| Line 382: | Line 538: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
Liquid Culture | Liquid Culture | ||
| + | <p> | ||
Made liquid cultures of BBa_K118011 and BBa_K861171. Also plated the BBa_K1073023, BBa_K1033929, and BBa_K1033931 sent from the registry. | Made liquid cultures of BBa_K118011 and BBa_K861171. Also plated the BBa_K1073023, BBa_K1033929, and BBa_K1033931 sent from the registry. | ||
| − | July 30th, 2015 | + | <p> |
| + | <h4 style = "font-size: 24 px"> July 30th, 2015</h> | ||
| + | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
| + | |||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
| + | |||
Miniprepped the BBa_K118011 and BBa_K861171 cultures. Nanodropped the result. | Miniprepped the BBa_K118011 and BBa_K861171 cultures. Nanodropped the result. | ||
</p> | </p> | ||
| − | <h4 | + | <h4 style = "font-size: 24 px"> July 31st, 2015 </h> |
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
3A Assembly/Simple Recombination/Agarose Gel Electrophoresis | 3A Assembly/Simple Recombination/Agarose Gel Electrophoresis | ||
| − | Conducted a 3A to create the following constructs: BBa_K861171/BBa_K1033929 and BBa_K118011/BBa_K1073023. Attempted to recombine the MLC fragments into the pSB1C3 backbone. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. pSB1C3 (E cut); 4. pSB1C3 (P cut); 5. pSB1C3; 6. MLC1 (E+S cut); 7. MLC2 (E+S cut); 8. MLC3 (E+S cut); 9. MLC4 (E+S cut); 10. pSB1C3 (E+S cut); 11. BBa_K1073023 (P+X cut); 12. BBa_K107029 (P+X cut); 13. BBa_K861171 (P+S cut); 14. BBa_K118011 (P+S cut). | + | <p> |
| + | |||
| + | Conducted a 3A to create the following constructs: BBa_K861171/BBa_K1033929 and BBa_K118011/BBa_K1073023. Attempted to recombine the MLC fragments into the pSB1C3 backbone. Ran a 1% gel with the following</p> <p id = "August">specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. pSB1C3 (E cut); 4. pSB1C3 (P cut); 5. pSB1C3; 6. MLC1 (E+S cut); 7. MLC2 (E+S cut); 8. MLC3 (E+S cut); 9. MLC4 (E+S cut); 10. pSB1C3 (E+S cut); 11. BBa_K1073023 (P+X cut); 12. BBa_K107029 (P+X cut); 13. BBa_K861171 (P+S cut); 14. BBa_K118011 (P+S cut). | ||
</p> | </p> | ||
| + | |||
<h4 style = "font-size: 24 px"> August 1st, 2015 </h> | <h4 style = "font-size: 24 px"> August 1st, 2015 </h> | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed all the MLC/pSB1C3 constructs with one of the BBa_K118011/BBa_K1073023 (Red) and BBa_K861171/BBa_K1033929 constructs. | Transformed all the MLC/pSB1C3 constructs with one of the BBa_K118011/BBa_K1073023 (Red) and BBa_K861171/BBa_K1033929 constructs. | ||
</p> | </p> | ||
| Line 404: | Line 574: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
Liquid Culture | Liquid Culture | ||
| + | <p> | ||
Made 2 liquid cultures each of the MLC constructs with pSB1C3, BBa_K118011/BBa_K1073023, and BBa_K861171/BBa_K1033929. | Made 2 liquid cultures each of the MLC constructs with pSB1C3, BBa_K118011/BBa_K1073023, and BBa_K861171/BBa_K1033929. | ||
</p> | </p> | ||
| Line 410: | Line 582: | ||
<p> | <p> | ||
Jerry | Jerry | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed the reconstituted BBa_J23119 (plate 3, well 17) along with two of the BBa_K118011/BBa_K1073023 constructs and one of the BBa_K861171/BBa_K1033929 constructs. | Transformed the reconstituted BBa_J23119 (plate 3, well 17) along with two of the BBa_K118011/BBa_K1073023 constructs and one of the BBa_K861171/BBa_K1033929 constructs. | ||
| + | <p> | ||
Jerry and Sean | Jerry and Sean | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Prepped the MLC+pSB1C3, BBa_K118011/BBa_K1073023, and BBa_K861171/BBa_K1033929 constructs. Nanodropped the results. | Prepped the MLC+pSB1C3, BBa_K118011/BBa_K1073023, and BBa_K861171/BBa_K1033929 constructs. Nanodropped the results. | ||
</p> | </p> | ||
| Line 419: | Line 596: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
3A Assembly/ZR Plasmid Miniprep Classic | 3A Assembly/ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Attempted a 3A to make the following constructs: MLC1/BBa_K1033931; MLC2/BBa_K1033931; MLC3/BBa_K1033931; MLC4/BBa_K1033931. Miniprepped the pSB1C3 liquid cultures and nanodropped. | Attempted a 3A to make the following constructs: MLC1/BBa_K1033931; MLC2/BBa_K1033931; MLC3/BBa_K1033931; MLC4/BBa_K1033931. Miniprepped the pSB1C3 liquid cultures and nanodropped. | ||
| + | <p> | ||
Sean | Sean | ||
| + | <p> | ||
Elongated Digestion/DNA Clean and Concentrator Prep/Elongated Ligation | Elongated Digestion/DNA Clean and Concentrator Prep/Elongated Ligation | ||
| + | <p> | ||
Digested BBa_J23119, BBa_K1033931, BBa_K1073023, and BBa_K1033929 for 2 hours. Prepped the digestion results and nanodropped. Ligated and left overnight. | Digested BBa_J23119, BBa_K1033931, BBa_K1073023, and BBa_K1033929 for 2 hours. Prepped the digestion results and nanodropped. Ligated and left overnight. | ||
| + | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed MLC1-4+pSB1C3. | Transformed MLC1-4+pSB1C3. | ||
</p> | </p> | ||
| Line 431: | Line 616: | ||
<p> | <p> | ||
Connor/Elliot | Connor/Elliot | ||
| + | <p> | ||
Liquid Culture/Transformation/Agarose Gel Electrophoresis | Liquid Culture/Transformation/Agarose Gel Electrophoresis | ||
| + | <p> | ||
Made 4 liquid cultures of the MLC/BBa_K1033931 Constructs. Transformed the constitutive promoter (BBa_J23119)+chromoprotein constructs. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. BBa_K118011/BBa_K1073023 (1); 4. BBa_K118011/BBa_K1073023 (2); 5. BBa_K861171/BBa_K1033929 (1); 6. BBa_K861171/BBa_K1033929 (2). | Made 4 liquid cultures of the MLC/BBa_K1033931 Constructs. Transformed the constitutive promoter (BBa_J23119)+chromoprotein constructs. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. BBa_K118011/BBa_K1073023 (1); 4. BBa_K118011/BBa_K1073023 (2); 5. BBa_K861171/BBa_K1033929 (1); 6. BBa_K861171/BBa_K1033929 (2). | ||
</p> | </p> | ||
| Line 437: | Line 624: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
ZR Plasmid Miniprep Classic | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
Miniprepped the MLC1-4/pSB1C3/BBa_K1033931 liquid cultures and nanodroppped. | Miniprepped the MLC1-4/pSB1C3/BBa_K1033931 liquid cultures and nanodroppped. | ||
| + | <p> | ||
Sean | Sean | ||
DNA Clean and Concentrator Prep/Elongated Ligation | DNA Clean and Concentrator Prep/Elongated Ligation | ||
| + | <p> | ||
Prepped the digestion results of BBa_K861171, BBa_K118011, BBa_K1033929, and BBa_K1073023. Ligated and left overnight. | Prepped the digestion results of BBa_K861171, BBa_K118011, BBa_K1033929, and BBa_K1073023. Ligated and left overnight. | ||
</p> | </p> | ||
| Line 446: | Line 637: | ||
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed 2 uL of reconstituted pSB1A3 from plate 4, well 2H. | Transformed 2 uL of reconstituted pSB1A3 from plate 4, well 2H. | ||
</p> | </p> | ||
| − | <h4 style = "font-size: 24 px"> August | + | <h4 style = "font-size: 24 px"> August 9th, 2015 </h> |
<p> | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Liquid Culture | Liquid Culture | ||
| + | <p> | ||
Made a liquid culture of pSB1A3. | Made a liquid culture of pSB1A3. | ||
</p> | </p> | ||
| Line 458: | Line 653: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed 2 uL of reconstituted pSB1A3 from plate 4, well 2H. | Transformed 2 uL of reconstituted pSB1A3 from plate 4, well 2H. | ||
</p> | </p> | ||
| Line 464: | Line 661: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Liquid Culture | Liquid Culture | ||
| + | <p> | ||
Made a liquid culture of pSB1A3. | Made a liquid culture of pSB1A3. | ||
</p> | </p> | ||
| Line 470: | Line 669: | ||
<p> | <p> | ||
Jerry/Sean | Jerry/Sean | ||
| + | <p> | ||
Elongated Digestion/Agarose Gel Electrophoresis | Elongated Digestion/Agarose Gel Electrophoresis | ||
| + | <p> | ||
Digested MLC+pSB1C3, BBa_K861171, and BBa_K118011 at S+P. Digested BBa_K1033929, BBa_K1073023 and BBa_K1033931 at X+P. Digested for 3 hours in total. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. BBa_K1073023; 3. BBa_K1033929; 4. BBa_K1033931; 5. BBa_K118011; 6. BBa_K861171; 7. MLC1+pSB1C3; 8. MLC2+pSB1C3; 9. MLC+pSB1C3; 10. BBa_J23119. | Digested MLC+pSB1C3, BBa_K861171, and BBa_K118011 at S+P. Digested BBa_K1033929, BBa_K1073023 and BBa_K1033931 at X+P. Digested for 3 hours in total. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. BBa_K1073023; 3. BBa_K1033929; 4. BBa_K1033931; 5. BBa_K118011; 6. BBa_K861171; 7. MLC1+pSB1C3; 8. MLC2+pSB1C3; 9. MLC+pSB1C3; 10. BBa_J23119. | ||
| + | <p> | ||
Sean | Sean | ||
| + | <p> | ||
Gel Purification Prep/Elongated Ligation | Gel Purification Prep/Elongated Ligation | ||
| + | <p> | ||
Ran the digestion results on a gel and purified. Nanodropped and made ligation mixes for 3 hour incubation. | Ran the digestion results on a gel and purified. Nanodropped and made ligation mixes for 3 hour incubation. | ||
| + | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Transformed the final ligation mixtures, including BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1033931, and MLC1-4/BBa_K1033929. | Transformed the final ligation mixtures, including BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1033931, and MLC1-4/BBa_K1033929. | ||
</p> | </p> | ||
| Line 482: | Line 689: | ||
<p> | <p> | ||
Elliot | Elliot | ||
| + | <p> | ||
Transformation | Transformation | ||
| + | <p> | ||
Retransformed the final ligation mixtures, including BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1033931, and MLC1-4/BBa_K1033929. | Retransformed the final ligation mixtures, including BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1033931, and MLC1-4/BBa_K1033929. | ||
</p> | </p> | ||
| Line 488: | Line 697: | ||
<p> | <p> | ||
Jerry and Sean | Jerry and Sean | ||
| + | <p> | ||
Elongated Digestion | Elongated Digestion | ||
| + | <p> | ||
Digested MLC+pSB1C3, BBa_K861171, and BBa_K118011 at S+P. Digested BBa_K1033929, BBa_K1073023 and BBa_K1033931 at X+P. Digested for 3 hours in total. | Digested MLC+pSB1C3, BBa_K861171, and BBa_K118011 at S+P. Digested BBa_K1033929, BBa_K1073023 and BBa_K1033931 at X+P. Digested for 3 hours in total. | ||
</p> | </p> | ||
| Line 494: | Line 705: | ||
<p> | <p> | ||
Sean | Sean | ||
| + | <p> | ||
DNA Clean and Concentrator/Gel Purification Prep/Elongated Ligation | DNA Clean and Concentrator/Gel Purification Prep/Elongated Ligation | ||
| + | <p> | ||
Prepped the promoter parts with the concentrator kit and selected for the correct chromoproteins with the gel purification prep. Ligated BBa_J23119 and BBa_K118011 with BBa_K1073023 and left for 3 hours. | Prepped the promoter parts with the concentrator kit and selected for the correct chromoproteins with the gel purification prep. Ligated BBa_J23119 and BBa_K118011 with BBa_K1073023 and left for 3 hours. | ||
| + | <p> | ||
Connor | Connor | ||
| + | <p> | ||
Transformation/Liquid Culture | Transformation/Liquid Culture | ||
| + | <p> | ||
Transformed the red chromoprotein+constitutive promoter construct and the BBa_K118011/BBa_K1073023 construct. Made liquid cultures of all of the MLC/pSB1C3 constructs, BBa_1033931, and BBa_K1033929. | Transformed the red chromoprotein+constitutive promoter construct and the BBa_K118011/BBa_K1073023 construct. Made liquid cultures of all of the MLC/pSB1C3 constructs, BBa_1033931, and BBa_K1033929. | ||
</p> | </p> | ||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 19th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic/Liquid Culture | ||
| + | <p> | ||
| + | Miniprepped BBa_J23119 and BBa_K1073023. Made liquid cultures of BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119. | ||
| + | </p> | ||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 20th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
| + | Miniprepped BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119 and nanodropped for concentration. | ||
| + | </p> | ||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 21st, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Elongated Digestion/Gel Purification Prep/Elongated Ligation | ||
| + | <p> | ||
| + | Digested 2500 ng of BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119 each for 3 hours. Ran on a 1% gel and purified with the kit. Ligated overnight. | ||
| + | </p> | ||
| − | . </p> | + | <p> |
| + | <h4 style = "font-size: 24 px"> August 22nd, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Transformation | ||
| + | <p> | ||
| + | Transformed the ligation mixes of BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119. Incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 26th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep | ||
| + | <p> | ||
| + | Miniprepped BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1073023, and the MLC2 construct/BBa_K1033931. | ||
| + | <p> | ||
| + | Jerry | ||
| + | <p> | ||
| + | PCR | ||
| + | <p> | ||
| + | Amplified the PCR Constructs with a 32 cycle PCR. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 27th, 2015 </h> | ||
| + | <p> | ||
| + | Sean | ||
| + | <p> | ||
| + | PCR | ||
| + | <p> | ||
| + | Amplified the PCR Constructs with a 35 cycle PCR and left overnight in the freezer. | ||
| + | <p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 28th, 2015 </h> | ||
| + | <p> | ||
| + | Sean and Jerry | ||
| + | <p> | ||
| + | DNA Clean and Concentrate Prep/Elongated Digestion | ||
| + | <p> | ||
| + | Cleaned the completed PCR solutions with the prep. Nanodropped for concentrations. Digested the PCR constructs with pSB1C3 and incubated for three hours. | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | DNA Clean and Concentrator Prep/Ligation | ||
| + | <p> | ||
| + | Prepped the digested PCR constructs and ligated into the digested pSB1C3 backbone. Incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 29th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Transformation | ||
| + | <p> | ||
| + | Transformed the ligated PCR+pSB1C3 constructs. Incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 30th, 2015 </h> | ||
| + | <p> | ||
| + | Elliot | ||
| + | <p> | ||
| + | Transformation | ||
| + | <p> | ||
| + | Transformed pSB1C3 stocks and plated. Incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> August 31st, 2015 </h> | ||
| + | <p><p id ="September"> | ||
| + | Connor | ||
| + | <p> | ||
| + | PCR/DNA Clean and Concentrator Kit/Elongated Digestion/Elongated Ligation | ||
| + | <p> | ||
| + | Conducted a 32 cycle PCR amplification of the PCR constructs. Cleaned with the kit and nanodropped. The results </p> <p id = "September">were then digested with miniprepped pSB1C3 and cleaned again after a 2 hour incubation. The PCR constructs were then ligated with the digested pSB1C3 and incubated overnight. | ||
| + | </p > | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 1st, 2015 </h> | ||
| + | <p> | ||
| + | Jerry | ||
| + | <p> | ||
| + | Transformation/PCR | ||
| + | <p> | ||
| + | Transformed the PCR Construct ligation mixes and incubated overnight. Set a 32 cycle PCR to amplify more of the base PCR constructs. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 2nd, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Liquid Culture | ||
| + | <p> | ||
| + | Made liquid cultures of the MLC/BBa_K1033931 PCR constructs, the BBa_J23119/BBa_K1073023 PCR construct, the BBa_K861171/BBa_K1073023 PCR construct, the BBa_K118011/BBa_K1033929 PCR construct and the tripart constructs. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 3rd, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
| + | Miniprepped the MLC/BBa_K1033931 PCR constructs, the BBa_J23119/BBa_K1073023 PCR construct, the BBa_K861171/BBa_K1073023 PCR construct, the BBa_K118011/BBa_K1033929 PCR construct and the tripart constructs. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 4th, 2015 </h> | ||
| + | <p> | ||
| + | Jerry | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
| + | Miniprepped the viable PCR Construct liquid cultures and nanodropped. | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | PCR/DNA Clean and Concentrator Kit/Elongated DIgestion/Elongated Ligation | ||
| + | <p> | ||
| + | Conducted a 32 cycle PCR amplification of the PCR constructs. Cleaned with the kit and nanodropped. The results were then digested with miniprepped pSB1C3 and cleaned again after a 2 hour incubation. The PCR constructs were then ligated with the digested pSB1C3 and incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 5th, 2015 </h> | ||
| + | <p> | ||
| + | Will | ||
| + | <p> | ||
| + | DNA Clean and Concentrator Prep/Elongated Ligation | ||
| + | <p> | ||
| + | Prepped the BBa_J23119/BBa_K1033931 and BBa_J23119/BBa_K1033929 PCR constructs. Ligated with digested pSB1C3 and incubated overnight. | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Transformation | ||
| + | <p> | ||
| + | Transformed the ligated PCR constructs+pSB1C3. Incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 6th, 2015 </h> | ||
| + | <p> | ||
| + | Elliot | ||
| + | <p> | ||
| + | Liquid Cultures/Transformation | ||
| + | <p> | ||
| + | Created liquid cultures of the viable PCR constructs and transformed the BBa_J23119/BBa_K1033931 and BBa_J23119/BBa_K1033929 PCR constructs. Incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 7th, 2015 </h> | ||
| + | <p> | ||
| + | Elliot | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
| + | Miniprepped the liquid cultures of the viable PCR constructs. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 8th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | PCR/Transformation | ||
| + | <p> | ||
| + | Transformed the the ligated PCR constructs+pSB1C3. Incubated overnight. Also ran a 32 cycle PCR amplification of the BBa_J23119/BBa_K1033931 and BBa_J23119/BBa_K1033929 PCR constructs. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 10th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic/PCR/Liquid Cultures/DNa Clean and Concentrator Prep | ||
| + | <p> | ||
| + | Miniprepped the three MLC PCR Constructs. Amplified the BBa_J23119/BBa_K1033931, BBa_J23119/BBa_K1033929, BBa_J23119/BBa_K1073023, BBa_K861171/BBa_K1073023, MLC1/BBa_K1033931, and Tripart PCR constructs with a 32 cycle PCR. Made liquid cultures of pSB1C3 and BBa_B0034 and used the clean kit to prep the PCR products. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 11th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic/Elongated Ligation/Elongated Digestion/Transformation | ||
| + | <p> | ||
| + | Miniprepped the pSB1C3 and BBa_B0034 cultures. Digested the PCR constructs, pSB1C3 and BBa_B0034 stocks and incubated for two hours. Ligated the PCR constructs together with the backbones and incubated for 3 hours. Transformed and incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 12th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Liquid Cultures | ||
| + | <p> | ||
| + | Prepared liquid cultures of the BBa_J23119/BBa_K1073023, BBa_J23119/BBa_K1033929, and BBa_K118011/BBa_K1033929 PCR constructs. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 13th, 2015 </h> | ||
| + | <p> | ||
| + | Jerry | ||
| + | <p> | ||
| + | Characterized the sensitivity parts by varying the amount of glucose concentrations in liquid cultures and monitoring their growth and changes in absorbance over time and with based on glucose concentrations. | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | ZR Plasmid Miniprep Classic | ||
| + | <p> | ||
| + | Miniprepped pSB1C3 liquid cultures and the BBa_K861171/BBa_K1073023 stocks. Nanodropped and stored. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 14th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Elongated Digestion/Elongated Ligation/Transformation | ||
| + | <p> | ||
| + | Digested three pSB1C3 stocks and one BBa_B0034 stock along with 500 ng of purified PCR constructs. Incubated for three hours. Ligated together to insert the constructs into the backbone and incubated for 3 hours. Transformed and incubated overnight. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | <h4 style = "font-size: 24 px"> September 15th, 2015 </h> | ||
| + | <p> | ||
| + | Connor | ||
| + | <p> | ||
| + | Liquid Culture | ||
| + | <p> | ||
| + | Made liquid cultures of all of the viable PCR constructs, excluding the MLC1 construct and the full constructs. | ||
| + | </p> | ||
| + | |||
| + | |||
| + | |||
| + | </p> | ||
</td> | </td> | ||
Latest revision as of 03:17, 19 September 2015
| NOTEBOOK | ||||
| May | June | July | August | September |
Notebook
FormatMonth Day, Year Name(s) of people who completed work Protocol(s) used More detailed description May 18th, 2015Connor and Sean Transformation Resuspended parts BBa_E1010 and BBa_I716120 on plate 3 well 11n and plate 3 well 11m, respectively. Transformed both and placed in 37 degree incubator *Note: parts left in 37 degree incubator too long (>24 hours) and overgrew May 21st, 2015May 21st, 2015 Elliot and Danny Transformation Resuspended part BBa_K118011 on plate 3 well 20c. Transformed this part along with BBa_E1010 again. June 3rd, 2015Connor and Sean Transformation Resuspended parts BBa_K1033916 and BBa_K592009 on plate 4 well 6m and plate 1 well 15e, respectively. Transformed those parts and BBa_E1010. *Note: BBa_K1033916 plate was thrown out due to suspicion of LBKanR mislabeling and the two other chromoproteins appear to have been switched. Elliot and Danny Transformation Transformed parts BBa_E1010, BBa_K1033916, BBa_K592009, BBa_K861171 and BBa_K118011. Will and Jerry ZR Plasmid Miniprep Classic Miniprepped parts BBa_K861171 and BBa_K118011. Prepared 1x TAE Buffer from stock. June 4th, 2015Will Transformation Did overall inventory and plated BBa_K861171 Connor and Sean Liquid Cultures Created liquid cultures of BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and placed in 37 degree shaking incubator overnight. *Note: Liquid cultures spent >24 hours in 37 degree incubator, so thrown out. Also, BBa_K118011 failed to grow. June 5th, 2015Elliot and Danny Liquid Cultures Created liquid cultures of BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and placed in 37 degree shaking incubator overnight. LB was autoclaved and placed in 4 degree fridge. June 6th, 2015Elliot and Danny ZR Plasmid Miniprep Classic Miniprepped BBa_E1010 (2), BBa_K592009 (2), and BBa_K1033916 and nanodropped for concentrations. June 8th, 2015Will Did overall inventory and made a 1L DI water stock June 10th, 2015Will and Jerry PCR Received and reconstituted MLC Parts and MLC primers. Performed PCR amplification on the MLC parts. June 11th, 2015Will and Jerry Agarose Gel Electrophoresis, DNA Clean + Concentrator Prep, PCR Ran a gel verifying the MLC parts, concentrated the PCR-generated plasmids and nanodropped. After determining that concentrations were insufficient, ran another PCR for MLC amplification. Also conducted inventory. Connor and Sean DNA Clean + Concentrator Prep, Transformation Prepped the DNA and transformed BBa_J4450, which was reconstituted from plate 4 well 4b. Made a glycerol stock. Elliot and Danny Transformation Created ampicillin plates and reconstituted BBa_J61100 on plate 4 well b4. Transformed BBa_J61100 on the ampicillin plates. June 12th, 2015Connor, Sean and Elliot Liquid Cultures, DNA Clean and Concentrator Prep Made 2 liquid cultures of BBa_J61100 (LBAmp) and 4 liquid cultures of BBa_J4450 (LBCam). Prepped the new MLC PCR mixes and nanodropped for concentrations. June 13th, 2015Elliot and Danny ZR Plasmid Miniprep Classic Miniprepped the liquid cultures of BBa_J61100 and BBa_J4450 (6 in total). Stored in the -20 degrees freezer. June 14th, 2015Elliot and Danny Liquid Cultures Created 3 liquid cultures of BBa_J4450 (LBCam) and 6 liquid cultures of BBa_J61100 (LBAmp). June 15th, 2015Connor ZR Plasmid Miniprep Classic Miniprepped 2 BBa_J4450 cultures and 5 BBa_J61100 cultures. Nanodropped and stored in the -20 degrees freezer. Elliot and Danny 3A Assembly, Agarose Gel Electrophoresis Conducted 3A Assembly with the following components: pSB1C3 (from BBa_J4450), BBa_K1033916/BBa_E1010/BBa_K592009 (downstream component) and BBa_J61100 (upstream component). Made a 1% agarose gel with the following wells: 1: 1 kb ladder; 2: BBa_E1010 #3; 3. BBa_E1010 #2; 4. BBa_K1033916 #3; 5. BBa_K592009 #2; 6. BBa_K861171 # 3; 7. 1 kb ladder. Made another 1% agarose gel: 1: 1 kb ladder; 2: 100 bp ladder; 3. BBa_K1033916 #3; 4. BBa_K592009 #2; 5. BBa_K1033916 #1; 6. BBa_K861171 #1; 7. BBa_K861171 #2; 8. BBa_K861171 #3 June 16th, 2015Elliot + Danny + Jerry Agarose Gel Electrophoresis Ran a diagnostic 2% gel for the repressible. Will + Jerry Agarose Gel Electrophoresis Ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: 100 bp ladder; 3: BBa_K1033916 #1; 4: BBa_K1033916 #2; 5: BBa_K1033916 #3; 6: BBa_K592009 #2; 7: BBa_K861171 #1; 8: BBa_K861171 #2; 9: BBa_K861171 #3 Connor + Will 3A Assembly, Simple Recombination Conducted a 3A assembly with the following components: pSB1C3, BBa_E1010/BBa_K592009, BBa_J1100. Conducted simple recombination (cutting a backbone and “part” with the same enzymes) with the following components: MLC1/2/3/4, pSB1C3. Will Transformation Transformed the two 3A plasmids and four simple recombination plasmids. *Note: all MLC plates failed to grow June 17th, 2015Will PCR, Transformation Conducted another PCR amplification procedure for the order MLC parts (1-4). Transformed the MLC + pSB1C3 constructs that failed to grow once more. June 18th, 2015Will Agarose Gel Electrophoresis, Gel DNA Recovery Prep Made glycerol stocks of BBa_K1033916#3/pSB1C3/BBa_J61100 (pink, so actually BBa_J4450), BBa_K592009#2/pSB1C3/BBa_J61100, BBa_E1010#2/pSB1C3/BBa_J61100. Then ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: 100 bp ladder; 3: MLC1: 4: MLC2; 5: MLC3; 6: MLC4; 7: MasterMix; 8: USP H20. Then ran a DNA gel recovery prep and nanodropped. *Note: MLC remainders from the gel were not enough, so another PCR is recommended. Connor Zyppy Plasmid Miniprep, Transformation Miniprepped BBa_K592009/BBa_J61100/pSB1C3 and BBa_E1010/BBa_J61100/pSB1C3 liquid cultures. Nanodropped the results. Transformed the BBa_1033916 #1/#2 3A results. Jerry, Danny, Elliot 3A Assembly, Transformation, Agarose Gel Electrophoresis Conducted a 3A with the following components: BBa_J4450 (pSB1C3), BBa_J61100, BBa_K1033916 #1/2. Ran a 1% digest gel with the following specifications: 1: 1 kb ladder; 2: BBa_K1033916 #1, undigested; 3: BBa_K1033916 #1, EcoRI digested; 4: BBa_K1033916 #1, SpeI digested; 5: BBa_K1033916 #1, double digest; 6: BBa_K1033916 #2, undigested; 7: BBa_K1033916 #2, EcoRI digested; 8: BBa_K1033916 #2, SpeI digested; 9: BBa_K1033916 #2, double digest; 10: BBa_K861171 #1, undigested; 11: BBa_K861171 #1, EcoRI digested; 12: BBa_K861171 #1, SpeI digested; 13: BBa_K861171 #1, double digest; 14: 100 bp ladder. June 19th, 2015Connor, Sean PCR, DNA Clean + Concentration Prep, Simple Recombination, Liquid Culture Redid PCR amplification for MLC parts and prepped the PCR mix with the concentrator kit. Conducted the following simple recombination: pSB1C3 + MLC1/2/3/4. Made a liquid culture for the BBa_K1033916/BBa_J61100/pSB1C3 plasmid. June 20th, 2015Sean Transformation Transformed the simple recombination results (MLC1-4 + backbone). June 21th, 2015Sean Transformation, Liquid Cultures Retransformed the simple recombination results due to bad colony growth. Made liquid cultures for MLC1, MLC2 (#1 and #2) and MLC 3. Elliot Agarose Gel Electrophoresis Ran a 1% gel with the following specifications: 1: 1 kb ladder; 2: BBa_E1010#1/BBa_J61100/pSB1C3, undigested; 3: BBa_E1010#1/BBa_J61100/pSB1C3, EcoRI digestion; 4: BBa_E1010#1/BBa_J61100/pSB1C3, SpeI digestion; 5: BBa_E1010#1/BBa_J61100/pSB1C3, double digest; 6: BBa_E1010#3/BBa_J61100/pSB1C3, undigested; 7: BBa_E1010#3/BBa_J61100/pSB1C3, EcoRI digestion; 8: BBa_E1010#3/BBa_J61100/pSB1C3, SpeI digestion; 9: BBa_E1010#3/BBa_J61100/pSB1C3, double digest; 10: 1 kb ladder. June 22nd, 2015Jerry Agarose Gel Electrophoresis Ran a 1% gel with the following specifications: 1: 100 bp ladder; 2: MLC1; 3: MLC2; 4: MLC3; 5: MLC4; 6: MLC2#1/BBa_J61100/pSB1C3; 7: MLC2#2/BBa_J61100/pSB1C3; 8: MLC3/BBa_J61100/pSB1C3; 9: 1 kb ladder. June 23rd, 2015Jerry 3A Assembly Conducted a 3A assembly with the following components: BBa_J4450 (pSB1C3), BBa_K1033916#2+BBa_J61100/BBa_K592009+BBa_J61100, BBa_K861171/ BBa_K118011. Only managed to get to the digestion step, stored for Connors’ usage tomorrow. Connor Zyppy Plasmid Miniprep Miniprepped the MLC1/2(1)/2(2)/3+pSB1C3 liquid cultures. Made more LB stock. June 24th, 2015Connor 3A Assembly, Zyppy Plasmid Miniprep Finished the ligation step of 3A assembly and stored the plasmids in the freezer. Made glycerol stocks for MLC 1/2/3 (1 is mislabeled as 4!). Miniprepped the MLC1+pSB1C3 construct and nanodropped for concentration determination. June 26th, 2015Elliot ZR Plasmid Miniprep Classic Miniprepped 3 BBa_K1033916/BBa_J61100/pSB1C3 construct liquid cultures July 1st, 2015Elliot Liquid Cultures, Transformation Made liquid cultures for the BBa_1033916/BBa_J61100/pSB1C3 and the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 constructs. Also plated the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs once more. Connor 3A Assembly Constructed a plasmid with the following components: BBa_E1010+BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3. July 2nd, 2015Connor Transformation/Liquid Culture Transformed the 3A assembly results from yesterday (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). Also made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. *NOTE: plates were overgrown during selection! July 3rd, 2015Connor 3A Assembly/Transformation/Liquid Culture Attempted another ligation with the backbone (BBa_J4450) and MLC4 digests. Transformed the result. Made liquid cultures of MLC composite parts (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). *Note: The MLC4 ligation culture failed to grow. Elliot ZR Plasmid Miniprep Classic Miniprepped the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. Nanodropped and found no DNA, so discarded. *Note: Liquid cultures had a cellular deposit on the bottom for some reason July 4th, 2015Connor ZR Plasmid Miniprep Classic/Liquid Cultures Miniprepped the MLC Composite Parts (BBa_E1010/BBa_J61100 + BBa_K4450 + MLC1/2(1)/2(2)/3). Nanodropped and stored the results. Made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs July 6th, 2015Connor Simple Recombination/Agarose Gel Electrophoresis/Transformation Attempted simple recombination with MLC4 and pSB1C3. Transformed the result. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/BBa_E1010/pSB1C3 (E+P cut); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut); 5. MLC2(2)/BBa_E1010/pSB1C3 (E+P cut); 6. MLC3/BBa_E1010/pSB1C3 (E+P cut). July 7th, 2015Connor and Jerry ZR Plasmid Miniprep Classic/Agarose Gel Electrophoresis Miniprepped liquid cultures from the red and white colonie on the MLC Composite Parts plates and the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/BBa_E1010/pSB1C3 (E+P cut) (Red); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut) (Red); 5. MLC2(2)/BBa_E1010/pSB1C (E+P cut) (Red)3; 6. BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 (E+P cut); 7. BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 (E+P cut); 8. MLC1/BBa_E1010/pSB1C3 (E+P cut) (White); 4. MLC2(1)/BBa_E1010/pSB1C3 (E+P cut) (White); 5. MLC2(2)/BBa_E1010/pSB1C (E+P cut) (White). July 8th, 2015Connor Liquid Cultures Made liquid cultures of the BBa_K118011/BBa_K592009+BBa_J61100/pSB1C3 and BBa_K861171/BBa_1033916+BBa_J61100/pSB1C3 constructs. July 9th, 2015Connor ZR Plasmid Miniprep Classic Miniprepped the BBa_K118011, BBa_K861171, BBa_K592009, BBa_K1033916, BBa_E1010 and BBa_E1010/BBa_J61100 constructs and nanodropped. Made glycerol stocks of all. July 10th, 2015Connor and Jerry Liquid Culture/Transformation Transformed BBa_B0034 from plate 4, well 1N with 10 uL USP water. Transformed and plated with AmpR plates. Made 4 liquid cultures with 1g/L glucose concentration and the MLC Composite Parts to check for chromoprotein expression via glucose induction. July 11th, 2015Connor Liquid Culture/Simple Recombination/Transformation Made liquid cultures of BBa_B0034 and BBa_J61100. Attempted simple recombination with MLC4(1)/MLC4(2) and pSB1C3. Transformed the ligation result. July 12th, 2015Connor ZR Plasmid Miniprep Classic/Liquid Cultures Miniprepped the BBa_J61100 and BBa_B0034. Nanodropped and made a glycerol stock of both. Made liquid cultures of the MLC4(1)/pSB1C3 and MLC4(2)/pSB1C3 constructs. July 13th, 2015Connor ZR Plasmid Miniprep Classic/3A Assembly/Agarose Gel Electrophoresis/Transformation Miniprepped the MLC4(1)/pSB1C3 and MLC4(2)/pSB1C3 constructs. Conducted 3A assembly to make the following parts: BBa_K1033916/BBa_B0034; BBa_K1033916/BBa_J61100; BBa_K592009/BBa_B0034; BBa_K592009/BBa_J61100; BBa_E1010/BBa_B0034; BBa_E1010/BBa_J61100. Transformed the ligation results. Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. MLC4(1)/pSB1C3; 4. MLC4(2)/pSB1C3; 5. pSB1C3(1); 6.pSB1C3(2). July 14th, 2015Jerry PCR Amplified the MLC4 fragment July 15th, 2015Elliot Transformation Plated BBa_K1033931, BBa_K1073023, and BBa_K1033929. July 16th, 2015Connor and Jerry DNA Clean and Concentrator Prep Prepped the MLC4 PCR results and nanodropped. Jerry Agarose Gel Electrophoresis/PCR Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. MLC4; 4. BBa_K1033931; 5. BBa_E1010. Amplified the MLC1-3 fragments with PCR. July 17th, 2015Connor DNA Clean and Concentrator Prep/Agarose Gel Electrophoresis Prepped the MLC1-3 PCR Results and nanodropped. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1; 4. MLC2; 5. MLC3; 6. MLC4. Jerry/Elliot Liquid Culture Made 2 liquid cultures of BBa_K1073025, BBa_K1073023 and BBa_K1073021 each. Also made liquid cultures of each of the MLC+pSB1C3 constructs. July 18th, 2015Elliot ZR Plasmid Miniprep Classic/3A Assembly Miniprepped BBa_K1033931, BBa_K1033929, and BBa_K1073023. Nanodropped and created the following constructs with 3A: BBa_K118011/BBa_K1073023 and BBa_K861171/BBa_K1033929. Connor Transformation Transformed the following constructs: BBa_K861171/BBa_K1033929; BBa_K118011/BBa_K1073023; MLC1/pSB1C3; MLC2/pSB1C3; MLC3/pSB1C3; MLC4/pSB1C3. July 20th, 2015Connor Liquid Culture/Agarose Gel Electrophoresis Made liquid cultures for each of the MLC Constructs in backbones. Ran a 1% gel with the following specifications: 1. 100 bp ladder; 2. 1 kb ladder; 3. BBa_K118011/BBa_K1073023 (1) (White); 4. BBa_K118011/BBa_K1073023 (2) (White); 5. BBa_K118011/BBa_K1073023 (1) (Red); 6. BBa_K118011/BBa_K1073023 (2) (Red); 7. BBa_K861171/BBa_K1033929 (1); 8. BBa_K861171/BBa_K1033929 (2). July 21st, 2015Connor/Elliot Agarose Gel Electrophoresis Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. BBa_K118011/BBa_K1073023 (1) (White) (E+P cut); 4. BBa_K118011/BBa_K1073023 (2) (White) (E+P cut); 5. BBa_K118011/BBa_K1073023 (1) (Red) (E+P cut); 6. BBa_K118011/BBa_K1073023 (2) (Red) (E+P cut); 7. BBa_K861171/BBa_K1033929 (1) (E+P cut); 8. BBa_K861171/BBa_K1033929 (2) (E+P cut). July 23rd, 2015Jerry Agarose Gel Electrophoresis Ran a 1% gel with the following specifications (all E+P cut): 1. 1 kb ladder; 2. 100 bp ladder; 3. MLC1/pSB1C3 (a); 4. MLC1/pSB1C3 (b); 5. MLC1/pSB1C3 (c); 6. MLC2/pSB1C3 (b); 7. MLC2/pSB1C3 (c); 8. MLC3/pSB1C3 (b); 9. MLC4/pSB1C3 (a); 10. MLC4/pSB1C3 (b); 11. BBa_K861171/BBa_K1033929; 12. BBa_K118011/BBa_K1073023; 13. 100 bp ladder; 14. 1 kb ladder. July 29th, 2015Jerry Liquid Culture Made liquid cultures of BBa_K118011 and BBa_K861171. Also plated the BBa_K1073023, BBa_K1033929, and BBa_K1033931 sent from the registry.
July 30th, 2015Jerry ZR Plasmid Miniprep Classic Miniprepped the BBa_K118011 and BBa_K861171 cultures. Nanodropped the result. July 31st, 2015Jerry 3A Assembly/Simple Recombination/Agarose Gel Electrophoresis Conducted a 3A to create the following constructs: BBa_K861171/BBa_K1033929 and BBa_K118011/BBa_K1073023. Attempted to recombine the MLC fragments into the pSB1C3 backbone. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. pSB1C3 (E cut); 4. pSB1C3 (P cut); 5. pSB1C3; 6. MLC1 (E+S cut); 7. MLC2 (E+S cut); 8. MLC3 (E+S cut); 9. MLC4 (E+S cut); 10. pSB1C3 (E+S cut); 11. BBa_K1073023 (P+X cut); 12. BBa_K107029 (P+X cut); 13. BBa_K861171 (P+S cut); 14. BBa_K118011 (P+S cut). August 1st, 2015Connor Transformation Transformed all the MLC/pSB1C3 constructs with one of the BBa_K118011/BBa_K1073023 (Red) and BBa_K861171/BBa_K1033929 constructs. August 2nd, 2015Jerry Liquid Culture Made 2 liquid cultures each of the MLC constructs with pSB1C3, BBa_K118011/BBa_K1073023, and BBa_K861171/BBa_K1033929. August 3rd, 2015Jerry Transformation Transformed the reconstituted BBa_J23119 (plate 3, well 17) along with two of the BBa_K118011/BBa_K1073023 constructs and one of the BBa_K861171/BBa_K1033929 constructs. Jerry and Sean ZR Plasmid Miniprep Classic Prepped the MLC+pSB1C3, BBa_K118011/BBa_K1073023, and BBa_K861171/BBa_K1033929 constructs. Nanodropped the results. August 4th, 2015Connor 3A Assembly/ZR Plasmid Miniprep Classic Attempted a 3A to make the following constructs: MLC1/BBa_K1033931; MLC2/BBa_K1033931; MLC3/BBa_K1033931; MLC4/BBa_K1033931. Miniprepped the pSB1C3 liquid cultures and nanodropped. Sean Elongated Digestion/DNA Clean and Concentrator Prep/Elongated Ligation Digested BBa_J23119, BBa_K1033931, BBa_K1073023, and BBa_K1033929 for 2 hours. Prepped the digestion results and nanodropped. Ligated and left overnight. Elliot Transformation Transformed MLC1-4+pSB1C3. August 5th, 2015Connor/Elliot Liquid Culture/Transformation/Agarose Gel Electrophoresis Made 4 liquid cultures of the MLC/BBa_K1033931 Constructs. Transformed the constitutive promoter (BBa_J23119)+chromoprotein constructs. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. 100 bp ladder; 3. BBa_K118011/BBa_K1073023 (1); 4. BBa_K118011/BBa_K1073023 (2); 5. BBa_K861171/BBa_K1033929 (1); 6. BBa_K861171/BBa_K1033929 (2). August 6th, 2015Elliot ZR Plasmid Miniprep Classic Miniprepped the MLC1-4/pSB1C3/BBa_K1033931 liquid cultures and nanodroppped. Sean DNA Clean and Concentrator Prep/Elongated Ligation Prepped the digestion results of BBa_K861171, BBa_K118011, BBa_K1033929, and BBa_K1073023. Ligated and left overnight. August 7th, 2015Connor Transformation Transformed 2 uL of reconstituted pSB1A3 from plate 4, well 2H. August 9th, 2015Connor Liquid Culture Made a liquid culture of pSB1A3. August 10th, 2015Elliot Transformation Transformed 2 uL of reconstituted pSB1A3 from plate 4, well 2H. August 11th, 2015Elliot Liquid Culture Made a liquid culture of pSB1A3. August 12th, 2015Jerry/Sean Elongated Digestion/Agarose Gel Electrophoresis Digested MLC+pSB1C3, BBa_K861171, and BBa_K118011 at S+P. Digested BBa_K1033929, BBa_K1073023 and BBa_K1033931 at X+P. Digested for 3 hours in total. Ran a 1% gel with the following specifications: 1. 1 kb ladder; 2. BBa_K1073023; 3. BBa_K1033929; 4. BBa_K1033931; 5. BBa_K118011; 6. BBa_K861171; 7. MLC1+pSB1C3; 8. MLC2+pSB1C3; 9. MLC+pSB1C3; 10. BBa_J23119. Sean Gel Purification Prep/Elongated Ligation Ran the digestion results on a gel and purified. Nanodropped and made ligation mixes for 3 hour incubation. Elliot Transformation Transformed the final ligation mixtures, including BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1033931, and MLC1-4/BBa_K1033929. August 13th, 2015Elliot Transformation Retransformed the final ligation mixtures, including BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1033931, and MLC1-4/BBa_K1033929. August 14th, 2015Jerry and Sean Elongated Digestion Digested MLC+pSB1C3, BBa_K861171, and BBa_K118011 at S+P. Digested BBa_K1033929, BBa_K1073023 and BBa_K1033931 at X+P. Digested for 3 hours in total. August 18th, 2015Sean DNA Clean and Concentrator/Gel Purification Prep/Elongated Ligation Prepped the promoter parts with the concentrator kit and selected for the correct chromoproteins with the gel purification prep. Ligated BBa_J23119 and BBa_K118011 with BBa_K1073023 and left for 3 hours. Connor Transformation/Liquid Culture Transformed the red chromoprotein+constitutive promoter construct and the BBa_K118011/BBa_K1073023 construct. Made liquid cultures of all of the MLC/pSB1C3 constructs, BBa_1033931, and BBa_K1033929.
August 19th, 2015Connor ZR Plasmid Miniprep Classic/Liquid Culture Miniprepped BBa_J23119 and BBa_K1073023. Made liquid cultures of BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119.
August 20th, 2015Connor ZR Plasmid Miniprep Classic Miniprepped BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119 and nanodropped for concentration.
August 21st, 2015Connor Elongated Digestion/Gel Purification Prep/Elongated Ligation Digested 2500 ng of BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119 each for 3 hours. Ran on a 1% gel and purified with the kit. Ligated overnight.
August 22nd, 2015Connor Transformation Transformed the ligation mixes of BBa_K118011, BBa_K861171, BBa_K1073023, BBa_K1033931, BBa_K1033929, the MLC1-4+pSB1C3 constructs and BBa_J23119. Incubated overnight.
August 26th, 2015Connor ZR Plasmid Miniprep Miniprepped BBa_K118011/BBa_K1073023, BBa_K861171/BBa_K1073023, and the MLC2 construct/BBa_K1033931. Jerry PCR Amplified the PCR Constructs with a 32 cycle PCR.
August 27th, 2015Sean PCR Amplified the PCR Constructs with a 35 cycle PCR and left overnight in the freezer.
August 28th, 2015Sean and Jerry DNA Clean and Concentrate Prep/Elongated Digestion Cleaned the completed PCR solutions with the prep. Nanodropped for concentrations. Digested the PCR constructs with pSB1C3 and incubated for three hours. Connor DNA Clean and Concentrator Prep/Ligation Prepped the digested PCR constructs and ligated into the digested pSB1C3 backbone. Incubated overnight.
August 29th, 2015Connor Transformation Transformed the ligated PCR+pSB1C3 constructs. Incubated overnight.
August 30th, 2015Elliot Transformation Transformed pSB1C3 stocks and plated. Incubated overnight.
August 31st, 2015Connor PCR/DNA Clean and Concentrator Kit/Elongated Digestion/Elongated Ligation Conducted a 32 cycle PCR amplification of the PCR constructs. Cleaned with the kit and nanodropped. The results were then digested with miniprepped pSB1C3 and cleaned again after a 2 hour incubation. The PCR constructs were then ligated with the digested pSB1C3 and incubated overnight.
September 1st, 2015Jerry Transformation/PCR Transformed the PCR Construct ligation mixes and incubated overnight. Set a 32 cycle PCR to amplify more of the base PCR constructs.
September 2nd, 2015Connor Liquid Culture Made liquid cultures of the MLC/BBa_K1033931 PCR constructs, the BBa_J23119/BBa_K1073023 PCR construct, the BBa_K861171/BBa_K1073023 PCR construct, the BBa_K118011/BBa_K1033929 PCR construct and the tripart constructs.
September 3rd, 2015Connor ZR Plasmid Miniprep Classic Miniprepped the MLC/BBa_K1033931 PCR constructs, the BBa_J23119/BBa_K1073023 PCR construct, the BBa_K861171/BBa_K1073023 PCR construct, the BBa_K118011/BBa_K1033929 PCR construct and the tripart constructs.
September 4th, 2015Jerry ZR Plasmid Miniprep Classic Miniprepped the viable PCR Construct liquid cultures and nanodropped. Connor PCR/DNA Clean and Concentrator Kit/Elongated DIgestion/Elongated Ligation Conducted a 32 cycle PCR amplification of the PCR constructs. Cleaned with the kit and nanodropped. The results were then digested with miniprepped pSB1C3 and cleaned again after a 2 hour incubation. The PCR constructs were then ligated with the digested pSB1C3 and incubated overnight.
September 5th, 2015Will DNA Clean and Concentrator Prep/Elongated Ligation Prepped the BBa_J23119/BBa_K1033931 and BBa_J23119/BBa_K1033929 PCR constructs. Ligated with digested pSB1C3 and incubated overnight. Connor Transformation Transformed the ligated PCR constructs+pSB1C3. Incubated overnight.
September 6th, 2015Elliot Liquid Cultures/Transformation Created liquid cultures of the viable PCR constructs and transformed the BBa_J23119/BBa_K1033931 and BBa_J23119/BBa_K1033929 PCR constructs. Incubated overnight.
September 7th, 2015Elliot ZR Plasmid Miniprep Classic Miniprepped the liquid cultures of the viable PCR constructs.
September 8th, 2015Connor PCR/Transformation Transformed the the ligated PCR constructs+pSB1C3. Incubated overnight. Also ran a 32 cycle PCR amplification of the BBa_J23119/BBa_K1033931 and BBa_J23119/BBa_K1033929 PCR constructs.
September 10th, 2015Connor ZR Plasmid Miniprep Classic/PCR/Liquid Cultures/DNa Clean and Concentrator Prep Miniprepped the three MLC PCR Constructs. Amplified the BBa_J23119/BBa_K1033931, BBa_J23119/BBa_K1033929, BBa_J23119/BBa_K1073023, BBa_K861171/BBa_K1073023, MLC1/BBa_K1033931, and Tripart PCR constructs with a 32 cycle PCR. Made liquid cultures of pSB1C3 and BBa_B0034 and used the clean kit to prep the PCR products.
September 11th, 2015Connor ZR Plasmid Miniprep Classic/Elongated Ligation/Elongated Digestion/Transformation Miniprepped the pSB1C3 and BBa_B0034 cultures. Digested the PCR constructs, pSB1C3 and BBa_B0034 stocks and incubated for two hours. Ligated the PCR constructs together with the backbones and incubated for 3 hours. Transformed and incubated overnight.
September 12th, 2015Connor Liquid Cultures Prepared liquid cultures of the BBa_J23119/BBa_K1073023, BBa_J23119/BBa_K1033929, and BBa_K118011/BBa_K1033929 PCR constructs.
September 13th, 2015Jerry Characterized the sensitivity parts by varying the amount of glucose concentrations in liquid cultures and monitoring their growth and changes in absorbance over time and with based on glucose concentrations. Connor ZR Plasmid Miniprep Classic Miniprepped pSB1C3 liquid cultures and the BBa_K861171/BBa_K1073023 stocks. Nanodropped and stored.
September 14th, 2015Connor Elongated Digestion/Elongated Ligation/Transformation Digested three pSB1C3 stocks and one BBa_B0034 stock along with 500 ng of purified PCR constructs. Incubated for three hours. Ligated together to insert the constructs into the backbone and incubated for 3 hours. Transformed and incubated overnight.
September 15th, 2015Connor Liquid Culture Made liquid cultures of all of the viable PCR constructs, excluding the MLC1 construct and the full constructs. |