Difference between revisions of "Team:Evry/Software/Predictions"

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             <h1>Prediction</h1>
 
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<h2>Software</h2>
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<p class="lead">We used NetChop and NetMHCpan, two machine learning tools, to predict proteasome cleavage probability and MHC-I affinity. We sorted the potential antigens by a score that combines the two types of predictions. We created a web application that allows users to run this last step of prediction. You can reach it at <a href="http://igem2015.issb.genopole.fr">here</a>.</p>  
 
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<h4>Note</h4>
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<p>In order to be considered for the <a href="https://2015.igem.org/Judging/Awards#SpecialPrizes">Best Software Tool award</a>, you must fill out this page.</p>
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<p>Regardless of the topic, iGEM projects often create or adapt computational tools to move the project forward. Because they are born out of a direct practical need, these software tools (or new computational methods) can be surprisingly useful for other teams. Without necessarily being big or complex, they can make the crucial difference to a project's success. This award tries to find and honour such "nuggets" of computational work.</p>
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<p>
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If you are working on software as your main project, please join the software track. If you are creating software as an addition to your main project, please apply for this award.
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Here are a few examples from previous teams:
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<li><a href="https://2013.igem.org/Team:TU-Munich/Results/Software">TU Munich 2013</a></li>
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<li><a href="https://2014.igem.org/Team:Heidelberg/Software">Heidelberg 2014</a></li>
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<li><a href="https://2014.igem.org/Team:Aachen/Project/Measurement_Device#Software">Aachen 2014</a></li>
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</ul>
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Revision as of 03:58, 19 September 2015

We used NetChop and NetMHCpan, two machine learning tools, to predict proteasome cleavage probability and MHC-I affinity. We sorted the potential antigens by a score that combines the two types of predictions. We created a web application that allows users to run this last step of prediction. You can reach it at here.

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