Difference between revisions of "Team:SYSU-Software"

 
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        <h2>Abstract</h2>
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        <h2 class="center">Collaborative building of genetic design.</h2>
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        <p>The complexity in biological systems has made genetic circuit design difficult for individuals. Without co-development and an open, proof-of-principle engineering platform, it is hard for synthetic biologists to manage this complexity. To address this problem, we developed <span class="bold">Crowdsourcing Open Redesign Engine (CORE)</span>, an open and extensible software that allows users to design, share and cooperate in synthetic biology. CORE mainly consists of two closely interconnected modules. One is the "Synbio Hub". It helps users design and redesign, share and reuse previous projects according to the principle of modularized design. The other one is the CORE Design module embedded in the platform, which promotes genetic circuit design and assists wet-lab practices through protocol management and experiment schedule. Besides, a novel numerical simulation in CORE Design can predict the behaviour of genentic circuit, which was validated by our self-designed <a href="https://2015.igem.org/Team:SYSU-Software/Validation">wetlab experiments.</a>In conclusion, the combination of a crowdsourcing platform and a novel design module makes complex design more accessible to synthetic biologists.</p>
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        <div class="aimg"><a href="http://core.sysusoftware.info"><img src="https://static.igem.org/mediawiki/2015/8/8f/SYSU-Software_Abstract_03.jpg"></a>
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          <p class="center">Start Using</p>
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        <div class="aimg right"><a href="https://2015.igem.org/Team:SYSU-Software/Features"><img src="https://static.igem.org/mediawiki/2015/c/c6/SYSU-Software_Abstract_05.jpg"></a>
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          <p class="center">Features</p>
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        <div class="aimg right"><a href="https://2015.igem.org/Team:SYSU-Software/Tutorials"><img src="https://static.igem.org/mediawiki/2015/c/c7/SYSU-Software_Abstract_07.jpg"></a>
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          <p class="center">User Guide</p>
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        <div class="aimg right"><a href="https://github.com/igemsoftware/SYSU-Software-2015"><img src="https://static.igem.org/mediawiki/2015/0/06/SYSU-Software_Abstract_09.jpg"></a>
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          <p class="center">GitHub</p>
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                <p>Collaboration results in great projects.</p>
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                <p>Crowdsourcing helps synthetic biologists　</p>
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                <p>identify problems and　</p>
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                <p>co-develop their constructs.</p>
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              <h1>“Synbio Hub”</h1>
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                <p>Reuse and re-design lead to efficiency. </p>
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                <p>　Standard repository of genetic design </p>
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                <p>　helps “stand on the shoulder of the giants”</p>
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                <p>while prevent “re-inventing the wheels”.</p>
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            <h1>Co-development</h1>
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            <p>Crowdsourcing platform for collaborative design.</p>
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            <p>A standardized genetic design repositories.</p>
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            <p>Integrated solutions for wet-lab assistance.</p>
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          <p>For Synbio, genetic design is the basis but not the whole story. </p>
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          <p>　Mathematical modeling, plasmid design,</p>
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          <p>protocol management and experiment schedule are good auxiliaries.</p>
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              <div class="word">Developed a software for tracking mouse movement in cage</div>
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              <div class="word">Mentored high-school teams on software project planning</div>
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                <p>Studying wet-lab’s needs</p>
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                <p>Transparency and reproducibility in iGEM</p>
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                <p>Synbio Box: a game on Synbio</p>
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                <p>Risk assessment</p>
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Latest revision as of 17:08, 1 October 2015

SYSU-SOFTWARE IGEM 2015

Abstract

Collaborative building of genetic design.

The complexity in biological systems has made genetic circuit design difficult for individuals. Without co-development and an open, proof-of-principle engineering platform, it is hard for synthetic biologists to manage this complexity. To address this problem, we developed Crowdsourcing Open Redesign Engine (CORE), an open and extensible software that allows users to design, share and cooperate in synthetic biology. CORE mainly consists of two closely interconnected modules. One is the "Synbio Hub". It helps users design and redesign, share and reuse previous projects according to the principle of modularized design. The other one is the CORE Design module embedded in the platform, which promotes genetic circuit design and assists wet-lab practices through protocol management and experiment schedule. Besides, a novel numerical simulation in CORE Design can predict the behaviour of genentic circuit, which was validated by our self-designed wetlab experiments.In conclusion, the combination of a crowdsourcing platform and a novel design module makes complex design more accessible to synthetic biologists.

Start Using

Features

User Guide

GitHub