Difference between revisions of "Team:Birkbeck"

 
(21 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
{{BirkbeckNavigationBar}}
 
{{BirkbeckNavigationBar}}
  
<html>
+
<html>
  
<body>
+
  <body>
  
  
Line 21: Line 21:
 
-->
 
-->
  
<center><embed src="https://static.igem.org/mediawiki/2015/5/5a/Birkbeck_iGEM_2015_Project_Introduction.mp4" width="480px" height="360px" autostart="0" controller="false" loop="TRUE"></center>
+
<br>
 
+
<center><video poster="https://static.igem.org/mediawiki/2015/9/9e/Owligos_Introduction_Presentation_Poster.png" id="projectintroduction" src="https://static.igem.org/mediawiki/2015/5/5a/Birkbeck_iGEM_2015_Project_Introduction.mp4" loop autoplay width="900px" height="675px"></video>
 +
</center>
 +
<br>
  
 
<H1><b>Birkbeck iGEM</b></H1>
 
<H1><b>Birkbeck iGEM</b></H1>
Line 33: Line 35:
  
 
<p>To demonstrate this approach as a <b>proof of concept</b> for the competition, we plan to <b>change this affinity between different strains of <i>E.coli</i></b>; however, <b>ultimately</b> we hope to demonstrate that this principle could also be applied to alter the phage’s host range <b>to other bacterial species</b>. We could then <b>provide a modular system capable of diagnosing a range of diseases</b>. Of course, we haven’t chosen a simple goal. But as Birkbeck pioneers, we are determined to prove ourselves by making our project a success. We can’t wait to present the results of our work at the Giant Jamboree in September!</p>
 
<p>To demonstrate this approach as a <b>proof of concept</b> for the competition, we plan to <b>change this affinity between different strains of <i>E.coli</i></b>; however, <b>ultimately</b> we hope to demonstrate that this principle could also be applied to alter the phage’s host range <b>to other bacterial species</b>. We could then <b>provide a modular system capable of diagnosing a range of diseases</b>. Of course, we haven’t chosen a simple goal. But as Birkbeck pioneers, we are determined to prove ourselves by making our project a success. We can’t wait to present the results of our work at the Giant Jamboree in September!</p>
 +
 +
 +
<br>
 +
 +
 +
<div id="footer">
 +
 +
<center>
 +
 +
  <table>
 +
 +
<tr>
 +
  <td valign="top">
 +
 +
    <center>
 +
 +
      <b>Link</b><br>
 +
<a href="https://2015.igem.org/Team:Birkbeck/Team"><img width="200px" height="auto" src="https://static.igem.org/mediawiki/2015/9/92/Shapoor.iGEM.BBK.2015.profile_picture.png" border="0"/></a>
 +
<br><br>
 +
<a href="https://2015.igem.org/Team:Birkbeck/Research"><img width="200px" height="auto" src="https://static.igem.org/mediawiki/2015/d/d7/Image_for_protocols_Button_iGEM2015_team_birkbeck.jpeg" border="0"/></a>
 +
<br><br>
 +
<a href="https://2015.igem.org/Team:Birkbeck/BioBricks"><img width="200px" height="auto" src="https://static.igem.org/mediawiki/2015/1/16/Birkbeck_ORF314_construct_w_BsaI_primers_before_%26_after.png" border="0"/></a>
 +
<br><br>
 +
<a href="https://2015.igem.org/Team:Birkbeck/Outreach"><img width="200px" height="auto" src="https://static.igem.org/mediawiki/2015/0/08/WP_20150624_15_53_58_Pro.jpg" border="0"/></a>
 +
<br><br>
 +
<a href="https://2015.igem.org/Team:Birkbeck/InterLab_Study"><img width="200px" height="auto" src="https://static.igem.org/mediawiki/2015/0/02/IGEM_2015_team_bbk_Phases_of_bacterial_growth_curve.jpg" border="0"/></a>
 +
<br><br>
 +
<a href="https://2015.igem.org/Team:Birkbeck/Notebook"><img width="200px" height="auto" src="https://static.igem.org/mediawiki/2015/7/7d/Birkbeck_phage_infection2.png" border="0"/></a>
 +
<br><br>
 +
 +
 +
 +
  </td>
 +
 
 +
https://static.igem.org/mediawiki/2015/a/af/Birkbeck_phages2.png
 +
  <td valign="top" rowspan="2" class="Description">
 +
 +
    <center>
 +
<!--<p>To find the background to our project</p>
 +
<br><br><br><br><br><br><br><br>
 +
<p>To find out about protocols carried out in this project</p>
 +
<br><br><br><br><br><br><br><br>
 +
<p>To find measurements & statistical analysis</p>
 +
<br><br><br><br><br><br><br><br><br><br><br><br>
 +
<p>To find out more about our modeling</p>
 +
<br><br><br><br><br><br><br><br><br><br><br><br>
 +
<p>To find out more about our results</p>
 +
<br><br><br><br><br><br><br>
 +
<p>To find concluding remarks about our project</p>
 +
<br><br><br><br><br><br><br>
 +
<p>To find an overview of safety aspects of our project</p>
 +
<br><br><br><br>-->
 +
 +
 +
 +
 +
    </center>
 +
 +
 +
 +
</td>
 +
 
 +
 +
  <td valign="top" rowspan="3" class="Summary">
 +
 +
<!--<a class="twitter-timeline" href="https://twitter.com/BBKiGEM" data-widget-id="641370678273437698">Tweets by @BBKiGEM</a>
 +
<script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+"://platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script>-->
 +
<p>Meet the team! From all participants in the first ever Birkbeck iGEM team to sponsors & people who have supported us throughout the project!</p>
 +
<br><br><br><br><br><br><br><br><br>
 +
<p>See exactly what we have been up to in the lab. Results, discussion, concluding remarks & safety aspects of our project are all in this section</p>
 +
<br><br><br><br><br><br><br><br><br><br><br><br>
 +
<p>See our biobrick collection.</p>
 +
<br><br><br><br><br><br>
 +
<p>See how we have out-reached to both the general community & iGEM community.</p>
 +
<br><br><br><br><br><br><br><br>
 +
<p>Consult our results from the interlab study with teams across the globe participating.</p>
 +
<br><br><br><br><br><br><br>
 +
<p>See what we have been up to on a weekly basis.</p>
 +
<br><br><br><br><br><br><br>
 +
 +
</td>
 +
  </tr>
 +
</table>
 +
 +
    </center>
 +
 +
</div>
 +
 +
 +
  </body>
 +
 +
 +
 +
 +
</div>
 +
 +
 +
 +
</font>
 +
 +
 +
 +
</div>
 +
 +
<!--<p>THANKYOU SEAN</p>
 +
 +
<p>TEAM - This section of our website lets you know more about our team members and those outside the team, including our sponsors, without whom our project would never have been completed.</p>
 +
 +
<p>RESEARCH - This section of our website lets you know important details about our project, like why did we choose it, what have we accomplished in the lab, and how have we ensured it is done safely.</p>
 +
 +
<p>ETC.</p>-->
 +
<!--#################################################################UPDATE NEEDED
 +
  
 
<H1><b>Wiki Categories</b></H1>
 
<H1><b>Wiki Categories</b></H1>
  
<p>Our wiki has six different categories, in addition to this main page. Some are divided into subcategories discussing similar topics, which are described and linked accordingly.</p>
+
<p>Our wiki has six different categories, in addition to this main page. Some are divided into subcategories discussing similar topics, which are described below.</p>
 +
 
  
 
<H2><b><a href="https://2015.igem.org/Team:Birkbeck/Team">Team</a></b></H2>
 
<H2><b><a href="https://2015.igem.org/Team:Birkbeck/Team">Team</a></b></H2>
Line 56: Line 172:
 
<H2><b><a href="https://2015.igem.org/Team:Birkbeck/Cooperation">Cooperation</a></b></H2>
 
<H2><b><a href="https://2015.igem.org/Team:Birkbeck/Cooperation">Cooperation</a></b></H2>
  
<p>Find out about <b>help we have given and recieved</b> by having a look at our <b><a href="https://2015.igem.org/Team:Birkbeck/Cooperation">Cooperation</a> page</b>, which <b>currently includes</b> details of our <b><a href="https://2015.igem.org/Team:Birkbeck/Collaborations">Collaborations</a> with other iGEM teams</b> and <b><a href="https://2015.igem.org/Team:Birkbeck/Attributions/pp">Attributions</a></b> containing details of <b>our sponsors</b>.</p>
+
<p>Find out about <b>help we have given and received</b> by having a look at our <b><a href="https://2015.igem.org/Team:Birkbeck/Cooperation">Cooperation</a> page</b>, which <b>currently includes</b> details of our <b><a href="https://2015.igem.org/Team:Birkbeck/Collaborations">Collaborations</a> with other iGEM teams</b> and <b><a href="https://2015.igem.org/Team:Birkbeck/Attributions/pp">Attributions</a></b> containing details of <b>our sponsors</b>.</p>
  
 
<H2><b><a href="https://2015.igem.org/Team:Birkbeck/Notebook">Journal</a></b></H2>
 
<H2><b><a href="https://2015.igem.org/Team:Birkbeck/Notebook">Journal</a></b></H2>
Line 68: Line 184:
 
<p>Where we live. We'll replace this with a picture of the team when we finally manage to get the whole group into a room together...</p>
 
<p>Where we live. We'll replace this with a picture of the team when we finally manage to get the whole group into a room together...</p>
  
 +
#################################################################UPDATE NEEDED-->
  
  
 
+
    </div>
</div>
+
  
  
Line 115: Line 231:
 
<a href="http://www.bbk.ac.uk/"><img src="https://static.igem.org/mediawiki/2015/b/bc/BBK.2015.iGEM.Team.UniLogo.png" style="max-height:40px;"></a>
 
<a href="http://www.bbk.ac.uk/"><img src="https://static.igem.org/mediawiki/2015/b/bc/BBK.2015.iGEM.Team.UniLogo.png" style="max-height:40px;"></a>
 
<a href="http://www.ismb.lon.ac.uk/"><img src="https://static.igem.org/mediawiki/2015/a/a4/BBK.2015.iGEM.Team.ISMBLogo.png" style="max-height:40px;"></a>
 
<a href="http://www.ismb.lon.ac.uk/"><img src="https://static.igem.org/mediawiki/2015/a/a4/BBK.2015.iGEM.Team.ISMBLogo.png" style="max-height:40px;"></a>
<a href="https://www.neb.com/"><img src="https://static.igem.org/mediawiki/2014/0/06/NEB_logo.png" style="max-height:40px;"></a>
+
<a href="https://www.neb.com/"><img src="https://static.igem.org/mediawiki/2015/0/0b/NEB_SPONSOR_LOGO.png" style="max-height:40px;"></a>
  
  
Line 121: Line 237:
  
  
<a href="http://www.snapgene.com/"><img src="https://static.igem.org/mediawiki/2014/5/50/SnapGene_Logo_288.png" style="max-height:40px;"></a>
+
<a href="http://www.snapgene.com/"><img src="https://static.igem.org/mediawiki/2015/a/ae/SNAPGENE_SPONSOR_LOGO.png" style="max-height:40px;"></a>
 
<a href="http://www.idtdna.com/site"><img src="https://static.igem.org/mediawiki/2015/0/07/IDT_Logo_2015_%28corp_blue%29.jpg" style="max-height:40px;"></a>
 
<a href="http://www.idtdna.com/site"><img src="https://static.igem.org/mediawiki/2015/0/07/IDT_Logo_2015_%28corp_blue%29.jpg" style="max-height:40px;"></a>
  
Line 132: Line 248:
 
<a href="http://www.genscript.com/"><img src="https://static.igem.org/mediawiki/2015/e/ee/Aalto-Helsinki_sponsorlogo_Genscript.gif" style="max-height:40px;"></a>
 
<a href="http://www.genscript.com/"><img src="https://static.igem.org/mediawiki/2015/e/ee/Aalto-Helsinki_sponsorlogo_Genscript.gif" style="max-height:40px;"></a>
 
<a href="http://store.biobasic.com/"><img src="https://static.igem.org/mediawiki/2015/d/d4/BBK_Team_2015_BBI_LOGO_JPEG.JPG" style="max-height:40px;"></a>
 
<a href="http://store.biobasic.com/"><img src="https://static.igem.org/mediawiki/2015/d/d4/BBK_Team_2015_BBI_LOGO_JPEG.JPG" style="max-height:40px;"></a>
<a href="http://www.bioline.com/uk/"><img src="https://static.igem.org/mediawiki/2015/7/79/BBK_Team_2015_Bioline_Logo.png" style="max-height:40px;"></a>
+
<a href="http://www.bioline.com/uk/"><img src="https://static.igem.org/mediawiki/2015/a/a5/BIOLINE_SPONSOR_LOGO.png" style="max-height:40px;"></a>
  
  
Line 138: Line 254:
  
  
<a href="http://www.engineering.ucl.ac.uk/"><img src="https://static.igem.org/mediawiki/2014/1/1a/UCL_Eng_logo_2.png" style="max-height:40px;"></a>
+
<a href="http://www.engineering.ucl.ac.uk/"><img src="https://static.igem.org/mediawiki/2015/3/31/UCL_ENG_SPONSOR_LOGO.png" style="max-height:40px;"></a>
 
<a href="http://www.thistlescientific.co.uk/"><img src="https://static.igem.org/mediawiki/2015/5/5d/IGEM_2015_Team_bbk_Thistle_Scientific.jpeg" style="max-height:40px;"></a>
 
<a href="http://www.thistlescientific.co.uk/"><img src="https://static.igem.org/mediawiki/2015/5/5d/IGEM_2015_Team_bbk_Thistle_Scientific.jpeg" style="max-height:40px;"></a>
  
Line 170: Line 286:
  
  
</body>
+
  </body>
 
+
<!--Hiding this for now. (30/06/15, YKH)
+
<h1> Welcome to iGEM 2015! </h1>
+
<p>Your team has been approved and you are ready to start the iGEM season! </p>
+
 
+
<h4>Before you start: </h4>
+
<p> Please read the following pages:</p>
+
<ul>
+
<li>  <a href="https://2015.igem.org/Requirements">Requirements page </a> </li>
+
<li> <a href="https://2015.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
+
</ul>
+
 
+
<div class="highlightBox">
+
<h4> Styling your wiki </h4>
+
<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
+
<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>
+
</div>
+
 
+
<h4> Editing your wiki </h4>
+
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
+
<p> <a href="https://2015.igem.org/wiki/index.php?title=Team:Birkbeck&action=edit"> Click here to edit this page! </a></p>
+
<p>See tips on how to edit your wiki on the <a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation</a> page.</p>
+
 
+
 
+
<h4>Templates </h4>
+
<p> This year we have created templates for teams to use freely. More information on how to use and edit the templates can be found on the
+
<a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation </a> page.</p>
+
 
+
 
+
<h4>Tips</h4>
+
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
+
<ul>
+
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
+
<li>Be clear about what you are doing and how you plan to do this.</li>
+
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
+
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
+
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
+
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2015.igem.org/Calendar_of_Events">iGEM 2015 calendar</a> </li>
+
<li>Have lots of fun! </li>
+
</ul>
+
 
+
 
+
<h4>Inspiration</h4>
+
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
+
<ul>
+
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
+
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
+
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
+
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
+
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
+
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
+
</ul>
+
 
+
<h4> Uploading pictures and files </h4>
+
<p> You can upload your pictures and files to the iGEM 2015 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
+
When you upload, set the "Destination Filename" to <code>Team:YourOfficialTeamName/NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
+
 
+
 
+
 
+
 
+
 
+
</div></div> <!--These are the closing tags for div id="mainContainer" and div id="contentContainer". The corresponding opening tags appear in the template that is {{included}} at the top of this page.-->
+
  
  

Latest revision as of 16:37, 16 October 2015

iGEM Westminster Logo




Birkbeck iGEM

The Owligos are the first-ever team entered into the international Genetically Engineered Machine (iGEM) Competition by Birkbeck, University of London. We’re a varied group of students who reflect the diversity and unique character of our institution: many of us have chosen science as a second career, having already spent some time in full-time work. For most of us, this has meant making our way through a degree while continuing to work full-time. Hopefully this kind of dedication will help us successfully navigate our way through our iGEM project.

Project Aim

Our project aims to create a new diagnostic solution that will be low-tech and cost-effective enough to allow its usage in deprived and remote communities. We’re attempting to engineer a bacteriophage lambda chassis to change its host affinity, while simultaneously adding a marker that will facilitate easy detection of a target bacterial pathogen in patient samples.

To demonstrate this approach as a proof of concept for the competition, we plan to change this affinity between different strains of E.coli; however, ultimately we hope to demonstrate that this principle could also be applied to alter the phage’s host range to other bacterial species. We could then provide a modular system capable of diagnosing a range of diseases. Of course, we haven’t chosen a simple goal. But as Birkbeck pioneers, we are determined to prove ourselves by making our project a success. We can’t wait to present the results of our work at the Giant Jamboree in September!