Difference between revisions of "Team:Aalto-Helsinki/LabBook"
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<style type="text/css"> | <style type="text/css"> | ||
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+ | /* This changes the color of navbar text */ | ||
+ | #labnav { | ||
+ | color: gray !important; | ||
+ | } | ||
/* Styling for our amazing table! */ | /* Styling for our amazing table! */ | ||
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margin: 10px 0 10px 0; | margin: 10px 0 10px 0; | ||
text-align:center; | text-align:center; | ||
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} | } | ||
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position: fixed; | position: fixed; | ||
left: 0; | left: 0; | ||
− | + | bottom: 2%; | |
width: 10%; | width: 10%; | ||
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} | } | ||
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#sidenav > li > a { | #sidenav > li > a { | ||
padding-top: 1px; | padding-top: 1px; | ||
padding-bottom: 0px; | padding-bottom: 0px; | ||
} | } | ||
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#sidenav > li > a > h4 { | #sidenav > li > a > h4 { | ||
− | margin-top: | + | font-size: 15px; |
− | padding-top: | + | margin-top:1px; |
− | padding-bottom: | + | padding-top: 0px; |
+ | padding-bottom: 0px; | ||
} | } | ||
+ | #sidenav a:hover, | ||
+ | #sidenav a.active { | ||
+ | color: black !important; | ||
+ | } | ||
+ | |||
+ | /* Let's hide the navbar when the device is small! */ | ||
+ | @media screen and (max-width: 760px) { | ||
+ | #sidenav { display: none; } | ||
+ | } | ||
+ | |||
+ | /* Background pic */ | ||
+ | .plasmids { | ||
+ | background-repeat: repeat-y; | ||
+ | background-image: url("https://static.igem.org/mediawiki/2015/3/3f/Aalto-Helsinki_plasmidspink.png"); | ||
+ | background-size: 100%; | ||
+ | } | ||
+ | |||
+ | /* Fonts */ | ||
+ | .h3 { | ||
+ | font-size:25px; | ||
+ | } | ||
+ | |||
</style> | </style> | ||
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<ul id="sidenav" class="nav nav-stacked"><!-- nav-pills if we want rounded corners --> | <ul id="sidenav" class="nav nav-stacked"><!-- nav-pills if we want rounded corners --> | ||
− | <li><a href="#week1"><h4>Week 1</h4></a></li> | + | <li><a href="#week1" data-scroll="week1"><h4>Week 1</h4></a></li> |
− | <li><a href="#week2"><h4>Week 2</h4></a></li> | + | <li><a href="#week2" data-scroll="week2"><h4>Week 2</h4></a></li> |
− | <li><a href="#week3"><h4>Week 3</h4></a></li> | + | <li><a href="#week3" data-scroll="week3"><h4>Week 3</h4></a></li> |
− | <li><a href="#week4"><h4>Week 4</h4></a></li> | + | <li><a href="#week4" data-scroll="week4"><h4>Week 4</h4></a></li> |
− | <li><a href="#week5"><h4>Week 5</h4></a></li> | + | <li><a href="#week5" data-scroll="week5"><h4>Week 5</h4></a></li> |
− | <li><a href="#week6"><h4>Week 6</h4></a></li> | + | <li><a href="#week6" data-scroll="week6"><h4>Week 6</h4></a></li> |
− | <li><a href="#week7"><h4>Week 7</h4></a></li> | + | <li><a href="#week7" data-scroll="week7"><h4>Week 7</h4></a></li> |
− | <li><a href="#week8"><h4>Week 8</h4></a></li> | + | <li><a href="#week8" data-scroll="week8"><h4>Week 8</h4></a></li> |
− | <li><a href="#week9"><h4>Week 9</h4></a></li> | + | <li><a href="#week9" data-scroll="week9"><h4>Week 9</h4></a></li> |
− | <li><a href="#week10"><h4>Week 10</h4></a></li> | + | <li><a href="#week10" data-scroll="week10"><h4>Week 10</h4></a></li> |
− | <li><a href="#week11"><h4>Week 11</h4></a></li> | + | <li><a href="#week11" data-scroll="week11"><h4>Week 11</h4></a></li> |
− | <li><a href="#week12"><h4>Week 12</h4></a></li> | + | <li><a href="#week12" data-scroll="week12"><h4>Week 12</h4></a></li> |
− | <li><a href="#week13"><h4>Week 13</h4></a></li> | + | <li><a href="#week13" data-scroll="week13"><h4>Week 13</h4></a></li> |
− | <li><a href="#week14"><h4>Week 14</h4></a></li> | + | <li><a href="#week14" data-scroll="week14"><h4>Week 14</h4></a></li> |
− | <li><a href="#week15"><h4>Week 15</h4></a></li> | + | <li><a href="#week15" data-scroll="week15"><h4>Week 15</h4></a></li> |
− | <li><a href="#week16"><h4>Week 16</h4></a></li> | + | <li><a href="#week16" data-scroll="week16"><h4>Week 16</h4></a></li> |
− | <li><a href="#week17"><h4>Week 17</h4></a></li> | + | <li><a href="#week17" data-scroll="week17"><h4>Week 17</h4></a></li> |
− | <li><a href="#week18"><h4>Week 18</h4></a></li> | + | <li><a href="#week18" data-scroll="week18"><h4>Week 18</h4></a></li> |
− | + | <li><a href="#"><h4 style="border-top:solid;">To the Top</h4></a></li> | |
+ | <li><a href="https://2015.igem.org/Team:Aalto-Helsinki/Lab" ><h4>To the Parent Page</h4></a></li> | ||
+ | </ul> | ||
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− | + | <div class="plasmids"> | |
<div class = "inner-container" > | <div class = "inner-container" > | ||
+ | <h1>Lab Book</h1> | ||
+ | <p> Before reading our lab notes, familiarize yourelf with our <a href="https://static.igem.org/mediawiki/2015/7/7e/Aalto-Helsinki_plasmids-primers.xls">excel sheet</a>, which specifies the nomenclature we've used in out project. You can also find all of our primers on this excel.</p> | ||
+ | </div><!-- end inner-container--> | ||
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+ | <!-- Here the code for small horizontal gap for our tables, copy and paste where you want it Anna! --><!-- | ||
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− | + | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | |
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</tr> | </tr> | ||
− | + | --> | |
− | < | + | |
+ | |||
+ | <!-- Week 1 below --> | ||
+ | <section id="week1" class="active" data-anchor="week1"> | ||
+ | <h2>Week 1</h2> | ||
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
Line 244: | Line 133: | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3>May 18th - May 22nd</h3></td> | + | <td class="bottomline"><h3>May 18th -<br/> May 22nd</h3></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Plates</h3></div></td> | + | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/> <span style="font-size:20px">Plates</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
<p>Making Cm <br/>plates</p> | <p>Making Cm <br/>plates</p> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Competent Cells</h3></div></td> | + | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px">Competent Cells </span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
<p>Preparing <br/>solutions for <br/>competent cells</p> | <p>Preparing <br/>solutions for <br/>competent cells</p> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>o/n culture <br/> of E. coli <br/> TOP10</p> | + | <p>o/n culture <br/> of <i>E. coli</i> <br/> TOP10</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
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</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
− | <p> | + | <p>Transformation <br/> efficiency kit</p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>o/n culture <br/> of E. coli <br/> BL21(DE3)</p> | + | <p>o/n culture <br/> of <i>E. coli</i> <br/> BL21(DE3)</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
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</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
− | <p> | + | <p>Transformation <br/> efficiency kit</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
− | <p>Colonies | + | <p>Colonies have<br/> the wrong <br/>color</p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Propagations</h3></div></td> | + | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px">Propagations</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Transformed <br/> AH001-AH008 <br/> into TOP10 </p> | + | <p style="font-size:12px">Transformed <br/> AH001-AH008 <br/> into TOP10 </p> |
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
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</td> | </td> | ||
− | <td class=" | + | <td class="reddown arrow" > |
− | <p>No colonies for <br/> | + | <p style="font-size:12px">No colonies for <br/> AH005, AH007 <br/> or AH008</p> |
</td> | </td> | ||
</tr> | </tr> | ||
</table> | </table> | ||
+ | </section> | ||
− | < | + | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> |
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/2/2b/Aalto-Helsinki_week1.pdf" target="_blank">here</a> to read the full lab notes of week 1.</p></div> | ||
+ | |||
+ | <!-- Week 1 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 2 below --> | ||
+ | <section id="week2" data-anchor="week2"> | ||
+ | <h2>Week 2</h2> | ||
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
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<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3>May 25th - May 29th</h3></td> | + | <td class="bottomline"><h3>May 25th -<br/> May 29th</h3></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3>Preparations <span style="font-size:20px">Propagating</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
<p style="font-size:12px">Transformed <br/>AH007-AH009,<br/> AH005 & AH019 <br/> into TOP10</p> | <p style="font-size:12px">Transformed <br/>AH007-AH009,<br/> AH005 & AH019 <br/> into TOP10</p> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
− | <td> | + | <td class="white arrow" > |
+ | <p style="font-size:12px">o/n culture of<br/> AH001-AH004 <br/> & AH006</p> | ||
</td> | </td> | ||
− | + | <td class="blue arrow" > | |
− | <td class=" | + | <p >MiniPrep</p> |
− | <p> | + | |
</td> | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Re-transform <br/> into TOP10</p> | + | <p>Re-transform <br/> AH005<br/> into TOP10</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Competent Cells</h3></div></td> | + | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> |
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Checking <br/><span style="font-size:20px">Competent Cells</span></h3></div></td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>o/n culture <br/> of BL21(DE3) <br/> transformants</p> | + | <p style="font-size:12px">o/n culture <br/> of BL21(DE3) <br/> transformants</p> |
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
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<p> Smeared gels</p> | <p> Smeared gels</p> | ||
</td> | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td> | ||
+ | |||
+ | </td> | ||
+ | |||
+ | <td> | ||
+ | |||
+ | </td> | ||
+ | <td class="redup arrow" > | ||
+ | <p style="font-size:12px">AH001+<br/> AH003+AH008 <br/>-> AH013</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Repeat<br/> ligation</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/> extract <br/>from gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p> Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Plates in <br/>rt over <br/>weekend</p> | ||
+ | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3 | + | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's <br/> <span style="font-size:20px">Assembly </span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
<p style="font-size:12px">Restrict <br/>AH001-AH004 <br/> & AH006-AH008</p> | <p style="font-size:12px">Restrict <br/>AH001-AH004 <br/> & AH006-AH008</p> | ||
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</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
− | <p>AH002+<br/> AH004+AH008 <br/>-> AH014</p> | + | <p style="font-size:12px">AH002+<br/> AH004+AH008 <br/>-> AH014</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
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</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p> Transform <br/> into TOP10</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Plates in | + | <p>Plates in <br/>rt over <br/>weekend</p> |
</td> | </td> | ||
</tr> | </tr> | ||
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</td> | </td> | ||
− | <td class=" | + | <td class="reddown arrow" > |
− | <p>AH001+<br/> AH006+AH008 <br/>-> AH011</p> | + | <p style="font-size:12px">AH001+<br/> AH006+AH008 <br/>-> AH011</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
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</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p> Transform <br/> into TOP10</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Plates in | + | <p>Plates in <br/>rt over <br/>weekend</p> |
</td> | </td> | ||
</tr> | </tr> | ||
− | + | </table> | |
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− | + | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | |
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/5/51/Aalto-Helsinki_week2.pdf" target="_blank">here</a> to read the full lab notes of week 2.</p></div> | ||
− | + | </section> | |
− | + | <!-- Week 2 above --> | |
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− | < | + | <!-- Week 3 below --> |
+ | <section id="week3" data-anchor="week3"> | ||
+ | <h2>Week 3</h2> | ||
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
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<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3>June 1st - June 5th</h3></td> | + | <td class="bottomline"><h3>June 1st -<br/> June 5th</h3></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/><span style="font-size:20px">Propagating</span></h3></div></td> |
+ | <td class="white arrow" > | ||
+ | <p style="font-size:13px;">Transform <br/> AH020 & AH021 <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Plates in rt <br/> over weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's <br/> <span style="font-size:20px">Assembly</span></h3></div></td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
Line 491: | Line 410: | ||
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Ligate & <br/> | + | <p>Ligate & <br/> transform <br/> into TOP10</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
Line 498: | Line 417: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
<td class="blue arrow" > | <td class="blue arrow" > | ||
Line 510: | Line 429: | ||
</td> | </td> | ||
</tr> | </tr> | ||
− | + | ||
− | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | |
+ | |||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p | + | <p>Assembling <br/>AH015</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p> Ligate AH002+ <br/> AH005+AH008</p> |
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/> extract<br/> from gel</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n cultures</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No colonies <br/>on the plate</p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
− | |||
</table> | </table> | ||
− | < | + | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> |
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/7/70/Aalto-Helsinki_week3.pdf" target="_blank">here</a> to read the full lab notes of week 3.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 3 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 4 below --> | ||
+ | <section id="week4" data-anchor="week4"> | ||
+ | |||
+ | <h2>Week 4</h2> | ||
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
Line 534: | Line 475: | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3>June 8th - June 12th</h3></td> | + | <td class="bottomline"><h3>June 8th -<br/> June 12th</h3></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/><span style="font-size:20px">Propagating</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
Line 548: | Line 489: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class=" | + | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> |
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's <br/> <span style="font-size:20px">Assembly</span></h3></div></td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Re-assembling <br/> | + | <p style="font-size:12px">Re-assembling <br/> AH011, AH013 <br/>& AH014</p> |
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
Line 564: | Line 508: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
Line 583: | Line 527: | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
<p>MiniPrep</p> | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/1/1f/Aalto-Helsinki_week4.pdf" target="_blank">here</a> to read the full lab notes of week 4.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 4 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 5 below --> | ||
+ | <section id="week5" data-anchor="week5"> | ||
+ | <h2>Week 5</h2> | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>June 15th -<br/> June 19th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td> | ||
+ | <td/> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="redup arrow" > | ||
+ | <p>AH016 <br/>wrong size<br/> on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="blueup arrow" > | ||
+ | <p>Colonies in <br/>BL21(DE3)</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>o/n cultures <br/>& MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>AH018 OK <br/> on gel</p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's <br/> <span style="font-size:20px">Assembly</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p style="font-size: | + | <p style="font-size:12px">Screening AH011 <br/>& AH013-AH015 <br/>by gel <br/> electrophoresis</p> |
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>AH011, AH013 <br/> & AH015 OK</p> | ||
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p>Assembling <br/>AH016 & <br/>AH018</p> |
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into TOP10 & BL21(DE3)</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>T7 promoter <br/>doesn't work <br/>in TOP10...</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="reddown arrow" > | ||
+ | <p>AH014 <br/>incorrect <br/>size</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Assembling AH017 <br/>with multiple <br/>AH014 plasmids</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/> extract <br/> from gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into BL21(DE3)</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Colonies are <br/>not blue</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-assembling <br/>AH016 &<br/> AH018</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict <br/> extract <br/> from gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into <br/>BL21(DE3)</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Colonies are <br/> not blue</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/> <span style="font-size:20px">Linearized Backbones</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n cultures of <br/> AH007-AH009</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Restrict & <br/> extract <br/> from gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low <br/>concentration</p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
− | |||
− | |||
</table> | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/f/f8/Aalto-Helsinki_week5.pdf" target="_blank">here</a> to read the full lab notes of week 5.</p></div> | ||
+ | </section> | ||
+ | <!-- Week 5 above --> | ||
− | |||
+ | <!-- Week 6 above --> | ||
+ | <section id="week6" data-anchor="week6"> | ||
− | + | <h2>Week 6</h2> | |
− | <h2 | + | |
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
Line 614: | Line 680: | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>June 22nd -<br/> June 26th</h3></td> |
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/> <span style="font-size:20px">Linearized Backbones</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p >o/n cultures of <br/>AH007-AH009</p> | ||
+ | </td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/>extract <br/>from gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3 | + | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's <br/><span style="font-size:20px"> Assembly</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
<p>Re-assembling AH016 & <br/>AH018</p> | <p>Re-assembling AH016 & <br/>AH018</p> | ||
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p>Transform <br/>into <br/>BL21(DE3)</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
Line 629: | Line 714: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px"> Propagation</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>o/n cultures of <br/> | + | <p style="font-size:12px">o/n cultures of <br/> AH016 & AH018 <br/> in TOP10</p> |
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
Line 637: | Line 722: | ||
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Transform <br/>into BL21(DE3)</p> | + | <p>Transform <br/>into <br/> BL21(DE3)</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
Line 644: | Line 729: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Measurement < | + | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px">Measurement</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
<p>AH018 in <br/>BL21(DE3)</p> | <p>AH018 in <br/>BL21(DE3)</p> | ||
Line 662: | Line 747: | ||
<td> | <td> | ||
</td> | </td> | ||
− | <td class=" | + | <td class="whitedown arrow" > |
− | <p >Refresh on IPTG plate</p> | + | <p >Refresh on<br/> IPTG plate</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
Line 671: | Line 756: | ||
</tr> | </tr> | ||
− | + | </table> | |
− | + | ||
− | + | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | |
− | + | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/9/9c/Aalto-Helsinki_week6.pdf" target="_blank">here</a> to read the full lab notes of week 6. <br> Blue chromoprotein measurement data from 23.6. can be found <a href="https://static.igem.org/mediawiki/2015/6/63/Aalto-Helsinki_blue_chromoprotein_measurement_data_230615.xls" target="_blank">here</a>.</p></div> | |
− | + | ||
− | + | </section> | |
− | + | <!-- Week 6 above --> | |
− | + | ||
− | |||
− | |||
− | |||
− | |||
− | |||
+ | <!-- Week 7 below --> | ||
+ | <section id="week7" data-anchor="week7"> | ||
− | <h2 | + | <h2>Week 7</h2> |
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
Line 701: | Line 780: | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>June 29th -<br/> July 3rd</h3></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Preparations<br/> | + | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/> <span style="font-size:20px">Linearized Backbones</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Transform <br/>AH007-AH009 <br/> into TOP10</p> | + | <p style="font-size:12px">Transform <br/>AH007-AH009 <br/> into TOP10</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
Line 714: | Line 793: | ||
<p>Use iGEM's <br/>linearized <br/>backbones</p> | <p>Use iGEM's <br/>linearized <br/>backbones</p> | ||
</td> | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td class="first rightline"><div class="heightdiv"><h3>Testing RBS's</h3></div></td> | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's</h3></div></td> | ||
− | <td class=" | + | <td class="white arrow" > |
− | <p style="color: | + | <p style="color:black;font-size:12px">o/n cultures of <br/> AH016&AH018 <br/> in BL21</p> |
</td> | </td> | ||
− | <td class=" | + | <td class="white arrow" > |
− | <p style="color: | + | <p style="color:black">IPTG <br/>induction</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
− | <p style="color: | + | <p style="color:white">No Blue <br/> chromoprotein</p> |
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>Refresh AH016 &<br/>AH018 on <br/> IPTG plate</p> | + | <p style="font-size:12px">Refresh AH016 &<br/>AH018 on <br/> IPTG plate</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
<p >No blue <br/> chromoprotein</p> | <p >No blue <br/> chromoprotein</p> | ||
</td> | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3>Violacein | + | <td class="first rightline"><div class="heightdiv"><h3>Violacein Plasmid <br/> <span style="font-size:20px">Construction</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>PCR | + | <p>PCR AH020 <br/>with<br/> P012&P013</p> |
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
<p>PCR <br/>purification</p> | <p>PCR <br/>purification</p> | ||
</td> | </td> | ||
− | <td class=" | + | <td class="white arrow" > |
<p>VioA waits <br/>for 2nd PCR</p> | <p>VioA waits <br/>for 2nd PCR</p> | ||
</td> | </td> | ||
Line 754: | Line 839: | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p>PCR AH20 with<br/> P024&P025</p> | + | <p>PCR AH20 <br/>with<br/> P024&P025</p> |
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
Line 765: | Line 850: | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p | + | <p>PCR AH20 <br/>with<br/> P034&P035</p> |
</td> | </td> | ||
− | <td class=" | + | <td class="blue arrow" > |
− | <p | + | <p>PCR <br/>purification</p> |
</td> | </td> | ||
− | <td class=" | + | <td class="white arrow" > |
− | <p | + | <p>VioE waits <br/>for 2nd PCR</p> |
</td> | </td> | ||
</tr> | </tr> | ||
Line 778: | Line 863: | ||
− | < | + | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> |
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/6/65/Aalto-Helsinki_week7.pdf" target="_blank">here</a> to read the full lab notes of week 7. <br> Blue chromoprotein measurement data from 30.6. can be found <a href="https://static.igem.org/mediawiki/2015/a/a5/Aalto-Helsinki_blue_chromoprotein_measurement_data_300615.xls" target="_blank">here</a>.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 7 above --> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- Week 8 below --> | ||
+ | <section id="week8" data-anchor="week8"> | ||
+ | |||
+ | <h2>Week 8</h2> | ||
<table > | <table > | ||
<tr> | <tr> | ||
− | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;"> | + | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> |
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>WorkFlow</h3></td> |
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
Line 789: | Line 885: | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
<td class="bottomline"></td> | <td class="bottomline"></td> | ||
− | <td class="bottomline"><h3> | + | <td class="bottomline"><h3>July 6th -<br/> July 10th</h3></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3>Preparations <span style="font-size:20px">Competent Cells</span></h3></div></td> |
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p style="font-size:12px">Preparing <br/> PK BL21(DE3)<br/> competent cells</p> |
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>(Cells <br/>called PK's <br/>BL21(DE3))</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Cells stored <br/>in -80°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <br/> <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>PCR AH021 <br/>with <br/>P019&P020</p> | ||
</td> | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
− | <p>Problem | + | <p>Problem <br/>with PCR <br/>machine</p> |
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
Line 819: | Line 930: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> |
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Testing RBS's</h3></div></td> | ||
+ | |||
+ | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p style="font-size:12px">Transform AH016<br/> & AH018 into<br/> PK BL21(DE3)</p> |
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Refresh <br/>transformants <br/>on IPTG plates</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No blue <br/> chromoprotein</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Violacein Plasmid <br/><span style="font-size:20px"> Construction</span></h3></div></td> | ||
+ | |||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Gradient PCR for <br/>AH020 with <br/>P024&P025</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR<br/> purification</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/4/43/Aalto-Helsinki_week8.pdf" target="_blank">here</a> to read the full lab notes of week 8.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 8 above --> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- Week 9 below --> | ||
+ | <section id="week9" data-anchor="week9"> | ||
+ | |||
+ | <h2>Week 9</h2> | ||
+ | |||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>July 13th -<br/> July 17th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/> <span style="font-size:20px">Propagations</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture <br/>of AH029</p> | ||
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
− | <p> | + | <p>MiniPrep</p> |
− | </td> | + | </td> |
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td></td> | ||
+ | <td class="blueup arrow" > | ||
+ | <p>CAR2 OK</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR <br/>purification</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low yield</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <span style="font-size:20px">Construction </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Construct <br/>from 3 parts:<br/> CAR1-3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>PCR for <br/> CAR1-3</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p style="font-size:12px">CAR1 & 3 <br/> unspecific bands</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Gradient PCR <br/>for CAR3</p> | ||
+ | </td> | ||
+ | <td class="blue arrow"> | ||
+ | <p>PCR with <br/> DMSO <br/>for CAR3</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Store <br/>in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td></td> <td></td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p style="font-size:12px">PCR with DMSO <br/>for CAR1</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No product</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="blueup arrow" > | ||
+ | <p>PCR with <br/>DMSO for <br/>AtoB1</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Store <br/> in -20°C</p> | ||
+ | </td> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2 <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Construct from <br/>4 parts: <br/>AtoB1-4</p> | ||
+ | </td> | ||
+ | <td class="red arrow"> | ||
+ | <p>PCR for <br/>AtoB 1-4</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Gradient PCR <br/> for AtoB2</p> | ||
+ | </td> | ||
+ | <td class="blue arrow"> | ||
+ | <p>PCR with <br/>DMSO for <br/>AtoB2</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Store <br/> in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td></td> | ||
+ | <td class="bluedown arrow"> | ||
+ | <p>Gradient PCR <br/> for AtoB3</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Extract & <br/> purify from gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Store <br/> in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="bluedown arrow" > | ||
+ | <p>Extract & <br/> purify AtoB4 <br/>from gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Store <br/> in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP Brick <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture<br/> of AH044</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/2/28/Aalto-Helsinki_week9.pdf" target="_blank">here</a> to read the full lab notes of week 9.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 9 above --> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- Week 10 below --> | ||
+ | <section id="week10" data-anchor="week10"> | ||
+ | |||
+ | <h2>Week 10</h2> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>July 20th -<br/> July 24th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <span style="font-size:20px">Linearized Backbones</span></h3></div></td> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform AH043 into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class=blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Restrict</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gradient PCR <br/> for CAR1</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Extract & <br/> purify from gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low yield</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">TOPO Blunt End <br/>cloning and <br/>transform into TOP10t</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Screen with <br/> colony PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Screen more <br/> colonies</p> | ||
+ | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <tr> |
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>CAR2 PCR <br/>ran on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gradient PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Extract & <br/> purify <br/> from gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p style="font-size:12px">Illegal restriction <br/>site found <br/>in the part</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>CAR3 PCR <br/>with DMSO <br/>run on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Extract <br/> purify from gel <br/><span style="font-size:12px">unclean product</span></p> | ||
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | + | <p style="font-size:12px">TOPO Blunt End <br/>cloning and <br/>transform into TOP10t</p> | |
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Screen with <br/> colony PCR</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Extract & <br/>purify <br/>from gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2 <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Run AtoB1 <br/>PCR with <br/>DMSO on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Extract & <br/> purify from gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low yield</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Run AtoB2 <br/>PCR with <br/>DMSO on gel</p> | ||
</td> | </td> | ||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p>Extract & <br/>purify from gel</p> |
</td> | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low yield</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | |||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/2/2b/Aalto-Helsinki_week10.pdf" target="_blank">here</a> to read the full lab notes of week 10.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 10 above --> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- Week 11 below --> | ||
+ | <section id="week11" data-anchor="week11"> | ||
+ | |||
+ | <h2>Week 11</h2> | ||
+ | |||
+ | |||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>July 27th -<br/> July 31st</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <span style="font-size:20px">Linearized Backbones</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-restrict <br/>AH043</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gel purification</p> | ||
+ | </td> | ||
<td class="red arrow" > | <td class="red arrow" > | ||
− | <p> | + | <p>Low yield</p> |
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-restrict</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3> <span style="font-size:20px">Propagations</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture<br/> of AH031</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td class="first rightline"><div class="heightdiv"><h3> | + | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> |
</td> | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/>AH033 into<br/> TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low yield</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Low yield, <br/>but stored <br/>in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Continue <br/>CAR1 colony <br/>screening</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Screen more <br/> colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR <br/>purification</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="red arrow" > | ||
+ | <p>PCR for <br/>new CAR2</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Gradient PCR <br/>with KAPA<br/> polymerase</p> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR <br/> purification</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p style="font-size:12px">Re-do colony <br/>PCR for CAR3 <br/>successful TOPO colony</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Re-do <br/>colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p>o/n culture of <br/>the colony</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p style="font-size:12px">KAPA <br/>gradient PCR <br/>for CAR3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gel purification</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2 <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p style="font-size:12px">TOPO Blunt End <br/>Cloning for AtoB1<br/> and transformation<br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Screening <br/>with colony <br/>PCR</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR <br/> purification</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p style="font-size:12px">KAPA gradient <br/>PCR for AtoB3&4</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>PCR purification <br/>for AtoB3</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p>Gel <br/> purification <br/> for AtoB4</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
<td class="white arrow" > | <td class="white arrow" > | ||
− | <p> | + | <p>2nd PCR <br/> for BglX <br/> (from AH021)</p> |
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Stored in -4°C <br/>over the <br/>weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="red arrow" > | ||
+ | <p>PCR for <br/>Cen1 & Cen2</p> | ||
</td> | </td> | ||
<td class="blue arrow" > | <td class="blue arrow" > | ||
− | <p>PCR purification</p> | + | <p>Gradient PCR <br/>with KAPA <br/>polymerase</p> |
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR <br/> purification for <br/> Cen2</p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="bluedown arrow" > | ||
+ | <p>Gel purification <br/> for Cen1</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Violacein Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>2nd PCR <br/> for VioA <br/> (from AH020)</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Stored in -4°C <br/>over the <br/>weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
</table> | </table> | ||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/1/15/Aalto-Helsinki_week11.pdf" target="_blank">here</a> to read the full lab notes of week 11.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 11 above --> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- Week 12 below --> | ||
+ | <section id="week12" data-anchor="week12"> | ||
+ | |||
+ | <h2>Week 12</h2> | ||
+ | |||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>August 3rd -<br/> August 8th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <span style="font-size:20px">Linearized Backbones</span></h3></div></td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Check <br/>restricted <br/>AH043 on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Use for CAR <br/>OE-PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-restrict <br/>with high <br/>amount of DNA</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Extract &<br/> purify <br/>from gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Low yield</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">New o/n culture <br/>of AH043 (needed <br/>more backbone)</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Remove insert</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Use for CAR <br/>NEBuilder</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px">Fixing Commercial Backbones</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Restrict and <br/>ligate AH006 <br/>into AH031&AH033</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>OE-PCR <br/> without <br/> backbone</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Weak product <br/>band</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>PCR<br/> purification</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gradient <br/>PCR</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No product</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>OE-PCR <br/>with <br/> backbone</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform<br/> into TOP10</p> | ||
+ | <td class="red arrow" > | ||
+ | <p>Red colonies</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>NEBuilder <br/> protocol</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Screen with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Send for <br/>sequencing</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Violacein Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR purification<br/>for VioA <br/>2nd PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Stored<br/> in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p>PCR purification <br/> for BglX <br/> 2nd PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Stored <br/>in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amph protein</h3></div></td> | ||
+ | <td class="white arrow"> | ||
+ | <p style="font-size:12px">Gradient PCR <br/> P044&P045, P046&P051, <br/> P045&P046</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Extract & <br/> purify from gel<br/> P044&P045</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>DNA <br/>not clean</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Store <br/>in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p style="font-size:12px">Stored P046&P051 <br/>and P045&P046 <br/>product gels <br/>to +4°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP protein</h3></div></td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p>Gradient PCR <br/>with <br/>P028&P029</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>PCR<br/> purification</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane <span style="font-size:20px">Measurement</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture <br/>of Pauli's <br/>propane strain</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Propane measurement</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No propane <br/>detected</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/a/a9/Aalto-Helsinki_week12.pdf" target="_blank">here</a> to read the full lab notes of week 12.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 12 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 13 below --> | ||
+ | <section id="week13" data-anchor="week13"> | ||
+ | |||
+ | <h2>Week 13</h2> | ||
+ | |||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>August 10th -<br/> August 14th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amphiphilic Protein <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>PCR amph <br/> with P044&P045</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No product</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gradient <br/>PCR</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No product</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Continue with <br/>last week's <br/>product</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amph with Linker <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td></td><td></td> | ||
+ | <td class="blueup arrow" > | ||
+ | <p>Colony PCR <br/>amph with<br/> P045&P046</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>O/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/>check <br/>on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="blue arrow" > | ||
+ | <p style="font-size:12px">Extract & purify <br/>Amph P046&P051 <br/>and P045&P046 <br/>from gel</p> | ||
+ | <td class="white arrow" > | ||
+ | <p>Assemble both <br/>into pSB1C3 <br/>backbone</p> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amph no term <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td></td><td></td> | ||
+ | <td class="bluedown arrow" > | ||
+ | <p>Colony PCR <br/>amph with<br/> P046&P051</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>O/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/>check <br/>on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <span style="font-size:20px">Backbones</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict AH043</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Stored <br/> in -20°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP & Amph Bricks <br/><span style="font-size:20px">Assembly</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Restrict & <br/>ligate GFP and<br/> Amph into AH009</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Screen with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Check on <br/>gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Send for <br/>sequencing</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2 <span style="font-size:20px">Assembly</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>NEBuilder <br/>protocol</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Screen with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-do NEBuilder <br/> and transfrom <br/> to TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Screen with <br/> colony PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture of <br/>one potential <br/>colony</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>o/n culture <br/>turned red</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>ELIC protocol</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No colonies</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px">Assembly</span></h3></div></td> | ||
+ | <td class="white arrow"> | ||
+ | <p style="font-size:12px">NEBuilder protocol <br/> and transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Screen with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | <td class="red arrow"> | ||
+ | <p>Mistake in <br/> protocol</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>Re-do NEBuilder <br/> and transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow"> | ||
+ | <p>Screen with <br/> colony PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow"> | ||
+ | <p>o/n cultures and <br/>MiniPrep of <br/>white colonies</p> | ||
+ | </td> | ||
+ | <td class="red arrow"> | ||
+ | <p>Restrict & <br/>check on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow"> | ||
+ | <p>ELIC <br/>protocol</p> | ||
+ | </td> | ||
+ | <td class="blue arrow"> | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | <td class="white arrow" > | ||
+ | <p>Screen with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Mistake in <br/>protocol</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Re-do ELIC <br/> and transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Screen with <br/> colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP Brick <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | |||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict AH013, <br/>AH015 & AH007</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Ligate AH007, <br/>AH013 & GFP</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>RT over <br/> weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | </td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Ligate AH007, <br/>AH015 & GFP</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>RT over <br/> weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/0/03/Aalto-Helsinki_week13.pdf" target="_blank">here</a> to read the full lab notes of week 13.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 13 above --> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- Week 14 below --> | ||
+ | <section id="week14" data-anchor="week14"> | ||
− | |||
− | |||
− | |||
− | |||
− | |||
<h2 id="week14">Week 14</h2> | <h2 id="week14">Week 14</h2> | ||
+ | |||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>August 17th -<br/> August 21st</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Preparations <br/> <span style="font-size:20px">Propagations</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>AH045 into <br/>TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <span style="font-size:20px">Assembly</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/> ligate CAR <br/>into AH009</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict & <br/> check on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="red arrow" > | ||
+ | <p style:"font-size:12px">Sequencing of <br/>Propane Plasmid 1 <br/>unsuccessful</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Send construct in AH009 for sequencing</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into <br/>Pauli's <br/> BL21(DE3)</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amphiphilic Propane 1</h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Gradient PCR <br/>for CAR amph <br/> parts</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>CAR amph3 <br/>purified <br/> from gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"></div></td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p>PCR purification <br/> for CAR <br/> amph4</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2<br/> <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>OE-PCR</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No product</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Check old <br/>NEBuilders<br/> on gel</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Re-transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n cultures of <br/>colorless <br/>colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Restrict & <br/> check <br/> on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px"> Construction </span></h3></div></td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p>OE-PCR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Extract & <br/> purify <br/> from gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Concentration too low</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td> | ||
+ | </td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p>PCR <br/>purification</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>NEBuilder with AH009</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into <br/>NEB5alpha <br/> over weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Check old <br/>NEBuilder <br/>on gel</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Re-transform into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>o/n of colorless <br/> colonies</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Restrict & <br/> check <br/>on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP <span <style="font-size:20px"> Assembly</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow"> | ||
+ | <p style="font-size:12px">2A assembly for <br/>AH013/AH015,<br/>GFP & pSB1C3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Colonies can’t <br/>be separated</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>3A assembly <br/>into pSB1T3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No colonies</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow"> | ||
+ | <p>Propagate GFP in AH009</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Send to Slovenia</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/e/e3/Aalto-Helsinki_week14.pdf" target="_blank">here</a> to read the full lab notes of week 14.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 14 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 15 below --> | ||
+ | <section id="week15" data-anchor="week15"> | ||
+ | |||
<h2 id="week15">Week 15</h2> | <h2 id="week15">Week 15</h2> | ||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>August 24th -<br/> August 28th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <br/> <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Prepare <br/>SDS-PAGE <br/>samples</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Unclear <br/>results</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Analytical <br/> restriction</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Wrong sized <br/>bands</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Prepared <br/>cells for <br/>purpald test</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Stored <br/>in -70°C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2<br/> <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Repeat <br/>NEBuilder</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | |||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Repeat <br/>NEBuilder <br/>with AH009</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP Biobrick <span style="font-size:20px"> Assembly</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>3A Assemble <br/>GFP + AH045 <br/>in pSB1K3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>O/n cultues</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Restrict &<br/> Check <br/>on gel</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>2A Assembly <br/> GFP + AH045 in pSB1K3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p style="color:white">Store in +4 °C</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP+Amph <span style="font-size:20px">Assembly</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">3A Assemble <br/>AH045-GFP + <br/>amphlinker in pSB1A3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/> into TOP10 <br/> over weekend</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Repeat <br/>NEBuilder</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Repeat <br/>NEBuilder <br/> with AH009</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amphiphilic Propane1</h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>NEBuilder</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td></td> | ||
+ | <td class="whitedown arrow" > | ||
+ | <p>O/n culture</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/e/ec/Aalto-Helsinki_week15.pdf" target="_blank">here</a> to read the full lab notes of week 15.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 15 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 16 below --> | ||
+ | <section id="week16" data-anchor="week16"> | ||
+ | |||
<h2 id="week16">Week 16</h2> | <h2 id="week16">Week 16</h2> | ||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>August 31st -<br/> September 4th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <br/> <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>New <br/>SDS-PAGE</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p style="color:white">Unclear </br>results</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2<br/> <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture <br/>of NEBuilder <br/>colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/>check <br/>on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No insert</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Screen more <br/>colonies with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture <br/>of NEBuilder <br/>colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/>check <br/>on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No insert</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Screen more <br/>colonies with <br/>colony PCR</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amph Propane 1<span style="font-size:20px"> Construction </span></h3></div></td> | ||
+ | |||
+ | <td class="red arrow" > | ||
+ | <p>Restrict & <br/> check <br/> on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-do <br/>NEBuilder</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into <br/>NEB5alpha</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>O/n cultures</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP Amph <span style="font-size:20px"> Assembly </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>O/n cultures</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Restrict & <br/> check<br/> on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>O/n cultures <br/>of more <br/> colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep, restrict<br/> & check<br/> on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Prepare samples<br/> for microscopy</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Problem with<br/> imaging</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amphiphilic Brick <span style="font-size:20px"> Assembly</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>PCR purification</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>3A assemble <br/>AH045 + Amph<br/> in pSB1C3</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>O/n cultures & MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Restrict &<br/> Check <br/>on gel</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>More o/n cultures & MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict &<br/> Check on gel,<br/> results unclear</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/b/b1/Aalto-Helsinki_week16.pdf" target="_blank">here</a> to read the full lab notes of week 16.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 16 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 17 below --> | ||
+ | <section id="week17" data-anchor="week17"> | ||
+ | |||
<h2 id="week17">Week 17</h2> | <h2 id="week17">Week 17</h2> | ||
+ | <table > | ||
+ | <tr> | ||
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>September 7th -<br/> September 11th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <br/> <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Colony PCR <br/>with <br/>P001 & VR</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Results <br/>next week</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2<br/> <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture <br/>of NEBuilder <br/>colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/>check <br/>on gel</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>AtoB maybe<br/> OK</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/>check on <br/>gel again</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Unclear results</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Colony PCR,<br/> results <br/>next week</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Cellulose Plasmid <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>o/n culture <br/>of NEBuilder <br/>colonies</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/>check <br/>on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No insert</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Due to the time <br/>constraint, the <br/>construction is<br/> not repeated</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amph Propane 1<span style="font-size:20px"> Construction </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/> check <br/> on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Incorrect size</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p style="font-size:12px">Due to the time <br/>constraint, the <br/>construction is<br/> not repeated</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP Amph <span style="font-size:20px"> Assembly </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/> check on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Incorrect size</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-assemble</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>GFP not <br/>expressed</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform old <br/>ligation mix <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>GFP not <br/>expressed</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3><span style="font-size:20px"> Validation </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Imaged with<br/> fluorescent <br/>microscope</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow"> | ||
+ | <p>O/w culture<br/> for microscopy</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amphiphilic Brick <span style="font-size:20px"> Assembly </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Restrict & <br/> check on gel</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Incorrect size</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-assemble</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/> into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>O/n cultures</p> | ||
+ | </td> | ||
+ | |||
+ | <td class="blue arrow" > | ||
+ | <p>MiniPrep</p> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | <td class="white arrow"> | ||
+ | <p>O/w culture<br/> for microscopy</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | |||
+ | </table> | ||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/2/27/Aalto-Helsinki_week17.pdf" target="_blank">here</a> to read the full lab notes of week 17.</p></div> | ||
+ | |||
+ | </section> | ||
+ | <!-- Week 17 above --> | ||
+ | |||
+ | |||
+ | <!-- Week 18 below --> | ||
+ | <section id="week18" data-anchor="week18"> | ||
+ | |||
<h2 id="week18">Week 18</h2> | <h2 id="week18">Week 18</h2> | ||
− | </div></div></div></body> <!--These are the closing tags for div id="mainContainer" and div id="contentContainer". The corresponding opening tags appear in the template that is {{included}} at the top of this page.--> | + | <table > |
− | </html> | + | <tr> |
+ | <td class="bottomline rightline first"><h3 style="padding-top:0;margin-top:0;margin-bottom:0;padding-bottom:0;">Worked With</h3></td> | ||
+ | <td class="bottomline"><h3>WorkFlow</h3></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"></td> | ||
+ | <td class="bottomline"><h3>September 14th -<br/> September 18th</h3></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 1 <br/> <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Checking <br/>colony PCR <br/>results</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Propane Plasmid 2<br/> <span style="font-size:20px">Construction</span></h3></div></td> | ||
+ | |||
+ | <td class="red arrow" > | ||
+ | <p>Checking <br/> colony PCR <br/>results</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdivlow"><h3></h3></div></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP <span style="font-size:20px">Validation </span></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Assembling <br/>AH046</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restriction<br/> and ligation</p> | ||
+ | </td> | ||
+ | <td class="blue arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>No blue <br/> colonies</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Re-assembling</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform<br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No blue <br/> colonies</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p>Assembling <br/>AH047</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Restriction<br/> and ligation</p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Transform <br/>into TOP10</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>No blue <br/> colonies</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>GFP & Amph <span style="font-size:20px">Validation</span></h3></div></td> | ||
+ | |||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p <span style="font-size:12px">Prepare samples <br/>for confocal <br/>microscope</span></p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Pictures <br/>taken by <br/>VTT</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Amphiphilic <br/>structures<br/> not detected</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3></h3></div></td> | ||
+ | |||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td class="bluedown arrow" > | ||
+ | <p>GFP <br/>expression</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td class="first rightline"><div class="heightdiv"><h3>Amph Brick<span style="font-size:20px"></br>Validation</span></h3></div></td> | ||
+ | |||
+ | |||
+ | <td class="white arrow" > | ||
+ | <p <span style="font-size:12px">Prepare samples <br/>for confocal <br/>microscope</span></p> | ||
+ | </td> | ||
+ | <td class="white arrow" > | ||
+ | <p>Pictures <br/>taken by <br/>VTT</p> | ||
+ | </td> | ||
+ | <td class="red arrow" > | ||
+ | <p>Amphiphilic <br/>structures <br/>not detected</p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | |||
+ | |||
+ | </table> | ||
+ | |||
+ | |||
+ | <div class="inner-container" style="margin: 5% 20% 5% 25%;"> | ||
+ | <p style="font-size:16px">Click <a href="https://static.igem.org/mediawiki/2015/f/fc/Aalto-Helsinki_week18.pdf" target="_blank">here</a> to read the full lab notes of week 18.</p></div> | ||
+ | |||
+ | |||
+ | |||
+ | </section> | ||
+ | <!-- Week 18 above --> | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | <p style="margin-bottom:0;padding-bottom:10%;"></p> | ||
+ | </div><!-- Background end--> | ||
+ | </div></div></body> <!--These are the closing tags for div id="mainContainer" and div id="contentContainer". The corresponding opening tags appear in the template that is {{included}} at the top of this page.--> | ||
+ | <!-- The next starting p is to get rid of the annoying gap at the bottom of the page. There is a closing /p at some kind of ready footer, that can be seen when looking at the page source --><p style="margin:0;"> | ||
+ | |||
+ | |||
+ | |||
+ | <!-- here scripts to make the site navigation beautiful and responsive. --> | ||
+ | <!-- NOTE: if you copy this script to other pages you'll likely have to modify it to have .inner-container instead of .plasmids in the lower function!! --> | ||
+ | <script> | ||
+ | |||
+ | $('#sidenav a').on('click', function() { | ||
+ | |||
+ | var scrollAnchor = $(this).attr('data-scroll'), | ||
+ | scrollPoint = $('section[data-anchor="' + scrollAnchor + '"]').offset().top - 28; | ||
+ | |||
+ | $('body,html').animate({ | ||
+ | scrollTop: scrollPoint | ||
+ | }, 500); | ||
+ | |||
+ | return false; | ||
+ | |||
+ | }) | ||
+ | |||
+ | |||
+ | $(window).scroll(function() { | ||
+ | var windscroll = $(window).scrollTop(); | ||
+ | if (windscroll >= 100) { | ||
+ | $('.plasmids section').each(function(i) { | ||
+ | if ($(this).position().top <= windscroll + 140) { | ||
+ | $('#sidenav a.active').removeClass('active'); | ||
+ | $('#sidenav a').eq(i).addClass('active'); | ||
+ | } | ||
+ | }); | ||
+ | |||
+ | } else { | ||
+ | |||
+ | $('#sidenav a.active').removeClass('active'); | ||
+ | $('#sidenav a:first').addClass('active'); | ||
+ | } | ||
+ | |||
+ | }).scroll(); | ||
+ | |||
+ | </script> |
Latest revision as of 04:29, 29 October 2015