Difference between revisions of "Team:Aalto-Helsinki/Attributions"
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<h2>Project support and advice</h2> | <h2>Project support and advice</h2> | ||
− | <p>Our project is in large part based on two publications about propane production in E. coli.</p> | + | <p>Our project is in large part based on two publications about propane production in <i>E. coli</i>.</p> |
− | <p>Kallio | + | <p><a href="http://www.nature.com/ncomms/2014/140902/ncomms5731/full/ncomms5731.html target="_blank">Kallio <i>et al.</i> An engineered pathway for the biosynthesis of renewable propane.</a></p> |
− | <p>Menon | + | <p><a href ="http://www.biotechnologyforbiofuels.com/content/8/1/61" target="_blank">Menon <i>et al.</i> A microbial platform for renewable propane synthesis based on a fermentative butanol pathway.</a></p> |
<p>Professor <b>Pauli Kallio</b> and Dr. <b>András Pásztor</b> have provided us with valuable advice about the propane pathway and its construction.</p> | <p>Professor <b>Pauli Kallio</b> and Dr. <b>András Pásztor</b> have provided us with valuable advice about the propane pathway and its construction.</p> | ||
− | <p>Our amphiphilic proteins are derived from the study | + | <p>Our amphiphilic proteins are derived from the study</p> |
− | <p> | + | <p><a href="http://www.nature.com/nmat/journal/v14/n1/full/nmat4118.html" target="_blank">Huber <i>et al.</i> Designer amphiphilic proteins as building blocks for the intracellular formation of organelle-like compartments.</a></p> |
<p>Our advisor professor <b>Markus Linder</b> has given us valuable feedback on our ideas and general input on our development. Doctor <b>Jussi Jäntti</b> and other researchers from VTT gave help with expanding our idea and building our story.</p> | <p>Our advisor professor <b>Markus Linder</b> has given us valuable feedback on our ideas and general input on our development. Doctor <b>Jussi Jäntti</b> and other researchers from VTT gave help with expanding our idea and building our story.</p> | ||
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<!-- Lab support --> | <!-- Lab support --> | ||
<h2>Lab support<h2> | <h2>Lab support<h2> | ||
− | <p><b>Aalto University</b> and our advisor <b>Markus Linder</b> provided us with lab spaces, equipment and resources for | + | <p><b>Aalto University</b> and our advisor <b>Markus Linder</b> provided us with lab spaces, equipment and resources for lab work. Also the rest of his group has given us good advice while working in the lab this summer. <b>Martina Ikonen</b> and <b>Minttu Salmela</b> from last year’s team gave us good tips on lab work and helped us design our primers.</p> |
<p><b>Heli Viskari</b> helped us with practicalities in the lab and took care of our orders. She also helped us with designing primers.</p> | <p><b>Heli Viskari</b> helped us with practicalities in the lab and took care of our orders. She also helped us with designing primers.</p> | ||
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<p><b>Jussi Jäntti</b> from VTT helped us with choosing a linker sequence and told us about the amphiphilic proteins.</p> | <p><b>Jussi Jäntti</b> from VTT helped us with choosing a linker sequence and told us about the amphiphilic proteins.</p> | ||
+ | |||
+ | <p><b>Ritva Heinonen</b> from VTT helped us to analyze micelle formation with confocal microscopy.</p> | ||
<p><b>Dominik Mojzita</b> from VTT introduced us to the Gibson Assembly method.</p> | <p><b>Dominik Mojzita</b> from VTT introduced us to the Gibson Assembly method.</p> | ||
<p><b>Anja Martinez</b> from Thermo Fisher helped us optimize our genes for synthesis.</p> | <p><b>Anja Martinez</b> from Thermo Fisher helped us optimize our genes for synthesis.</p> | ||
+ | |||
+ | <p><b>Jorg de Ruijter</b> from Markus' group helped with practicalities in the lab during the summer and teached us how to do an SDS-PAGE.</p> | ||
+ | |||
+ | <p><b>Sami Havukainen</b> helped with Gibson assembly and continuous production measurements</p> | ||
+ | |||
+ | <p><b>Christopher Jonkergouw</b> from Markus' group helped us to confirm GFP transformation with fluorescence microscopy.</p> | ||
<p>Rest of Markus' lab group helped us with practicalities in the lab.</p> | <p>Rest of Markus' lab group helped us with practicalities in the lab.</p> | ||
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<p><b>Pekka Heino</b> and <b>Tapio Palva</b> gave us some insights on cellulose degradation and pointed out some possible flaws in our system so we were able to do more research and fix them. Pekka Heino also gave some suggestions on the practicalities regarding wet lab work.</p> | <p><b>Pekka Heino</b> and <b>Tapio Palva</b> gave us some insights on cellulose degradation and pointed out some possible flaws in our system so we were able to do more research and fix them. Pekka Heino also gave some suggestions on the practicalities regarding wet lab work.</p> | ||
+ | <p><b>Auli Murrola</b> ran our liquid chromatography analysis for all the glucose samples, evaluated the values and created standards for them.</p> | ||
− | <p><b>Janne Wallenius</b> helped us set up our continuous production and gave advice and estimates on good parameters to use for it.</p> | + | <p><b>Janne Wallenius</b> helped us set up and maintain our continuous production, and gave advice and estimates on good parameters to use for it.</p> |
<!-- Lab end --> | <!-- Lab end --> | ||
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<p><b>Elena Czeizler</b> from Aalto University gave us insights on what to use for modeling and how to proceed with it.</p> | <p><b>Elena Czeizler</b> from Aalto University gave us insights on what to use for modeling and how to proceed with it.</p> | ||
− | <p><b>Anna-Liisa Ruskeepää</b> from VTT ran our GC-analysis for all the propane samples and created standards for them. Furthermore, she gave some advice for analysis.</p> | + | <p><b>Marja Ilmen</b> from VTT made arrangements for GC-analysis.</p> |
+ | |||
+ | <p><b>Anna-Liisa Ruskeepää</b> from VTT ran our GC-analysis for all the propane samples, evaluated the values and created standards for them. Furthermore, she gave some advice for analysis.</p> | ||
<p><b>Antti Rantasalo</b> from VTT and our avisor <b>Heli Viskari</b> helped us with our construct design.</p> | <p><b>Antti Rantasalo</b> from VTT and our avisor <b>Heli Viskari</b> helped us with our construct design.</p> | ||
+ | |||
+ | <p><b>Tuulikki Seppänen-Laakso</b> from VTT made arrangements for GC-analysis.</p> | ||
<!-- Difficult technique end --> | <!-- Difficult technique end --> | ||
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<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
<p><a href="http://chem.aalto.fi/en/about/" target="_blank">The Aalto University School of Chemical Technology</a> combines natural sciences and engineering in a unique way. The school aims for high co-operation with the business world and Finnish industry.</p> | <p><a href="http://chem.aalto.fi/en/about/" target="_blank">The Aalto University School of Chemical Technology</a> combines natural sciences and engineering in a unique way. The school aims for high co-operation with the business world and Finnish industry.</p> | ||
− | <p>Aalto University School of Chemical Technology has been a very important partner in our project. They provided us with lab space, required reagents and equipment to | + | <p>Aalto University School of Chemical Technology has been a very important partner in our project. They provided us with lab space, required reagents and equipment to test propane production. Additionally, we got valuable knowledge from professors and the lab team around us whenever we ran into problems. The School of Chemical Technology also supported us financially.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
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</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="https://www.helsinki.fi/en" target="_blank">The University of Helsinki</a> is the oldest and largest university in Finland and one of the leading multidisciplinary universities in the world. They concentrate on high quality scientific research and research education which form the basis of their teaching. The University of Helsinki also supports education and scholarship in the community with its wide contact network.</p> | + | <p><a href="https://www.helsinki.fi/en" target="_blank" style="padding:0">The University of Helsinki</a> is the oldest and largest university in Finland and one of the leading multidisciplinary universities in the world. They concentrate on high quality scientific research and research education which form the basis of their teaching. The University of Helsinki also supports education and scholarship in the community with its wide contact network.</p> |
<p>University of Helsinki supported us financially and offered group work spaces for us.</p> | <p>University of Helsinki supported us financially and offered group work spaces for us.</p> | ||
</div> | </div> | ||
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<p>Together with the other units at the Viikki Campus, the <a href="http://www.helsinki.fi/bio/faculty/" target="_blank">Faculty of Biological and Environmental Sciences</a> forms Finland’s most prominent and, by volume, largest cluster in research and education in the biosciences. They focus in high-level international research and creating functional framework for teaching and research in the fields of biosciences and the environment and for their societal influence and interaction.</p> | <p>Together with the other units at the Viikki Campus, the <a href="http://www.helsinki.fi/bio/faculty/" target="_blank">Faculty of Biological and Environmental Sciences</a> forms Finland’s most prominent and, by volume, largest cluster in research and education in the biosciences. They focus in high-level international research and creating functional framework for teaching and research in the fields of biosciences and the environment and for their societal influence and interaction.</p> | ||
<p>University of Helsinki Faculty of Biological and Environmental Sciences supported us financially and provided us with assistance from their professors.</p> | <p>University of Helsinki Faculty of Biological and Environmental Sciences supported us financially and provided us with assistance from their professors.</p> | ||
+ | </div> | ||
+ | </div><!-- end row --> | ||
+ | |||
+ | <!-- Stora Enso --> | ||
+ | <div class="row" > | ||
+ | <div class="col-xs-12 col-md-3 " > | ||
+ | <a href="http://www.storaenso.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/a/a1/Aalto-Helsinki_sponsorlogo_storaenso.jpeg" style = "max-width:100%; | ||
+ | max-height:100%;" /></a> | ||
+ | </div> | ||
+ | <div class="col-xs-12 col-md-9 "> | ||
+ | <p><a href="http://www.storaenso.com/" target="_blank">Stora Enso</a> is Finnish forest industry company and one of the worlds largest pulp and paper manufacturer. They have long expertise with wood industry and are currently focusing on transforming from traditional paper production into renewable materials growth company. "Do good for the People and the Planet" is their new motto.</p> | ||
+ | <p>Stora Enso supported us financially and were very enthusiastic about our project.</p> | ||
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
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</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- AYY --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href=" | + | <a href="http://ayy.fi/en/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/b/b8/Aalto-Helsinki_sponsorlogo_AYY.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href=" | + | <p><a href="http://ayy.fi/en/" target="_blank">Aalto University Student Union</a> gives students of the Aalto University housing, guidance services and represent student rights. They also host all kinds of events and fund student projects to keep the community innovative. The union was formed from the former student unions of Helsinki School of Economics, University of Art and Design Helsinki and Helsinki University of Technology</p> |
− | <p> | + | <p>Aalto University Student Union supported our project financially.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- LAL --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http:// | + | <a href="http://www.luonnontieteilijat.fi/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/6/66/Aalto-Helsinki_sponsor_logo_lal.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http:// | + | <p><a href="http://www.luonnontieteilijat.fi/" target="_blank">LAL, the Finnish Union of Experts in Science</a> is a union for people with higher degrees in different sciences. LAL has over 7900 members and aims to protect the financial, social and professional interests of it's members.</p> |
− | <p> | + | <p>LAL helped us financially.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | |
+ | <!-- IBC Finland --> | ||
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http:// | + | <a href="http://www.ibcfinland.fi/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/6/65/Aalto-Helsinki_sponsorlogo_IBCFinland.jpg" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | + | <a href="http://www.ibcfinland.fi/" target="_blank"><p>Industrial Biotechnology Cluster Finland</a> promotes sustainability and bioeconomy in the Finnish industry. They both connect and start projects between companies and research institutes for creating new solutions and products in the field in Finland as well as abroad.</p> | |
− | <p> | + | <p>IBC Finland supported us financially.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | |
+ | <!-- NEB --> | ||
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href=" | + | <a href="http://neb.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/f/f5/Aalto-Helsinki_neb_logo.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="https:// | + | <p><a href="https://neb.com/" target="_blank" style="padding:0">New England Biolabs (NEB)</a> is a major provider of native and recombinant enzymes for life science research. NEB is also a long-standing supporter of iGEM teams. Currently supplying over 276 restriction enzymes, NEB product catalog also includes products related to PCR, gene expression, cellular analysis, RNA analysis and epigenetics. </p> |
− | <p> | + | <p>NEB donated our team laboratory materials, significantly helping us with our efforts in the laboratory. </p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | |
+ | <!-- IDT --> | ||
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href=" | + | <a href="https://www.idtdna.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/4/46/Aalto-Helsinki_IDT_logo.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <a href=" | + | <p><a href="https://www.idtdna.com/" target="_blank" style="padding:0">Integrated DNA Technologies</a> mainly provides DNA and oligonucleotide synthesis services. They are the largest custom oligo producer in the US with customers ranging from small research groups to big pharmaceutical companies. </p> |
− | <p> | + | <p>IDT provided us with 20k base pairs of free DNA synthesis services.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- HYY --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http:// | + | <a href="http://hyy.helsinki.fi/en" target="_blank"><img src="https://static.igem.org/mediawiki/2015/d/dc/Aalto-Helsinki_sponsorlogo_HYY.jpg" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http:// | + | <p><a href="http://hyy.helsinki.fi/en" target="_blank">The Student Union of the University of Helsinki</a> provides the students of the University of Helsinki with guidance services and interest representation as well as great discounts. HYY is the oldest student union in Finland and had a big part in creating many of the present traditions.</p> |
− | <p> | + | <p>The Student Union of the University of Helsinki supported us financially.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- Flowdock --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href=" | + | <a href="https://www.flowdock.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/c/cf/Aalto-Helsinki_sponsorlogo_flowdock.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href=" | + | <p><a href="https://www.flowdock.com/" target="_blank" style="padding:0">Flowdock</a> is a team collaboration app for desktop, mobile & web. Work on things that matter, be transparent and solve problems across tools, teams & time zones.</p> |
− | <p> | + | <p>Flowdock provided us with licenses to their software, which we used as our main communication platform. It combines file sharing, chats for different areas and integration of team email and Twitter and much more. Notifications make sure you can reach all the people needed and not bother others!</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- Geneious --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http:// | + | <a href="http://geneious.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/b/b6/Geneious_logo.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http:// | + | <p><a href="http://geneious.com/" target="_blank">Geneious</a> is the world’s leading bioinformatics software platform used by over 2500 universities and institutes, and commercial companies in more than 65 countries. It also supports user-made plugins to customize your user experience and speed up the workflow.</p> |
− | <p> | + | <p>Geneious provided us with software licenses for the duration of the project.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | |
+ | <!-- Kemianteollisuus --> | ||
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http:// | + | <a href="http://www.kemianteollisuus.fi/en/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/5/5f/Aalto-Helsinki_sponsorlogo_kemianteollisuus.jpg" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http:// | + | <p><a href="http://www.kemianteollisuus.fi/en/" target="_blank">The Chemical Industry Federation of Finland</a> is a trade association for the chemical industry and its closely related sectors, covering various fields in the basic and production chemical industry. They actively promote the competitiveness and operational preconditions of its members in Finland.</p> |
− | <p> | + | <p>While they are not actually related to biotechnology, they still supported us financially and invited us to their workshop.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- Ratekoulutus --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http:// | + | <a href="http://ratekoulutus.fi/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/3/32/Aalto-Helsinki_sponsorlogo_Ratekoulutus.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http:// | + | <p><a href="http://ratekoulutus.fi/" target="_blank">Ratekoulutus</a> is a Finnish service that provides high quality courses and seminars for customized needs in various fields. Their course emphasize life long learning and networking.</p> |
− | + | <p>Ratekoulutus supported us financially.</p> | |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | <!-- | + | <!-- Genscript --> |
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http://www. | + | <a href="http://www.genscript.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/e/ee/Aalto-Helsinki_sponsorlogo_Genscript.gif" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http://www. | + | <p><a href="http://www.genscript.com/" target="_blank">Genscript</a> provides innovative services and products to bypass the laborious steps of research. They provide gene synthesis, peptide, protein, antibody and discovery biology service capabilities and are internationally recognized as a leading Contract Research Organization (CRO) specializing in biological research and early-phase drug discovery services.</p> |
− | <p> | + | <p>Genescript provided us with credit to use for their synthesis services, helping us create the constructs needed for our pathway.</p> |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
− | + | <!-- Grano --> | |
− | <!-- | + | |
− | + | ||
− | + | ||
<div class="row" > | <div class="row" > | ||
<div class="col-xs-12 col-md-3 " > | <div class="col-xs-12 col-md-3 " > | ||
− | <a href="http://www. | + | <a href="http://www.grano.fi/" target="_blank"><img src="https://static.igem.org/mediawiki/2015/b/b8/Aalto-Helsinki_sponsorgrano.png" style = "max-width:100%; |
max-height:100%;" /></a> | max-height:100%;" /></a> | ||
</div> | </div> | ||
<div class="col-xs-12 col-md-9 "> | <div class="col-xs-12 col-md-9 "> | ||
− | <p><a href="http://www. | + | <p><a href="http://www.grano.fi/" target="_blank">Grano</a> produces digi- and print services, products, marketing and solutions in three countries. They have a huge range of possibilities, from house sized banners to small stickers. Grano has extensive environment policy and aims to create sustainable products and services for everyone.</p> |
− | + | <p>Grano is sponsoring our poster printing.</p> | |
</div> | </div> | ||
</div><!-- end row --> | </div><!-- end row --> | ||
+ | |||
</section> | </section> |
Latest revision as of 04:49, 29 October 2015