Difference between revisions of "Team:Uppsala/Parts"

(Prototype team page)
 
 
(31 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
{{Uppsala}}
+
<!--
−
<html>
+
<head>
  
−
<h2> Part Documentation</h2>
+
<style>
  
−
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
+
body {
−
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
+
background-color: #FFFFFF;
 +
}
  
 +
#main {
 +
background-color: #FFFFFF;
 +
margin-left:auto;
 +
margin-right:auto;
 +
width:1100px;
 +
padding: 5px;
 +
}
  
−
<div class="highlightBox">
+
.header {
−
<h4>Note</h4>
+
font-family:"Trebuchet MS", Helvetica;
−
<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
+
color: #FF3300;
−
</div>
+
text-shadow: 2px 2px 5px #888888;
 +
border: none;
 +
}
  
 +
#home_image {
 +
  margin: 0 auto;
 +
  display: block;
 +
  padding: 15px 0;
 +
}
  
 +
hr {
 +
background-color: #FF3300;
 +
}
  
−
<h4>Adding parts to the registry</h4>
+
p {
−
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
+
font-family:Garamond, "Times New Roman";
−
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
+
font-size: 150%;
 +
}
  
 +
/*CSS for the navbar*/
  
−
<h4>What information do I need to start putting my parts on the Registry?</h4>
+
/*Hide the sub-menus*/
−
<p>The information needed to initially create a part on the Registry is:</p>
+
nav ul ul {
−
<ul>
+
    display: none;
−
<li>Part Name</li>
+
}
−
<li>Part type</li>
+
/*Show the sub-menus when you hover over the bar elements*/
−
<li>Creator</li>
+
nav ul li:hover > ul {
−
<li>Sequence</li>
+
    display: block;
−
<li>Short Description (60 characters on what the DNA does)</li>
+
}
−
<li>Long Description (Longer description of what the DNA does)</li>
+
/*Change of the box around the bar*/
−
<li>Design considerations</li>
+
nav ul {
−
</ul>
+
    background-color: #FFFFFF;
 +
    font-family: "Trebuchet MS";
 +
    color: black;
 +
    text-align: center;
 +
    list-style: none;
 +
    text-transform: uppercase;
 +
    padding: 0 15px;
 +
    display: inline-table;       
 +
}
 +
nav > ul {
 +
    margin-top: 0px;
 +
    margin-left: auto;
 +
    margin-right: auto;
 +
}
 +
nav ul li {
 +
    float: left;
 +
}
  
−
<p>
+
/*Only affects links in the first ul, the bar*/
−
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
+
nav ul li:hover > a {
 +
    color: #CC0000;
 +
    text-decoration: none;
 +
    border-bottom: 2px solid #CC0000;
 +
    opacity: 1;
 +
}
  
 +
/* Change of link text in the bar*/
 +
nav ul li a {
 +
    display: block;
 +
    padding: 10px 15px 0px 15px;
 +
}
 +
/*List of sub-menus*/
 +
nav ul ul {
 +
    background-color: #FFFFFF;
 +
    border-radius: 10px;
 +
    padding: 0px;
 +
    box-shadow: 0px 1px 1px 1px;
 +
    margin-top: 0px;
 +
    position: absolute;
 +
    top: 100%;
 +
}
 +
/*The individual sub-menu elements*/
 +
nav ul ul li {
 +
    float: none;
 +
    border-radius: 5px;
 +
    position: relative;
 +
}
 +
/*The individual link texts in the sub-menus*/
 +
nav ul ul li a {
 +
    padding: 0px 5px 5px 5px;
 +
}
  
 +
nav ul ul li a:hover {
 +
    /*background: #4b545f;*/
 +
    border: none;
 +
}
  
  
  
 +
/*Supposed to make the navigation bar fixed up top*/
 +
.fixed {
 +
  position: fixed;
 +
  top: 0;
 +
  right: 0;
 +
  left: 0;
 +
  margin: auto;
 +
  margin-top: 15px;
 +
}
  
−
<h4>Inspiration</h4>
+
#full_width {
−
<p>We have a created a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
  width:100%;
 +
}
  
−
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
+
/*End of CSS for the navbar*/
−
<ul>
+
−
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
−
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
−
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
−
</ul>
+
  
 +
/*Reset of the wiki default settings*/
 +
#contentSub, #footer-box, #catlinks, #search-controls, #p-logo, .printfooter, .firstHeading,.visualClear {display: none;} /*-- hides default wiki settings --*/
  
 +
#top-section { /*-- styling for default menu bar (edit, page, history, etc.) --*/
 +
 +
border: 0 none;
 +
height: 14px;
 +
z-index: 100;
 +
top: 0;
 +
position: fixed;
 +
width: 975px;
 +
left: 50%;
 +
margin-left: -487px;
 +
}
  
−
<h4>Part Table </h4>
+
#globalWrapper { /*-- changes default wiki settings --*/
−
</html>
+
width: 100%;
−
<groupparts>iGEM015 Example</groupparts>
+
height: 100%;
 +
border: 0px;
 +
background-color: transparent;
 +
margin: 0px;
 +
padding: 0px;
 +
}
 +
 
 +
#content {
 +
background-color: #ffffff;     
 +
width: 100%;   
 +
border: 0px;
 +
margin: 0px;
 +
padding-left: 0px; /*should be set to 0 in alt.1) */
 +
padding-right: 0px;
 +
padding-bottom: 0px;       
 +
padding-top: 50px;
 +
}
 +
 
 +
html, .wrapper { /*-- changes default wiki settings --*/
 +
width: 100%;
 +
height: 100%;
 +
background-color: transparent; 
 +
}
 +
/*End of wiki reset*/
 +
 
 +
</style>
 +
 
 +
</head>
 +
<body>
 +
 
 +
<nav class="fixed">
 +
<ul id="full_width">
 +
  <li><a href="https://2015.igem.org/Team:Uppsala">Home</a></li>
 +
  <li><a href="https://2015.igem.org/Team:Uppsala/Team">Team</a></li>
 +
  <li><a href="#">Project</a>
 +
      <ul>
 +
    <li><a href="https://2015.igem.org/Team:Uppsala/Description">Description</a></li>
 +
    <li><a href="https://2015.igem.org/Team:Uppsala/Results">Results</a></li> 
 +
    <li><a href="https://2015.igem.org/Team:Uppsala/Design">Design</a></li>
 +
    <li><a href="https://2015.igem.org/Team:Uppsala/Software">Software</a></li>
 +
      </ul>
 +
  </li>
 +
  <li><a href="#">Parts</a>
 +
      <ul>
 +
      <li><a href="https://2015.igem.org/Team:Uppsala/Parts">Team Parts</a></li>
 +
      <li><a href="https://2015.igem.org/Team:Uppsala/Basic_Part">Basic Parts</a></li> 
 +
      <li><a href="https://2015.igem.org/Team:Uppsala/Composite_Part">Composite Parts</a></li>
 +
      <li><a href="https://2015.igem.org/Team:Uppsala/Part_Collection">Part Collection</a></li> 
 +
      </ul>
 +
  </li>
 +
  <li><a href="https://2015.igem.org/Team:Uppsala/Notebook">Notebook</a>
 +
      <ul>
 +
        <li><a href="https://2015.igem.org/Team:Uppsala/Experiments">Experiments &amp; Protocols</a></li>
 +
        <li><a href="https://2015.igem.org/Team:Uppsala/Calendar">Calendar</a></li>
 +
      </ul>
 +
  </li>
 +
  <li><a href="https://2015.igem.org/Team:Uppsala/Attributions">Attributions</a>
 +
    <ul>
 +
    <li><a href="https://2015.igem.org/Team:Uppsala/Collaborations">Collaborations</a></li>
 +
    <li><a href="https://2015.igem.org/Team:Uppsala/Acknowledgements">Acknowledgements</a></li>
 +
    </ul>
 +
  </li>
 +
  <li><a href="https://2015.igem.org/Team:Uppsala/Practices">Human Practices</a></li>
 +
  <li><a href="https://2015.igem.org/Team:Uppsala/Safety">Safety</a></li>
 +
  <li><a href="https://2015.igem.org/Team:Uppsala/Modeling">Modeling</a></li>
 +
</ul>
 +
</nav>-->
 +
 
 +
{{Uppsala_NewTemplate}}
 
<html>
 
<html>
 +
<head>
 +
<style>
 +
 +
#parts_pic {
 +
margin-top: -56px;
 +
}
 +
 +
#main th, #main td {
 +
border: 1px solid black;
 +
font-family: "Trebuchet MS";
 +
}
 +
 +
#main td {
 +
padding: 5px;
 +
}
  
 +
#main a:hover {
 +
color: #E84243;
 +
}
  
 +
#main table {
 +
width: 100%;
 +
}
 +
</style>
 +
</head>
 +
<body>
 +
    <div id="main">
 +
    <img id="parts_pic" src="https://static.igem.org/mediawiki/2015/1/1b/Uppsala_NewParts2.png" alt="Parts" style="width:1100px">
 +
    <h1 class="header">Parts</h1>
 +
    <hr>
 +
    <table>
 +
      <tr>
 +
      <th>Biobrick Code</th>
 +
      <th>Type</th>
 +
      <th>Length</th>
 +
      <th>Description</th>
 +
      <th>Designers</th>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688000">BBa_K1688000</a></td>
 +
        <td>Coding</td>
 +
        <td>2343 bp</td>
 +
        <td>Mono-rhamnolipid genes (rhlA and rhlB) including RBS and J23101 promoter.</td>
 +
        <td>Biosurfers</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688001">BBa_K1688001</a></td>
 +
        <td>Coding</td>
 +
        <td>2300 bp</td>
 +
        <td>Mono-rhamnolipid genes (rhlA and rhlB) including RBS</td>
 +
        <td>Biosurfers</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688002">BBa_K1688002</a></td>
 +
        <td>Coding</td>
 +
        <td>965 bp</td>
 +
        <td>Mono-rhamnolipid gene rhlA including RBS</td>
 +
        <td>Biosurfers</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688003">BBa_K1688003</a></td>
 +
        <td>Coding</td>
 +
        <td>1327 bp</td>
 +
        <td>Mono-rhamnolipid gene rhlB including RBS</td>
 +
        <td>Biosurfers</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688004">BBa_K1688004</a></td>
 +
        <td>Coding</td>
 +
        <td>726 bp</td>
 +
        <td>An RBS assembled with the dTomato coding sequence, expressing a modified RFP.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688005">BBa_K1688005</a></td>
 +
        <td>Coding</td>
 +
        <td>3810 bp</td>
 +
        <td>The regulatory NahR construct assembled with the coding sequence for dTomato, as well as the coding sequence for the modified laccase.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688006">BBa_K1688006</a></td>
 +
        <td>Coding</td>
 +
        <td>1800 bp</td>
 +
        <td>A modified laccase (D439A/M510L CueO) with N-His6 tag attached to it via a linker sequence and an export tag (HlyA, BBa_K554002) attached to its C-terminus.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688007">BBa_K1688007</a></td>
 +
        <td>Coding</td>
 +
        <td>1843 bp</td>
 +
        <td>A constitutive Anderson promoter assembled with the coding sequence for the modified laccase without an export tag.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688008">BBa_K1688008</a></td>
 +
        <td>Coding</td>
 +
        <td>1651 bp</td>
 +
        <td>A constitutive Anderson promoter assembled with the coding sequence for the modified laccase with an export tag.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688009">BBa_K1688009</a></td>
 +
        <td>Coding</td>
 +
        <td>4977 bp</td>
 +
        <td>The complete degradation construct with the modified laccase. The NahR construct assembled with the dTomato reporter gene, the modified laccase sequence and the sequence of the dioxygenase.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688010">BBa_K1688010</a></td>
 +
        <td>Coding</td>
 +
        <td>769 bp</td>
 +
        <td>A constitutive Anderson promoter assembled with the dTomato reporter gene.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688011">BBa_K1688011</a></td>
 +
        <td>Coding</td>
 +
        <td>769 bp</td>
 +
        <td>A constitutive Anderson promoter assembled with the dTomato reporter gene.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688012">BBa_K1688012</a></td>
 +
        <td>Coding</td>
 +
        <td>2002 bp</td>
 +
        <td>The NahR construct assembled with the dTomato reporter gene.</td>
 +
        <td>Laccalicious</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688013">BBa_K1688013</a></td>
 +
        <td>Coding</td>
 +
        <td>9487 bp</td>
 +
        <td>The naphthalene pathway with the BBa_J23110 promoter and the B0034 RBS</td>
 +
        <td>Nah7</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688014">BBa_K1688014</a></td>
 +
        <td>Coding</td>
 +
        <td>9487 bp</td>
 +
        <td>The naphthalene pathway with the BBa_J23101 promoter and the B0034 RBS</td>
 +
        <td>Nah7</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688017">BBa_K1688017</a></td>
 +
        <td>Coding</td>
 +
        <td>9444 bp</td>
 +
        <td>The naphthalene pathway, with the B0034 RBS and both PstI sites mutagenized</td>
 +
        <td>Nah7</td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="http://parts.igem.org/Part:BBa_K1688015">BBa_K1688015</a></td>
 +
        <td>Coding</td>
 +
        <td>9444 bp</td>
 +
        <td>The naphthalene pathway, with the B0034 RBS.</td>
 +
        <td>Nah7</td>
 +
      </tr>
 +
  </table>
 +
    <hr>
 +
    </div>
  
−
</div>
+
</body>
 
</html>
 
</html>
 +
{{Uppsala_NewFooter}}

Latest revision as of 19:20, 19 November 2015


Parts

Parts

Biobrick Code Type Length Description Designers
BBa_K1688000 Coding 2343 bp Mono-rhamnolipid genes (rhlA and rhlB) including RBS and J23101 promoter. Biosurfers
BBa_K1688001 Coding 2300 bp Mono-rhamnolipid genes (rhlA and rhlB) including RBS Biosurfers
BBa_K1688002 Coding 965 bp Mono-rhamnolipid gene rhlA including RBS Biosurfers
BBa_K1688003 Coding 1327 bp Mono-rhamnolipid gene rhlB including RBS Biosurfers
BBa_K1688004 Coding 726 bp An RBS assembled with the dTomato coding sequence, expressing a modified RFP. Laccalicious
BBa_K1688005 Coding 3810 bp The regulatory NahR construct assembled with the coding sequence for dTomato, as well as the coding sequence for the modified laccase. Laccalicious
BBa_K1688006 Coding 1800 bp A modified laccase (D439A/M510L CueO) with N-His6 tag attached to it via a linker sequence and an export tag (HlyA, BBa_K554002) attached to its C-terminus. Laccalicious
BBa_K1688007 Coding 1843 bp A constitutive Anderson promoter assembled with the coding sequence for the modified laccase without an export tag. Laccalicious
BBa_K1688008 Coding 1651 bp A constitutive Anderson promoter assembled with the coding sequence for the modified laccase with an export tag. Laccalicious
BBa_K1688009 Coding 4977 bp The complete degradation construct with the modified laccase. The NahR construct assembled with the dTomato reporter gene, the modified laccase sequence and the sequence of the dioxygenase. Laccalicious
BBa_K1688010 Coding 769 bp A constitutive Anderson promoter assembled with the dTomato reporter gene. Laccalicious
BBa_K1688011 Coding 769 bp A constitutive Anderson promoter assembled with the dTomato reporter gene. Laccalicious
BBa_K1688012 Coding 2002 bp The NahR construct assembled with the dTomato reporter gene. Laccalicious
BBa_K1688013 Coding 9487 bp The naphthalene pathway with the BBa_J23110 promoter and the B0034 RBS Nah7
BBa_K1688014 Coding 9487 bp The naphthalene pathway with the BBa_J23101 promoter and the B0034 RBS Nah7
BBa_K1688017 Coding 9444 bp The naphthalene pathway, with the B0034 RBS and both PstI sites mutagenized Nah7
BBa_K1688015 Coding 9444 bp The naphthalene pathway, with the B0034 RBS. Nah7