Difference between revisions of "Team:Vanderbilt/Parts/Optimized RFPs"

 
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             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Part_Collection" class="btn btn-default">Part Collection</a>
 
             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Part_Collection" class="btn btn-default">Part Collection</a>
 
             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Optimized_RFPs" class="btn btn-default chosen">Optimized RFPs</a>
 
             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Optimized_RFPs" class="btn btn-default chosen">Optimized RFPs</a>
             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Visualizing_Evolution" class="btn btn-default">Visualizing Evolution</a>
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             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Stable_Circuits" class="btn btn-default">Stable Circuits</a>
 
             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Repair_Enzymes" class="btn btn-default">Repair Enzymes</a>
 
             <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Repair_Enzymes" class="btn btn-default">Repair Enzymes</a>
 
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<p> While testing our system for lowering mutation rates, we relied heavily on fluorescent reporter genes with their sequences altered according to our optimization algorithm. These parts were made resistant to a variety of mutagen types, and placed in expression cassettes for studying rates of deleterious mutations <i>in vivo</i>.  The part numbers and their corresponding genes are listed below: </p>
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<h2>Optimized RFPs</h2>
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<p> While testing our system for lowering mutation rates, we relied heavily on fluorescent reporter genes with their sequences altered according to our optimization algorithm. These parts were made resistant to a variety of mutagen types, and placed in expression cassettes for studying rates of deleterious mutations <i>in vivo</i>.  The part numbers and their corresponding genes are listed below: </p><br>
 
   <p>K1673010 Partially UV-Resistant RFP
 
   <p>K1673010 Partially UV-Resistant RFP
 
   <p>K1673011 Constitutively Expressed Partially UV-Resistant RFP
 
   <p>K1673011 Constitutively Expressed Partially UV-Resistant RFP
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    <h3><font color="#7e1d2e">Team</font></h3>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Team/About"><font color="#9e515e">About</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Team/Members"><font color="#9e515e">Members</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Team/Attributes"><font color="#9e515e">Attributes</font></a>
 
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    <a href="https://2015.igem.org/Team:Vanderbilt/Team/Sponsors"><font color="#9e515e">Sponsors</font></a>
 
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  <div class="col-lg-2" style="height:100%">
 
    <h3><font color="#7e1d2e">Project</font></h3>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Project/Background"><font color="#9e515e">Background</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Project/Sequence"><font color="#9e515e">Sequence</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Project/Circuit"><font color="#9e515e">Circuit</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Project/Organism"><font color="#9e515e">Organism</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Project/Nanopore"><font color="#9e515e">Nanopore</font></a>
 
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    <a href="https://2015.igem.org/Team:Vanderbilt/Project/Achievements"><font color="#9e515e">Achievements</font></a>
 
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  <div class="col-lg-2" style="height:100%">
 
    <h3><font color="#7e1d2e">Parts</font></h3>
 
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Part_Collection"><font color="#9e515e">Part Collection</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Optimized_RFPs"><font color="#9e515e">Optimized RFPs</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Visualizing_Evolution"><font color="#9e515e">Visualizing Evolution</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Parts/Repair Enzymes"><font color="#9e515e">Repair Enzymes</font></a>
 
    <br>
 
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  <div class="col-lg-2" style="height:100%">
 
    <h3><font color="#7e1d2e">Notebook</font></h3>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Notebook/May"><font color="#9e515e">May</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Notebook/June"><font color="#9e515e">June</font></a>
 
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    <a href="https://2015.igem.org/Team:Vanderbilt/Notebook/July"><font color="#9e515e">July</font></a>
 
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    <a href="https://2015.igem.org/Team:Vanderbilt/Notebook/August"><font color="#9e515e">August</font></a>
 
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    <a href="https://2015.igem.org/Team:Vanderbilt/Notebook/September"><font color="#9e515e">September</font></a>
 
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  <div class="col-lg-2" style="height:100%">
 
    <h3><font color="#7e1d2e">Practices</font></h3>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Practices/Safety"><font color="#9e515e">Safety</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Practices/Collaborations"><font color="#9e515e">Collaborations</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Practices/Real_World_Applications"><font color="#9e515e">Applications</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Practices/Interlab"><font color="#9e515e">Interlab</font></a>
 
    <br>
 
  </div>
 
  <div class="col-lg-2" style="height:100%">
 
    <h3><font color="#7e1d2e">Software</font></h3>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Software/Development"><font color="#9e515e">Development</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Software/User_Guide"><font color="#9e515e">User Guide</font></a>
 
    <br>
 
    <a href="https://2015.igem.org/Team:Vanderbilt/Software/Stats"><font color="#9e515e">Statistics</font></a>
 
    <br>
 
  </div>
 
 
</div>
 
</div>
 
</div>
 
</div>

Latest revision as of 05:38, 21 November 2015

Vanderbilt iGEM 2015

Optimized RFPs

While testing our system for lowering mutation rates, we relied heavily on fluorescent reporter genes with their sequences altered according to our optimization algorithm. These parts were made resistant to a variety of mutagen types, and placed in expression cassettes for studying rates of deleterious mutations in vivo. The part numbers and their corresponding genes are listed below:


K1673010 Partially UV-Resistant RFP

K1673011 Constitutively Expressed Partially UV-Resistant RFP

K1673101 UV-Resistant RFP

K1673102 UV Mutation Optimized RFP, Improved Expression

K1673103 UV Mutation Maximizied RFP

K1673104 Oxidation-Resistant RFP

K1673110 IPTG Promoter Standard RFP

K1673111 IPTG Promoter UV-Resistant RFP

K1673112 IPTG Promoter UV-Resistant RFP, Improved Expression

K1673113 IPTG Promoter UV Mutation Maximized RFP

K1673114 IPTG Promoter Oxidation-Resistant RFP

K1673120 T7 Promoter Standard RFP

K1673121 T7 Promoter UV-Resistant RFP

K1673124 T7 Promoter Oxidation-Resistant RFP