Difference between revisions of "Team:Vanderbilt/Team/Attributions"

 
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   <div class="col-md-10 col-md-offset-1">
 
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     <br>
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     <h2>Attributions</h2>
−
     <p>While Vanderbilt University's iGEM team is driven by its undergraduates, our work is indebted to the generosity of our mentors and gracious sponsors. Vanderbilt iGEM prides itself in being a team run by undergraduates, for undergraduates. All project design and data analysis, lab work and experimentation, fundraising and outreach, and all the other work done by the team was all preformed by undergraduate student volunteers. However outside companies, faculty and staff, institutions, and individuals all have made contributions that have been essential in our team's growth and success. We would like to take the time to specially thank each one of them in the space below. </p>
+
     <p>While Vanderbilt University's iGEM team is driven by its undergraduates, our work is indebted to the generosity of our mentors and gracious sponsors. Vanderbilt iGEM prides itself in being a team run by undergraduates, for undergraduates. All project design and data analysis, lab work and experimentation, fundraising and outreach, and all the other work done by the team was all preformed by undergraduate student volunteers. However outside companies, faculty and staff, institutions, and individuals all have made contributions that have been essential in our team's growth and success. We would like to take the time to specially thank each one of them in the space below.</p>
  
 
     <div class="row">
 
     <div class="row">
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         </p>
 
         </p>
 
         <p>
 
         <p>
−
         <strong>Dr. Chrissy Morasco</b> for assisting with the administrative responsibilities of the team and giving us opportunities to brainstorm ideas and collaborate with other students during our research.
+
         <strong>Dr. Chrissy Morasco</strong> for assisting with the administrative responsibilities of the team and giving us opportunities to brainstorm ideas and collaborate with other students during our research.
 
         </p>
 
         </p>
 
         <p>
 
         <p>
−
         <strong>Dr. Ian Macara</b> for providing both laboratory spaces that our lab used over the year, along with allowing us access to equipment
+
         <strong>Dr. Ian Macara</strong> for providing both laboratory spaces that our lab used over the year, along with allowing us access to equipment
 
         </p>
 
         </p>
 
         <p>
 
         <p>
−
         <strong>Dr. Ethan Lee</b> for hosting our research space next to his lab and providing equipment
+
         <strong>Dr. Ethan Lee</strong> for hosting our research space next to his lab and providing equipment
 
         </p>
 
         </p>
 
       </div>
 
       </div>
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         <h2> Support From Other Researchers </h2>
 
         <h2> Support From Other Researchers </h2>
 
         <p>
 
         <p>
−
         <strong>Sam Budoff </b> for teaching our lab how to use the Nanopore next-generation DNA sequencer and providing us with the equipment necessary to run samples on the Nanopore
+
         <strong>Sam Budoff </strong> for teaching our lab how to use the Nanopore next-generation DNA sequencer and providing us with the equipment necessary to run samples on the Nanopore
 
         </p>
 
         </p>
 
         <p>
 
         <p>
−
         <strong>Anthony Tharp</b> for giving our team access to the equipment core
+
         <strong>Anthony Tharp</strong> for giving our team access to the equipment core
 
         </p>
 
         </p>
 
         <p>
 
         <p>
−
         <strong>Macara Lab Members</b> for welcoming the team and sharing their equipment with us
+
         <strong>Macara Lab Members</strong> for welcoming the team and sharing their equipment with us
 
         </p>
 
         </p>
 
       </div>
 
       </div>
 
     </div>
 
     </div>
−
      <h2>Project Attributions</h2>
+
   
−
      <p>We are proud to be able to say that all of our lab work was conducted by undergraduate team members, and that virtually all of our ideas originated from students on our team. The specific contributions of each member is broken down below:</p>
+
    <h2>Project Attributions</h2>
−
      <div class="row">
+
    <p>We are proud to be able to say that all of our lab work was conducted by undergraduate team members, and that virtually all of our ideas originated from students on our team. The specific contributions of each member is broken down below:</p>
−
        <div class="col-md-4">
+
   
−
          <h3> Software and Modeling </h3>
+
    <p><i>AH= Anna Hwang, DM= Danny McClanahan, DS= Daniel Shaykevich, JS=Jarrod Shilts, KF= Kathy Friedman, O2= Ophir Ospovat, SL= Stephen Lee, SR= Sikandar Raza, WC= Will Cox</i></p>
−
          <p>Designing mutation hotspot minimization and compiling parameters- JS
+
   
−
          </p><p>Writing sequence-optimization software- JS
+
    <div class="row">
−
          </p><p>Writing the GUI for the bioinformatic software- DM
+
      <div class="col-md-6">
−
          </p><p>Optimizing and improving the efficiency of the software- DM
+
        <h4> Software and Modeling </h4>
−
          </p><p>Collecting data from the Registry of Parts and compiling statistics- DM
+
        <p>Designing mutation hotspot minimization and compiling parameters- JS
−
          </p><p>Designing mathematical modeling projects- WC, JS, O2
+
        </p><p>Writing sequence-optimization software- JS
−
          </p><p>Writing code for mathematical models- WC
+
        </p><p>Writing the GUI for the bioinformatic software- DM
−
          </p><p>Generating graphs for mathematical models- WC</p>
+
        </p><p>Optimizing and improving the efficiency of the software- DM
−
        </div>
+
        </p><p>Collecting data from the Registry of Parts and compiling statistics- DM
−
        <div class="col-md-4">
+
        </p><p>Designing mathematical modeling projects- WC, JS, O2
−
          <h4> Sequence Optimization Experiments </h4>
+
        </p><p>Writing code for mathematical models- WC
−
          <p> Designing DNA damage quantification assays- JS
+
        </p><p>Generating graphs for mathematical models- WC</p>
−
          </p><p> Cloning sequence-optimized RFP genes- JS, SR, O2
+
−
          </p><p> Running alkaline gel electrophoresis assays- JS, O2
+
−
          </p><p> Running oxidative damage supercoiling assays- JS, SR
+
−
          </p><p>Generating graphs and compiling statistics- JS </p>
+
−
          <h4> Circuit Optimization Experiments </h4>
+
−
        </div>
+
−
        <div class="col-md-4">
+
−
          <p> Designing parts for improving gene circuit stability- JS, O2
+
−
          </p><p> Writing software for minimizing sequence homology- JS
+
−
          </p><p>  Cloning circuit part genes- JS, SR, SL, O2, DS
+
−
          </p><p> Designing yeast homologous recombination experiment- KF, JS, O2, SL
+
−
          </p><p> Cloning yeast homologous recombination genes- SL, JS
+
−
          </p><p> Assembling vectors for VERT system -JS </p>
+
−
        </div>
+
 
       </div>
 
       </div>
−
       <div class="row">
+
       <div class="col-md-6">
−
        <div class="col-md-4">
+
        <h4> Sequence Optimization Experiments </h4>
−
          <h4> Organism Optimization Experiments </h4>
+
        <p> Designing DNA damage quantification assays- JS
−
          <p> Designing cell culture assays- JS, O2
+
        </p><p> Cloning sequence-optimized RFP genes- JS, SR, O2
−
          </p><p> Measuring experimental cell cultures- JS, SL
+
         </p><p> Running alkaline gel electrophoresis assays- JS, O2
−
          </p><p>  Designing "Incorruptable cell" - JS
+
        </p><p> Running oxidative damage supercoiling assays- JS, SR
−
          </p><p> Cloning exogenous repair endonucleases- JS, SR, O2, SL, DS</p>
+
         </p><p>Generating graphs and compiling statistics- JS </p>
−
         </div>
+
       </div></div>
−
        <div class="col-md-4">
+
−
          <h4> Other Experiments </h4>
+
−
          <p> Nanopore experiments - SL, JS
+
−
          </p><p> Interlab study- JS
+
−
          </p><p> UGA Collaboration - JS
+
−
          </p><p> Preparing Competent Cells - JS, O2, DS, SL
+
−
          </p><p> Preparing plates, autoclaving, and other lab tasks - JS, SL, DS, O2, SR
+
−
         </div>
+
−
        <div class="col-md-4">
+
−
          <h4> Policy and Practices </h4>
+
−
          <p> Bioethics outreach- JS, SL, O2
+
−
          </p><p> Industry outreach- O2
+
−
          </p><p> High-school outreach- O2, SL
+
−
          </p><p> Undergraduate synthetic biology course- JS,O2
+
−
          </p><p> Mutation survey and statistics- JS</p>
+
−
        </div>
+
−
       </div>    
+
−
    </div>
+
 
     <div class="row">
 
     <div class="row">
−
       <div class="col-md-4 col-offset-2">
+
       <div class="col-md-6">
 +
        <h4> Circuit Optimization Experiments </h4>
 +
        <p> Designing parts for improving gene circuit stability- JS, O2
 +
        </p><p> Writing software for minimizing sequence homology- JS
 +
        </p><p>  Cloning circuit part genes- JS, SR, SL, O2, DS
 +
        </p><p> Designing yeast homologous recombination experiment- KF, JS, O2, SL
 +
        </p><p> Cloning yeast homologous recombination genes- SL, JS
 +
        </p><p> Assembling vectors for VERT system -JS </p>
 +
      </div>
 +
      <div class="col-md-6">
 +
        <h4> Organism Optimization Experiments </h4>
 +
        <p> Designing cell culture assays- JS, O2
 +
        </p><p> Measuring experimental cell cultures- JS, SL
 +
        </p><p>  Designing "Incorruptable cell" - JS
 +
        </p><p> Cloning exogenous repair endonucleases- JS, SR, O2, SL, DS</p>
 +
      </div></div>
 +
    <div class="row">
 +
      <div class="col-md-6">
 +
        <h4> Other Experiments </h4>
 +
        <p> Nanopore experiments - SL, JS
 +
        </p><p> Interlab study- JS
 +
        </p><p> UGA Collaboration - JS
 +
        </p><p> Preparing Competent Cells - JS, O2, DS, SL
 +
        </p><p> Preparing plates, autoclaving, and other lab tasks - JS, SL, DS, O2, SR
 +
      </div>
 +
      <div class="col-md-6">
 +
        <h4> Policy and Practices </h4>
 +
        <p> Bioethics outreach- JS, SL, O2
 +
        </p><p> Industry outreach- O2
 +
        </p><p> High-school outreach- O2, SL
 +
        </p><p> Undergraduate synthetic biology course- JS,O2
 +
        </p><p> Mutation survey and statistics- JS</p>
 +
      </div>
 +
</div>
 +
    <div class="row">
 +
      <div class="col-md-6 col">
 
         <h4> Project Wiki </h4>
 
         <h4> Project Wiki </h4>
 
         <p> Designing wiki layout- O2, AH, JS, SL
 
         <p> Designing wiki layout- O2, AH, JS, SL
Line 125: Line 128:
 
         </p><p> Writing "Software" section-DM
 
         </p><p> Writing "Software" section-DM
 
         </p><p> Writing "Modeling" section-WC
 
         </p><p> Writing "Modeling" section-WC
−
         </p><p> General wiki editing- AH, JS, SR, SL, DM, DS, WC
+
         </p><p> General wiki editing- AH, JS, SR, SL, DM, DS, WC</p>
 
       </div>
 
       </div>
−
       <div class="col-md-4">
+
       <div class="col-md-6">
 
         <h4> Other Tasks </h4>
 
         <h4> Other Tasks </h4>
 
         <p> Fundraising- O2, SL, JS, SR
 
         <p> Fundraising- O2, SL, JS, SR
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         </p><p> Making project presentation-JS, O2, SL, SR, DM, WC, DS</p>
 
         </p><p> Making project presentation-JS, O2, SL, SR, DM, WC, DS</p>
 
       </div>
 
       </div>
−
    </div>
+
</div>
−
  </div>
+
    </div>
−
    <br><br>
+
−
    <p>AH= Anna Hwang, DM= Danny McClanahan, JS=Jarrod Shilts, KF= Kathy Friedman, O2= Ophir Ospovat, SL= Stephen Lee, SR= Sikandar Raza, WC= Will Cox</p>
+
 
   </div>
 
   </div>
 
</div>
 
</div>

Latest revision as of 06:00, 21 November 2015

Vanderbilt iGEM 2015

Attributions

While Vanderbilt University's iGEM team is driven by its undergraduates, our work is indebted to the generosity of our mentors and gracious sponsors. Vanderbilt iGEM prides itself in being a team run by undergraduates, for undergraduates. All project design and data analysis, lab work and experimentation, fundraising and outreach, and all the other work done by the team was all preformed by undergraduate student volunteers. However outside companies, faculty and staff, institutions, and individuals all have made contributions that have been essential in our team's growth and success. We would like to take the time to specially thank each one of them in the space below.

Faculty Support

Dr. Kathy Friedman for serving as our team's primary faculty adviser, and always being available to discuss project ideas and to help troubleshoot our protocols.

Dr. Chrissy Morasco for assisting with the administrative responsibilities of the team and giving us opportunities to brainstorm ideas and collaborate with other students during our research.

Dr. Ian Macara for providing both laboratory spaces that our lab used over the year, along with allowing us access to equipment

Dr. Ethan Lee for hosting our research space next to his lab and providing equipment

Support From Other Researchers

Sam Budoff for teaching our lab how to use the Nanopore next-generation DNA sequencer and providing us with the equipment necessary to run samples on the Nanopore

Anthony Tharp for giving our team access to the equipment core

Macara Lab Members for welcoming the team and sharing their equipment with us

Project Attributions

We are proud to be able to say that all of our lab work was conducted by undergraduate team members, and that virtually all of our ideas originated from students on our team. The specific contributions of each member is broken down below:

AH= Anna Hwang, DM= Danny McClanahan, DS= Daniel Shaykevich, JS=Jarrod Shilts, KF= Kathy Friedman, O2= Ophir Ospovat, SL= Stephen Lee, SR= Sikandar Raza, WC= Will Cox

Software and Modeling

Designing mutation hotspot minimization and compiling parameters- JS

Writing sequence-optimization software- JS

Writing the GUI for the bioinformatic software- DM

Optimizing and improving the efficiency of the software- DM

Collecting data from the Registry of Parts and compiling statistics- DM

Designing mathematical modeling projects- WC, JS, O2

Writing code for mathematical models- WC

Generating graphs for mathematical models- WC

Sequence Optimization Experiments

Designing DNA damage quantification assays- JS

Cloning sequence-optimized RFP genes- JS, SR, O2

Running alkaline gel electrophoresis assays- JS, O2

Running oxidative damage supercoiling assays- JS, SR

Generating graphs and compiling statistics- JS

Circuit Optimization Experiments

Designing parts for improving gene circuit stability- JS, O2

Writing software for minimizing sequence homology- JS

Cloning circuit part genes- JS, SR, SL, O2, DS

Designing yeast homologous recombination experiment- KF, JS, O2, SL

Cloning yeast homologous recombination genes- SL, JS

Assembling vectors for VERT system -JS

Organism Optimization Experiments

Designing cell culture assays- JS, O2

Measuring experimental cell cultures- JS, SL

Designing "Incorruptable cell" - JS

Cloning exogenous repair endonucleases- JS, SR, O2, SL, DS

Other Experiments

Nanopore experiments - SL, JS

Interlab study- JS

UGA Collaboration - JS

Preparing Competent Cells - JS, O2, DS, SL

Preparing plates, autoclaving, and other lab tasks - JS, SL, DS, O2, SR

Policy and Practices

Bioethics outreach- JS, SL, O2

Industry outreach- O2

High-school outreach- O2, SL

Undergraduate synthetic biology course- JS,O2

Mutation survey and statistics- JS

Project Wiki

Designing wiki layout- O2, AH, JS, SL

Drawing wiki layout and logos - AH

Formatting wiki pages - AH

Writing "Team" section- JS, O2, SL

Writing "Project" sections-JS, O2, SL

Writing "Practices" section-JS

Writing "Software" section-DM

Writing "Modeling" section-WC

General wiki editing- AH, JS, SR, SL, DM, DS, WC

Other Tasks

Fundraising- O2, SL, JS, SR

Making project poster-JS

Making project presentation-JS, O2, SL, SR, DM, WC, DS


Team

About
Members
Attributes
Sponsors

Project

Background
Sequence
Circuit
Organism
Nanopore
Achievements

Parts

Part Collection
Optimized RFPs
Visualizing Evolution
Repair Enzymes

Notebook

May
June
July
August
September

Practices

Safety
Collaborations
Applications
Interlab

Software

Development
User Guide
Statistics

Modeling

Sequences
Circuits
Populations