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| <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/Description">Overview</a></li> | | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/Description">Overview</a></li> |
| <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectBP">Benzo[A]Pyrene</a></li> | | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectBP">Benzo[A]Pyrene</a></li> |
− | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectcopper">Copper</a></li>
| |
| <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectcadmium">Cadmium</a></li> | | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectcadmium">Cadmium</a></li> |
− | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectmercury">Mercury</a></li>
| |
| <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectlead">Lead</a></li> | | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectlead">Lead</a></li> |
| <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectafla">Aflatoxin</a></li> | | <li class="list-item"><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectafla">Aflatoxin</a></li> |
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| <p class="article-p">We mainly divide the whole experiment into 2 major parts.</p> | | <p class="article-p">We mainly divide the whole experiment into 2 major parts.</p> |
| <div class="article-img"><img src="https://static.igem.org/mediawiki/2015/5/5c/2015hsnu-Lead_1.png"></div> | | <div class="article-img"><img src="https://static.igem.org/mediawiki/2015/5/5c/2015hsnu-Lead_1.png"></div> |
− | <p class="article-p">The former fragment can consistently produce PbRr.[4]</p>
| + | <p class="article-p">▲Fig1-1:Circuit design of detecting Lead ion.</p> |
− | <div class="article-img"><img src="https://static.igem.org/mediawiki/2015/6/69/2015hsnu-Lead_2.png"></div>
| + | <p class="article-p">The former fragment can consistently produce PbRr.[4]</p> |
− | <p class="article-p">If the oil contains lead ions, they can integrate with proteins PbRr to further activate proteins.</p> | + | <div class="article-img"><img src="https://static.igem.org/mediawiki/2015/6/69/2015hsnu-Lead_2.png"></div> |
− | <div class="article-img"><img src="https://static.igem.org/mediawiki/2015/8/8b/2015hsnu-Lead_3.png"></div>
| + | <p class="article-p">▲Fig1-2:Circuit design of detecting Lead ion.</p> |
− | <p class="article-p">As for the later fragment, the lead promoter can be controlled by activated protein PbRr to further trigger the GFP.</p>
| + | <p class="article-p">If the oil contains lead ions, they can integrate with proteins PbRr to further activate proteins.</p> |
| + | <div class="article-img"><img src="https://static.igem.org/mediawiki/2015/8/8b/2015hsnu-Lead_3.png"></div> |
| + | <p class="article-p">▲Fig1-3:Circuit design of detecting Lead ion.</p> |
| + | <p class="article-p">As for the later fragment, the lead promoter can be controlled by activated protein PbRr to further trigger the GFP.</p> |
| </article> | | </article> |
| <article class="article"> | | <article class="article"> |
| <h3 class="article-title">Result</h3> | | <h3 class="article-title">Result</h3> |
− | <ol class="article-ol"> | + | <ul class="article-ul"> |
| <li> | | <li> |
| <span>Whether lead can enter e.coli or not</span> | | <span>Whether lead can enter e.coli or not</span> |
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| <li><span>Method</span> | | <li><span>Method</span> |
| <h4 class="article-h4">Detection of the amount of toxins in the e.coli.</h4> | | <h4 class="article-h4">Detection of the amount of toxins in the e.coli.</h4> |
− | <ol class="article-ol"> | + | <ol class="article-ol" type="I"> |
| <li>Add 100μl of DH5α and 900μl of LB broth into the tube and incubate for 1hr.</li> | | <li>Add 100μl of DH5α and 900μl of LB broth into the tube and incubate for 1hr.</li> |
| <li>Centrifuge at 4000rpm for 3min and clicard 800μl of the supernatant</li> | | <li>Centrifuge at 4000rpm for 3min and clicard 800μl of the supernatant</li> |
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| </ol> | | </ol> |
| <h4 class="article-h4">Next day</h4> | | <h4 class="article-h4">Next day</h4> |
− | <ol class="article-ol"> | + | <ol class="article-ol" type="I"> |
| <li> | | <li> |
| <p class="article-p">Prepare 16 microcentrifuge tubes.(5 kinds of concentration *3 timings+control)</p> | | <p class="article-p">Prepare 16 microcentrifuge tubes.(5 kinds of concentration *3 timings+control)</p> |
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| </li> | | </li> |
| <li> | | <li> |
− | <ol class="article-ol"> | + | <ol class="article-ol" type="i"> |
| <li>Add 0.5cc of ddH<sub>2</sub>O and mix with the bacterias</li> | | <li>Add 0.5cc of ddH<sub>2</sub>O and mix with the bacterias</li> |
| <li>Centrifuge at 13000rpm for 30 sec</li> | | <li>Centrifuge at 13000rpm for 30 sec</li> |
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| <li> | | <li> |
| <p class="article-p">Kill the bacteria:</p> | | <p class="article-p">Kill the bacteria:</p> |
− | <ol class="article-ol"> | + | <ol class="article-ol" type="i"> |
| <li>Put all the tubes in the Liquid nitrogen</li> | | <li>Put all the tubes in the Liquid nitrogen</li> |
| <li>When they freeze,heat them at 100℃</li> | | <li>When they freeze,heat them at 100℃</li> |
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| | | |
| </li> | | </li> |
− | <li><span>Result</span> | + | <li><span>Result</span></li> |
| | | |
| <div class="section-note"> | | <div class="section-note"> |
| <p class="note-caption">We put all the result into fluorescent reader.</p> | | <p class="note-caption">We put all the result into fluorescent reader.</p> |
− | <p class="note-caption">By using gold nanoparticles(AU-NPs), we measured the lead absorption of e.coli. The higher absorption it shows, the less lead enters e.coli.</p> | + | <p class="note-caption">By using gold nanoparticles(AU-NPs), we measured the lead absorption of e.coli. The higher fluorescence intensity it shows, the less lead enters e.coli.</p> |
− | <img src="https://static.igem.org/mediawiki/2015/3/3b/HSNU-TAIPEI-LEAD-RESULT-1.jpg">
| + | <img src="https://static.igem.org/mediawiki/2015/5/59/HSNU-TAIPEI-LEAD-result1.jpg"> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the longer e.coli put in 1 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p>
| + | <p class="article-p">▲Fig.2:The Pb absorption of E.coli in 1 ppm Pb<sup>2+</sup> in different timings.</p> |
− | <img src="https://static.igem.org/mediawiki/2015/3/39/HSNU-TAIPEI-LEAD-RESULT-2.jpg">
| + | <p class="note-caption">With this figure, we can know that the longer e.coli put in 1 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the longer e.coli put in 0.1 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p>
| + | <img src="https://static.igem.org/mediawiki/2015/4/4a/HSNU-TAIPEI-LEAD-result2.jpg"> |
− | <img src="https://static.igem.org/mediawiki/2015/1/15/HSNU-TAIPEI-LEAD-RESULT-3.jpg">
| + | <p class="article-p">▲Fig.3:The Pb absorption of E.coli in 0.1 ppm Pb<sup>2+</sup> in different timings.</p> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the longer e.coli put in 0.01 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p> | + | <p class="note-caption">With this figure, we can know that the longer e.coli put in 0.1 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p> |
− | <img src="https://static.igem.org/mediawiki/2015/f/f4/HSNU-TAIPEI-LEAD-RESULT-4.jpg">
| + | <img src="https://static.igem.org/mediawiki/2015/4/40/HSNU-TAIPEI-LEAD-result3.jpg"> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the longer e.coli put in 0.001 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p>
| + | <p class="article-p">▲Fig.4: The Pb absorption of E.coli in 0.01 ppm Pb<sup>2+</sup> in different timings.</p> |
− | <img src="https://static.igem.org/mediawiki/2015/1/1d/HSNU-TAIPEI-LEAD-RESULT-5.jpg"> | + | <p class="note-caption">With this figure, we can know that the longer e.coli put in 0.01 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the longer e.coli put in 0.0001 ppm Pb<sup>2+</sup> , the more lead entered the e.coli</p>
| + | <img src="https://static.igem.org/mediawiki/2015/f/f2/HSNU-TAIPEI-LEAD-result4.jpg"> |
− | <img src="https://static.igem.org/mediawiki/2015/d/d1/HSNU-TAIPEI-LEAD-RESULT-6.jpg"> | + | <p class="article-p">▲Fig.5: The Pb absorption of E.coli in 0.001 ppm Pb<sup>2+</sup> in different timings.</p> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the higher Pb<sup>2+</sup> concentration in 0.5 hr, the more lead entered the e.coli.</p>
| + | <p class="note-caption">With this figure, we can know that the longer e.coli put in 0.001 ppm Pb<sup>2+</sup> , the more lead entered the e.coli.</p> |
− | <img src="https://static.igem.org/mediawiki/2015/4/43/HSNU-TAIPEI-LEAD-RESULT-7.jpg"> | + | <img src="https://static.igem.org/mediawiki/2015/f/fc/HSNU-TAIPEI-LEAD-result5.jpg"> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the higher Pb<sup>2+</sup> concentration in 1 hr, the more lead entered the e.coli.</p>
| + | <p class="article-p">▲Fig:6: The Pb absorption of E.coli in 0.0001 ppm Pb<sup>2+</sup> in different timings.</p> |
− | <img src="https://static.igem.org/mediawiki/2015/e/e3/HSNU-TAIPEI-LEAD-RESULT-8.jpg"> | + | <p class="note-caption">With this figure, we can know that the longer e.coli put in 0.0001 ppm Pb<sup>2+</sup> , the more lead entered the e.coli</p> |
− | <p class="note-caption"><strong>↑</strong>With this figure, we can know that the higher Pb<sup>2+</sup> concentration in 1.5 hr, the more lead entered the e.coli.</p>
| + | <img src="https://static.igem.org/mediawiki/2015/0/0c/HSNU-TAIPEI-LEAD-result6.jpg"> |
| + | <p class="article-p">▲Fig.7: The Pb absorption of E.coli in 0.5hr in different Pb<sup>2+</sup> concentration.</p> |
| + | <p class="note-caption">With this figure, we can know that the higher Pb<sup>2+</sup> concentration in 0.5 hr, the more lead entered the e.coli.</p> |
| + | <img src="https://static.igem.org/mediawiki/2015/d/de/HSNU-TAIPEI-LEAD-result7.jpg"> |
| + | <p class="article-p">▲Fig.8: The Pb absorption of E.coli in 1hr in different Pb<sup>2+</sup> concentration.</p> |
| + | <p class="note-caption">With this figure, we can know that the higher Pb<sup>2+</sup> concentration in 1 hr, the more lead entered the e.coli.</p> |
| + | <img src="https://static.igem.org/mediawiki/2015/2/2e/HSNU-TAIPEI-LEAD-result8.jpg"> |
| + | <p class="article-p">▲Fig.9: The Pb absorption of E.coli in 1.5hr in different Pb<sup>2</sup> concentration.</p> |
| + | <p class="note-caption">With this figure, we can know that the higher Pb<sup>2+</sup> concentration in 1.5 hr, the more lead entered the e.coli.</p> |
| + | <img src="https://static.igem.org/mediawiki/2015/c/c6/HSNU-TAIPEI-LEAD-result-9.jpg" width="60%"> |
| + | <p class="article-p">▲Fig.10: Checking-measuring curve of Pb.</p> |
| + | <p class="note-caption">With this figure,we can know Pb concentration is in the solution.</p> |
| </div> | | </div> |
| </li> | | </li> |
− | <li><span>Discussion</span></li>
| |
| </ol> | | </ol> |
| </li> | | </li> |
− | <li>
| |
− | <span>Whether e.coli is alive in the poisons, condition or not</span>
| |
− | <ol class="article-ol" type="A">
| |
− | <li><span>Method</span>
| |
− | <div class="section note">
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− | <h2 class="note-title">DH5α-Pretest</h2>
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− | <div class="note-content">
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− | <h3 class="note-subtitle">Procedure</h3>
| |
− | <p class="note-caption">Because we must test E.coli’s Survival in the environment there is Lead by counting the colonies,First we test how much concentration is the best.</p>
| |
− | <ol class="note-ordered-list">
| |
− | <li>
| |
− | <p class="note-caption">culture</p>
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− | <p class="note-caption">STEP1:take 1μL DH5α to spread the plate(no Antibiotic)</p>
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− | <p class="note-caption">STEP2:put in 37 degree Celsius 12~16hr</p>
| |
− | </li>
| |
− | <li>
| |
− | <p class="note-caption">liquid culture</p>
| |
− | </li>
| |
− | <li>
| |
− | <p class="note-caption">(8/19)</p>
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− | <p class="note-caption">STEP1:put 80μL into 2ml LB broth </p>
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− | <p class="note-caption">STEP2:recovering</p>
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− | <p class="note-caption">STEP3: After 2hr,dilute it to 10<sup>-4</sup>,10<sup>-5</sup>,10<sup>-6</sup>,10<sup>-7</sup>,and then go to spread the plate (no Antibiotic)</p>
| |
− | <p class="note-caption">STEP4: After 4hr dilute it to 10<sup>-4</sup>, 10<sup>-5</sup> ,10<sup>-6</sup> ,10<sup>-7</sup> ,and then go to spread the plate (no Antibiotic), 6hr and 8hr Similarly</p>
| |
− | <p class="note-caption">STEP5:Take 200μL out from the tube and spread the plate(AMP+)</p>
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− | <p class="note-caption">STEP6: put in 37 degree Celsius 12~16hr</p>
| |
− | </li>
| |
− | </ol>
| |
| | | |
− | </div>
| + | <ul> |
− | </div>
| + | |
− | | + | |
− | <div class="section note">
| + | |
− | <h2 class="note-title">Survival</h2>
| + | |
− | <div class="note-content">
| + | |
− | <h3 class="note-subtitle">Procedure</h3>
| + | |
− | <p class="note-caption">First we culture DH5α with LB only plate for 15hr. Then,pick one colony in the LB broth,and liquid culture for 15hr.</p>
| + | |
− | <p class="note-caption">We divided two categories A and B.</p>
| + | |
− | <h3 class="note-subtitle">A:</h3>
| + | |
− | <p class="note-caption">Take 80μL into 2ml LB broth × 6 tubes and then culture 1 hr.</p>
| + | |
− | <p class="note-caption">After 1hr,add 20μL Lead into three tubes(conc. Is 2000ppb(A thousand times the standard value))</p>
| + | |
− | <p class="note-caption">And add 20μL DMSO into the other tubes.Then,culture for 3hr.</p>
| + | |
− | <p class="note-caption">After 3hr,dilute the broth to 10<sup>-6</sup></p>
| + | |
− | <p class="note-caption">And take 200μL to spread the plate.</p>
| + | |
− | <h3 class="note-subtitle">B:</h3>
| + | |
− | <p class="note-caption">Take 80μL into 2ml LB broth in a tube And then culture 1 hr.</p>
| + | |
− | <p class="note-caption">After 1hr, put them into 6 tubes equally.</p>
| + | |
− | <p class="note-caption">Dilute the broth to 5×10<sup>-4</sup></p>
| + | |
− | <p class="note-caption">Add 0.4μL Lead(2×10<sup>-4</sup>) in three tubes.</p>
| + | |
− | <p class="note-caption">Add 0.4μL DMSO in the other three tubes.</p>
| + | |
− | <p class="note-caption">Go to 37 degree Celsius shaking for 10min.</p>
| + | |
− | <p class="note-caption">Take 200μL to spread the plate.</p>
| + | |
− | <img src="https://static.igem.org/mediawiki/2015/e/ee/HSNU-TAIPEI-BZP-904-1.jpg" width="50%">
| + | |
− | | + | |
− | </div>
| + | |
− | </div>
| + | |
− | </li>
| + | |
− | <li><span>Results</span></li>
| + | |
− | <li><span>Discussion</span></li>
| + | |
− | </ol>
| + | |
− | </li>
| + | |
− | <li>
| + | |
− | <span>The relation between the concentration of lead and illumination of RFP</span>
| + | |
− | <ol class="article-ol" type="A">
| + | |
− | <li><span>Method</span></li>
| + | |
− | <li><span>Results</span></li>
| + | |
− | <li><span>Discussion</span></li>
| + | |
− | </ol>
| + | |
− | </li>
| + | |
− | <ol> | + | |
| </article> | | </article> |
| <article class="article"> | | <article class="article"> |
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| <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectafla">Aflatoxin</a></li> | | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectafla">Aflatoxin</a></li> |
| </ul> | | </ul> |
| + | </div> |
| + | <div class="side-nav"> |
| + | <h4>Project</h4> |
| + | <ul> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/Description">Overview</a></li> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectBP">Benzo[A]Pyrene</a></li> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectcopper">Copper</a></li> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectcadmium">Cadmium</a></li> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectmercury">Mercury</a></li> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectlead">Lead</a></li> |
| + | <li><a href="https://2015.igem.org/Team:HSNU-TAIPEI/projectafla">Aflatoxin</a></li> |
| + | </ul> |
| + | </div> |
| | | |
| </div> | | </div> |
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| <footer> | | <footer> |
| <div class="footer-cell"> | | <div class="footer-cell"> |
| + | <div class="six-img"> |
| + | <img src="https://static.igem.org/mediawiki/2015/f/f8/HSNU-TAIPEI_cooperation_1.gif"> |
| + | <img src="https://static.igem.org/mediawiki/2015/3/37/HSNU-TAIPEI_cooperation_2.png"> |
| + | <img src="https://static.igem.org/mediawiki/2015/0/02/HSNU-TAIPEI_cooperation_3.png"> |
| + | <img src="https://static.igem.org/mediawiki/2015/9/92/HSNU-TAIPEI_cooperation_4.png"> |
| + | <img src="https://static.igem.org/mediawiki/2015/e/e8/HSNU-TAIPEI_cooperation_5.png"> |
| + | <img src="https://static.igem.org/mediawiki/2015/6/60/HSNU-TAIPEI_cooperation_6.png"> |
| + | <img src="https://static.igem.org/mediawiki/2015/9/9a/HSNU-TAIPEI_attributions_1.gif"> |
| + | </div> |
| <p><a href="http://www.hs.ntnu.edu.tw">HSNU | Taipei</a></p> | | <p><a href="http://www.hs.ntnu.edu.tw">HSNU | Taipei</a></p> |
| </div> | | </div> |