Difference between revisions of "Team:Concordia/Description"

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<h2> Project Description </h2>
 
<h2> Project Description </h2>
  
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<p>Tell us about your project, describe what moves you and why this is something important for your team.</p>
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<h3>Project: Lactococcus scaffold</h3>
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<h5>What should this page contain?</h5>
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<p>This year, our goal is to genetically engineer a strain of the species Lactococcus lactis to express an extracellular platform, which can bind to and anchor a very wide variety of enzymes. By introducing optimized genes from the bacterial species Clostridium thermocellum, we will be able to create a novel tool with seemingly endless possibilities.</p>
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<ul>
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<li> A clear and concise description of your project.</li>
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<li>A detailed explanation of why your team chose to work on this particular project.</li>
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<li>References and sources to document your research.</li>
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<li>Use illustrations and other visual resources to explain your project.</li>
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<p> By using the protein products of these optimized genes, we will be able to create an organized array of customizable enzymes that will bind to the cells' outer membrane.</p>
  
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<h3>Cohesins and Dockerins</h3>
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<h4>Advice on writing your Project Description</h4>
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<p>The main gene products of interest in this work are known as Cohesins and Dockerins.</p>  
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We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be consist, accurate and unambiguous in your achievements.  
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</p>
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<p>The Cohesins are structural proteins that form part of the outlay of the scaffold. These elements act as anchors for other proteins and are highly specific, which makes them reliable for the purpose of ordered display of proteins.</p>  
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Judges like to read your wiki and know exactly what you have achieved. This is how you should think about these sections; from the point of view of the judge evaluating you at the end of the year.
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</p>
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<p>The Dockerins are also proteins and are usually fused with some other enzyme. These elements act as adaptors for the enzyme they are attached to, and allow them to anchor themselves onto the Cohesin elements of the scaffold.</p>
  
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<p>There are different types of Cohesins, with their respective complementary Dockerins, which make the scaffold a very powerful tool in the biotechnology landscape.</p>
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<h4>References</h4>
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<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you though about your project and what works inspired you.</p>
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<h3>Implications</h3>
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<h4>Inspiration</h4>
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<p>See how other teams have described and presented their projects: </p>
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<li><a href="https://2014.igem.org/Team:Imperial/Project"> Imperial</a></li>
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<li>
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<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> UC Davis</a></li>
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<h4>Increased efficiency</h4>
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<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">SYSU Software</a></li>
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<p>For many metabolic processes happening in the cell, the enzymatic substrate must be imported into the cytoplasm for processing. This usually requires energy from the cell, which diminishes the efficiency of the process. In the same way, if the metabolic product of such a reaction would be of interest, the organism would require a way to excrete it, which is, again, energetically consuming. With an external scaffold holding these enzymes in place, the import of substrate and export of product would be bypassed, and therefore the efficiency of a certain enzymatic process could be increased or facilitated.</p>
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</li>
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<li>
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<h4>Ordered multi-step processes</h4>
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<p>By ordering the correct pairs of cohesins with their respective dockerin-enzyme fusion products on the scaffold, it is possible to recreate or engineer diverse multi-step processes with high efficiency. Imitating the naturally occurring process of enzyme channeling, emulating multi-enzyme complexes and programming seemingly complex metabolic processes are only some of the many possible advantages of the scaffold.</p>
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</li>
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<li>
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<h4>Fusion of non-prokaryotic proteins to scaffold</h4>
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<p>Many proteins that have potential scientific or industrial interest are difficult or impossible to express in prokaryotic organisms in a useful manner. Eukaryotic enzyme-dockerin fusion products could be expressed in some other organisms, like yeast, and displayed extracellularly on the bacterial scaffold, giving a whole new toolkit to researchers and companies alike.</p>
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</li>
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<h3>Our proof of concept</h3>
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<p>To demonstrate the immediate practicality and usefulness of our project, we decided to tackle a health issue that affects an important number of people all over the world.</p>
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<p>Lactose intolerance is the inability to degrade the sugar lactose normally, due to an insufficient secretion of the enzyme responsible for this process, known as lactase. This inability to break down lactose often results in symptoms of the gastrointestinal tract, such as feeling of discomfort, stomach pain, bloating and diarrhoea, which prevents the people suffering from this condition to consume dairy in which this sugar is found abundantly.</p>
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<p>By introducing a combination of the scaffold-displaying strain of Lactococcus lactis, which is naturally found in dairy products such as yogurt and cheese, and a dockerin-lactase fusion product as a supplement for the gastrointestinal tract of patients suffering from this condition, significant and long-lasting relief could be offered along with the possibility of consuming dairy products regularly. This option is particularly attractive and represents a safe, reliable and longer-lasting alternative for the currently offered solutions for this problem.</p>
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</html>
 
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Revision as of 22:43, 15 July 2015

Project Description

Project: Lactococcus scaffold

This year, our goal is to genetically engineer a strain of the species Lactococcus lactis to express an extracellular platform, which can bind to and anchor a very wide variety of enzymes. By introducing optimized genes from the bacterial species Clostridium thermocellum, we will be able to create a novel tool with seemingly endless possibilities.

By using the protein products of these optimized genes, we will be able to create an organized array of customizable enzymes that will bind to the cells' outer membrane.

Cohesins and Dockerins

The main gene products of interest in this work are known as Cohesins and Dockerins.

The Cohesins are structural proteins that form part of the outlay of the scaffold. These elements act as anchors for other proteins and are highly specific, which makes them reliable for the purpose of ordered display of proteins.

The Dockerins are also proteins and are usually fused with some other enzyme. These elements act as adaptors for the enzyme they are attached to, and allow them to anchor themselves onto the Cohesin elements of the scaffold.

There are different types of Cohesins, with their respective complementary Dockerins, which make the scaffold a very powerful tool in the biotechnology landscape.

Implications

  • Increased efficiency

    For many metabolic processes happening in the cell, the enzymatic substrate must be imported into the cytoplasm for processing. This usually requires energy from the cell, which diminishes the efficiency of the process. In the same way, if the metabolic product of such a reaction would be of interest, the organism would require a way to excrete it, which is, again, energetically consuming. With an external scaffold holding these enzymes in place, the import of substrate and export of product would be bypassed, and therefore the efficiency of a certain enzymatic process could be increased or facilitated.

  • Ordered multi-step processes

    By ordering the correct pairs of cohesins with their respective dockerin-enzyme fusion products on the scaffold, it is possible to recreate or engineer diverse multi-step processes with high efficiency. Imitating the naturally occurring process of enzyme channeling, emulating multi-enzyme complexes and programming seemingly complex metabolic processes are only some of the many possible advantages of the scaffold.

  • Fusion of non-prokaryotic proteins to scaffold

    Many proteins that have potential scientific or industrial interest are difficult or impossible to express in prokaryotic organisms in a useful manner. Eukaryotic enzyme-dockerin fusion products could be expressed in some other organisms, like yeast, and displayed extracellularly on the bacterial scaffold, giving a whole new toolkit to researchers and companies alike.

Our proof of concept

To demonstrate the immediate practicality and usefulness of our project, we decided to tackle a health issue that affects an important number of people all over the world.

Lactose intolerance is the inability to degrade the sugar lactose normally, due to an insufficient secretion of the enzyme responsible for this process, known as lactase. This inability to break down lactose often results in symptoms of the gastrointestinal tract, such as feeling of discomfort, stomach pain, bloating and diarrhoea, which prevents the people suffering from this condition to consume dairy in which this sugar is found abundantly.

By introducing a combination of the scaffold-displaying strain of Lactococcus lactis, which is naturally found in dairy products such as yogurt and cheese, and a dockerin-lactase fusion product as a supplement for the gastrointestinal tract of patients suffering from this condition, significant and long-lasting relief could be offered along with the possibility of consuming dairy products regularly. This option is particularly attractive and represents a safe, reliable and longer-lasting alternative for the currently offered solutions for this problem.