Difference between revisions of "Team:Toulouse/Description"

(Undo revision 272944 by Truan (talk))
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<div class="wrapper row0 bgded" style="background-image:url('  https://static.igem.org/mediawiki/2015/f/f5/TLSE_bg_1.png')">
 +
 
  
 +
 
 +
 
 +
  <div class="shout">
 +
   
 +
    <div class="shout-content clear">
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      <div class="maintitle">
 +
    <center> <h3>Project description</h3> </center>
 +
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 +
  <center><img src="https://static.igem.org/mediawiki/2015/7/70/TLSE_context_BG.png"></center>
 +
 
 +
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    <!-- ################################################################################################ -->
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 +
    <!-- ################################################################################################ -->
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  <div class="title">
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      <a href="#main1"><h3>Context</h3></a>
 +
    </div>
 +
<center> 
 +
    <div id="breadcrumb" class="clear" style="float: center;" >
 +
  <ul>
 +
        <li><a href="#domBee">- Domestic bees</a></li>
 +
        <li><a href="#CCD">- Collapse of bees</a></li>
 +
        <li><a href="#varroa"><i>- Varroa destructor</i></a></li>
 +
        <li><a href="#outB">- Outbreak of <i> Varroa destructor </i> </a></li>
 +
<li><a href="#fight">- Ways to fight <i>Varroa destructor</i></a></li>
 +
      </ul>
 +
    </div>
  
/* Shout - Call To Action
+
</center>
---------------------------------------------------------------------------------------------------------------*/
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<div class="title">
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+
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      <a href="#main2"><h3>Strategy</h3></a>
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    <div id="breadcrumb" class="clear" style="float: center;" >
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        <li><a href="#part1">- Introducing ApiColi</a></li>
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        <li><a href="#part2">- It’s a TrapiColi!</a></li>
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+
        <li><a href="#part3">- Apicoli circadian rhythm</a></li>
/* Page Header
+
      </ul>
--------------------------------------------------------------------------------------------------------------- */
+
    </div>
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</center>
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  <!--   ################################################################################################ -->
 +
 
  
 +
    <!-- FIRST PARAGRAPH -->
 +
 +
<center><div class="title" >  
 +
<h3>Context: Bees and pollination</h3>
 +
</div></center>
  
/* Latest
+
<div class="group center">
---------------------------------------------------------------------------------------------------------------*/
+
        <p align="justify" style="font-size:15px;">
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+
.latest *{margin:0; padding:0;}
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Bees excel in pollination and thus play an essential role in maintaining ecosystems by participating to the production of seeds.  
.latest ul, .latest ul li{border:solid; margin-bottom:15px;}
+
Bees harvest pollen and use proteins to feed their offspring. Moreover, by gathering pollen, they allow the reproduction of 84 % of the plants that grow in Europe. Bees are also responsible for the production of 35 % of edible fruits and vegetables.  
.latest ul{border:solid; border-width:1px 0;}
+
Among all bees, the domestic bee, <i>Apis mellifera</i>, which builds its swarm in hives provided
.latest ul li{display:block; float:left; width:20%; border-width:0 0 0 1px; box-sizing:border-box;}
+
by man, is directly responsible for the production of honey, wax and propolis.  
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</p>
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<br>
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  <img src="https://static.igem.org/mediawiki/2015/3/37/TLSE_context_fig1.png" />
 +
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 +
<div class="group center">
 +
<br>
 +
<p>Figure 1: Examples of products dependent on bee pollination</p>
 +
</div>
 +
 +
 +
<div class="group center"> <!-- FIRST PARAGRAPH -->
 +
        <p align="justify" style="font-size:15px;">
 +
According to the French INRA (National Institute of Agricultural Research),
 +
the bee extinction would represent an economical worldwide loss of 163 billion USD.  
 +
This huge number reflects the importance of the bees in the global ecosystem.
  
  
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+
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      </div>
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+
<div class="subtitle">  
 +
<h3>Domestic bees</h3>
 +
</div>
  
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      <div class="one_half first">
 +
  <p align="justify" style="font-size:15px;">
 +
  <br>
 +
    There are three types of bees
 +
living in a beehive: the worker
 +
bees, the queen bee and the male
 +
bees. In the colony, the work is
 +
divided in such a way that each
 +
caste is specialized in its activities.
 +
The worker bees are infertile female
 +
and represent the most numerous caste
 +
in the beehive. Their main activities are
 +
to clean the beehive cells, ventilate the
 +
beehive, cap the beehive cells containing
 +
the bee eggs, feed the larvae, gather pollen and defend the colony.
 +
<!-- ANCHOR CCD --> </p> <div id="CCD"><!-- ANCHOR CCD --></div>  <p align="justify" style="font-size:15px;">
 +
The queen bee ensures the renewal of
 +
the bee colony.  
 +
The male bees represent the infertilized eggs.
 +
Their main activity is the reproductive function with the queen bee outside of  the beehive.
 +
</p>
 +
 
 +
      </div>
  
.sidebar .sdb_holder{margin-bottom:50px;}
+
      <div class="one_half">
.sidebar .sdb_holder:last-child{margin-bottom:0;}
+
     
 +
<img src="https://static.igem.org/mediawiki/2015/2/28/TLSE_context_fig1bis.png">
 +
<p>The Queen, a Worker and a male (coming soon)
 +
</p>
 +
 +
          </div>
 +
  </div>
 +
 +
 +
  
  
/* Footer
 
---------------------------------------------------------------------------------------------------------------*/
 
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#footer .shout{margin:0 0 80px 0; padding:0;}
+
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 +
<div class="subtitle">
  
#footer .title{margin:0 0 30px 0; padding:0 0 8px 0; border-bottom:1px solid; font-size:16px; text-transform:uppercase;}
+
<h3>Collapse of Bees</h3>
 +
</div>
  
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 +
<div class="group center">
 +
      <div class="one_half first">
 +
<img src="https://static.igem.org/mediawiki/2015/1/14/TLSE_context_fig1bis2.png" style="width:60%;">  
 +
      </div>
  
 +
      <div class="one_half">
 +
<p align="justify" style="font-size:15px;">
 +
  <br>
 +
Over the last few decades, a decline in the honeybee population has been observed. In Europe 24%
 +
of the domestic bee species are threatened of extinction. The more indicators you consider, the
 +
more alarming the situation appears. Bee loss has a multifactorial origin. Among these factors,
 +
the <b>Colony Collapse Disorder</b> (CCD) is one of the most important. CCD corresponds to a massive loss
 +
of bee colonies. The causes of this syndrome are numerous: pesticides, viruses, parasites… among those,
 +
a mite wisely named <!-- ANCHOR varroa --> <i id="varroa">Varroa destructor</i> is one of the bees fiercest enemies.
 +
</p>
 +
          </div>
 +
  </div>
 +
<div class="subtitle">  
 +
<h3><i>Varroa destructor</i></h3>
 +
</div>
 +
  <div class="group center"> <!-- FIRST PARAGRAPH -->
 +
        <p align="justify" style="font-size:15px;">
 +
 +
<i>Varroa destructor</i> is an obligatory ectoparasite
 +
of bees. This means it is an external parasite
 +
and it cannot survive without its host, the bee.
 +
The varroa development cycle takes place in the
 +
beehive cells in parallel of the bee development
 +
cycle. The key individual of the varroa development
 +
cycle is the adult female commonly named “founder”.
 +
The founder reproduces exclusively in a brood cell
 +
that represents the beehive cell containing a bee
 +
larva. The founder reproduction occurs during the
 +
phoretic phase where the varroa is moved from one
 +
bee colony to the other by an adult bee.
  
/* Copyright
+
</p>
---------------------------------------------------------------------------------------------------------------*/
+
      </div>
#copyright{padding:30px 0;}
+
 
#copyright p{margin:0; padding:0;}
+
 
 +
 
 +
  <div class="group center">
 +
<br>
 +
  <img src="https://static.igem.org/mediawiki/2015/f/f2/TLSE_context_fig2.png" style="width:85%;height:55%;" />
 +
</div>
 +
<div class="group center">
 +
<br>
 +
<p><b>Figure 2: Synchronized life cycle of Honeybees and <i>Varroa destructor</i></b>. Phoretic phase is the phase were varroa is fixed on an adult bee. This phase is followed by the reproductive phase which takes place in bee broods. Phoretic phase then restarts when the imago (last embryonic stage of the bee) emerges from the brood.</p>
 +
</div>
 +
 
 +
<div class="group center"> <!-- FIRST PARAGRAPH -->
 +
        <p align="justify" style="font-size:15px;">
 +
 +
The bee infestation by varroa occurs between the egg laying of the queen bee in beehive cells and the encapsulation of the bee larva inside the beehive cell. After feeding off the larva the founder will start laying varroa eggs. The newborn varroas will develop themselves, go through different stages and will reproduce within the brood cell.
 +
When the mature bee finally emerges from the brood cell, female varroas will stick themselves to it therefore becoming “phoretic”.
 +
The <i>Varroa destructor</i> itself is of significant danger. However it is the association with the Deformed Wing Virus (DWV) that makes him one of the most virulent threats for honeybees. The study of the interplay between the mite and the DWV shows that an intense viral replication is triggered by the mite feeding off the bee, leading to a devastating viral outbreak.
  
 +
</p>
 +
      </div>
 +
 
 +
    <div class="group center">
 +
<br>
 +
  <img src="https://static.igem.org/mediawiki/2015/6/6b/TLSE_context_fig3.png" style="width:75%;height:55%;" />
 +
</div>
 +
<!-- ANCHOR outB--><div id="outB"></div>
 +
<div class="group center">
 +
<br>
 +
<p><b>Figure 3: Effects exerted by <i>Varroa destructor</i> on honeybee and their hypothetical consequences, source [4]. </b> The parasite may weaken the immune system allowing the proliferation of DWV (Deformed Wing Virus) amoung bees. This proliferation may cause disorders responsible of physical and cognitive impairement.
 +
</p>
  
/* Back to Top
+
</div>
---------------------------------------------------------------------------------------------------------------*/
+
 +
<div class="subtitle">  
 +
<h3>Outbreak of <i>Varroa destructor</i> in the Western World</h3>
 +
</div>
  
 +
<div class="group center">
 +
<div class="one_half first">
 +
<p align="justify" style="font-size:15px;">
 +
 +
The mite varroa was originally an ectoparasite
 +
of <i>Apis cerana</i>, the Asian honey bee. The first
 +
contact between varroa and <i>Apis mellifera</i>
 +
occurred in the 1950s in Asia. During the
 +
following years, the infestation spread to
 +
Europe, Africa and America. The first signs
 +
of this infestation were observed in Europe
 +
and North America in the early 1980s.
 +
The varroa mite is a particularly virulent
 +
parasite of Apis mellifera since the European
 +
honeybee did not have time to develop an adaptive
 +
response to it. </p> <!-- ANCHOR fight--> <div id="fight"></div>   <p align="justify" style="font-size:15px;">In Asia on the contrary, <i>Apis cerana</i>
 +
and <i>Varroa destructor</i> co-evolved over the centuries
 +
and reached a certain balance. Interestingly, the Asian
 +
honeybee is capable of detecting the parasite’s presence
 +
and getting rid of it.
  
/* Transition Fade
 
--------------------------------------------------------------------------------------------------------------- */
 
.row0, .faico a, #mainav *, .shout-content, .overlay ::before, .overlay ::after, .boxedicon a, .clients ul li *, }
 
  
 +
</p>
 +
</div>
  
/*-------------------------------------------------------------------------------------------------------------*/
+
<div class="one_half">
/*-------------------------------------------------------------------------------------------------------------*/
+
/*-------------------------------------------------------------------------------------------------------------*/
+
/*-------------------------------------------------------------------------------------------------------------*/
+
/*-------------------------------------------------------------------------------------------------------------*/
+
  
 +
<img src="https://static.igem.org/mediawiki/2015/a/a6/TLSE_context_fig3bis.png" style="width:50%;">
 +
</div>
  
/* Navigation
+
</div>
---------------------------------------------------------------------------------------------------------------*/
+
<div class="subtitle">
nav ul, nav ol{margin:0; padding:0; list-style:none;}
+
 +
<h3>Means to fight <i>Varroa destructor</i></h3>
 +
</div>
  
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+
<div class="group">
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+
        <p align="right" style="font-size:15px;">
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+
There are three types of methods used to limit varroas impact:
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+
</p>
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+
</div>
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+
<div class="group center">
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+
<p align="justify" style="font-size:15px;">
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+
<b> &#9830; </b>Search of tolerant or resistant bees through selection
#mainav li a{display:block; padding:25px 10px;}
+
<br> <b> &#9830; </b>    Use of “zoo-technic” or “bio-technic” means (Trapping of varroas in empty male broods or installation of fenced entries)
#mainav li li a{border:solid; border-width:0 0 1px 0;font-size:12px;}
+
<br> <b> &#9830; </b>        Use of chemical treatments
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+
</p>
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+
</div>
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<div class="group center">
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+
<p align="justify" style="font-size:15px;">
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+
This last type is the most effective, however it is limited and their
#mainav ul ul{visibility:hidden; opacity:0;}
+
use is complicated since bees generate consumable
#mainav ul li:hover > ul{visibility:visible; opacity:1;}
+
products. The lack of effectiveness of those treatments allows enough varroa to decrease
 +
bee population in hives, beyond dangerous thresholds. The use of such treatments (usually yearly) can eliminate
 +
up to 90% of the varroa population,
 +
which is insufficient to maintain the plague at safe levels.<br><br>
 +
On top of that, such treatments may have serious disadvantages:
 +
</p>
 +
</div>
  
/* Breadcrumb */
+
<div class="group center" style="margin-right:40px;margin-left:40px;">
#breadcrumb{display:block; padding:15px 20px; border-radius:5px 5px 0 0;}
+
<p align="justify" style="font-size:15px;">
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+
<br><b> &#9830; </b>It has been shown that some miticide or
#breadcrumb li{display:inline-block; margin:0 6px 0 0; padding:0;}
+
degradation metabolites from these molecules accumulate in beewax. <br>
#breadcrumb li a{display:block; position:relative; margin:0; padding:0 12px 0 0; font-size:13px;color:rgba(29, 5, 79, 1);}
+
This long term accumulation could explain the emergence of resistant
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+
parasites.
#breadcrumb li:last-child a{margin:0; padding:0;}
+
#breadcrumb li:last-child a::after{display:none;}
+
  
/* Sidebar Navigation */
+
<br><br> <b> &#9830; </b>    Some treatments were shown to have detrimental effects on bees. <br>
.sidebar nav{display:block; width:100%;}
+
Those effects are usually increased if the treatments are misused.
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+
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+
<br><br> <b> &#9830; </b>        Some treatments can contaminate the production of bees and impact the quality of the products.
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+
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+
  
 +
</p>
 +
</div>
  
/* Forms
+
<div class="group center">
---------------------------------------------------------------------------------------------------------------*/
+
<div class="three_quarter first">
form, fieldset, legend{margin:0; padding:0; border:none;}
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<p align="justify" style="font-size:15px;">
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+
Bees are probably one of the most valuable animal species to mankind through
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+
their unique role in pollination. The speed at which they disappear is alarming
label{margin-bottom:5px;}
+
and considering the emergency of the situation our team decided to use the tools
 +
offered by synthetic biology to fight <i>Varroa destructor</i>.
 +
</p>
 +
</div>
 +
<div class="one_quarter">
 +
 +
<img src="https://static.igem.org/mediawiki/2015/f/f6/TLSE_context_fig4.png" style="width:50%;">
 +
</div>
 +
<div id="main2"><!-- ANCHOR main2 --></div>
 +
</div>
  
/* Comment Area */
+
<center><div class="title">  
#comments form{display:block; width:100%;}
+
<h3>Strategy: An ounce of prevention is worth a pound of cure
#comments input, #comments textarea{width:100%; padding:10px; border:1px solid;}
+
</h3>
#comments textarea{overflow:auto;}
+
</div></center>
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+
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+
  
 +
<div class="group center">
 +
<div class="tow_third first">
 +
        <p align="justify" style="font-size:15px;">
  
/* Tables
+
---------------------------------------------------------------------------------------------------------------*/
+
Given the
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+
influence of the varroa mite in bee population decline,
table.df th{table-layout:auto;}
+
we wanted our project to fit into the fight against varroa.
table.df{width:100%; margin-bottom:15px;}
+
<b>Current chemical treatments</b> used to fight varroa are not
table.df th td{padding:10px 15px;}
+
satisfying since they are <b>harmful for bees</b> and human health,
table.df td{border-width:0 1px;}
+
and beekeepers relate a <b>lack of effectiveness</b>.
 +
</p><div id="part1"><!-- ANCHOR 1--></div>
 +
<p align="justify" style="font-size:15px;">
 +
Our project, ApiColi, is an <b>alternative solution</b> in the
 +
fight against varroa in order to <b>establish a balance</b>
 +
between <i>Apis mellifera</i> and <i>Varroa destructor</i>
 +
and thus contribute to the preservation of ecosystems.
 +
</p>
 +
</div>
  
  
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---------------------------------------------------------------------------------------------------------------*/
 
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+
<div class="one_third">
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+
<img src="https://static.igem.org/mediawiki/2015/1/1b/TLSE_WIP.png" style="width:70%;"/>
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+
</div>
.overlay ul li a::before, .overlay ul li a::after{opacity:0;}
+
.overlay ul li a:hover::before, .overlay ul li a:hover::after{opacity:1;}
+
  
 +
      </div>
 +
  <div class="subtitle">  
 +
<h3>Introducing ApiColi
 +
</h3>
 +
</div>
  
/* Font Awesome Social Icons
+
<div class="group center">
---------------------------------------------------------------------------------------------------------------*/
+
        <p align="justify" style="font-size:15px;">
.faico{margin:40px; padding:0; list-style:none;}
+
.faico li{display:inline-block; margin:0 2px 0 0; padding:0; line-height:normal;}
+
Our strategy is based on a genetically modified <i>Escherichia coli</i> strain able to <b>alternate a production</b> of two molecules according to a <b>circadian cycle</b>.
.faico li:last-child{margin-right:0;}
+
.faico a{display:inline-block; width:30px; height:30px; line-height:30px; border-radius:5px; font-size:16px; text-align:center;}
+
  
.faico a{color:inherit; }
+
<b>During the day</b>, while bees are entering or exiting the beehive, <b>butyrate</b> is biosynthesized by our engineered bacteria, ApiColi, in order to <b>attract the varroa</b> fixed on bees. <br>
.faico a:hover{color:#FFFFFF;}
+
  
.faicon-facebook:hover{background-color:#3B5998;}
+
<b>By night</b>, ApiColi produces <b>formate</b>, a well-known molecule <b>lethal to the varroa</b> attracted during the day.<br>
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+
  
 +
Formic acid is currently used to fight varroa, but at <b>very high doses</b>, that also have an <b>impact on bees</b>.
  
/*-------------------------------------------------------------------------------------------------------------*/
+
</p>
/*-------------------------------------------------------------------------------------------------------------*/
+
      </div>
/*-------------------------------------------------------------------------------------------------------------*/
+
/*-------------------------------------------------------------------------------------------------------------*/
+
 
/*-------------------------------------------------------------------------------------------------------------*/
+
 
 +
  <div class="group center">
 +
<br>
 +
  <img src="https://static.igem.org/mediawiki/2015/3/38/TLSE_strategy_fig1.png" style="width:66%;height:580px;" />
 +
</div>
 +
<div id="part2"><!-- ANCHOR 2--></div>
 +
<div class="group center">
 +
<br>
 +
<p> Figure 1: Circadian rhythm switch strategy</p>
 +
</div>
  
  
/* Colours
 
---------------------------------------------------------------------------------------------------------------*/
 
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+
<div class="subtitle">  
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+
<h3>It’s a TrapiColi!
.btn{color:#FFFFFF;}
+
.font_xxl:after{color:inherit; background-color:rgba(9, 181, 31, 0.32);}
+
  
 +
</h3>
 +
</div>
  
/* Rows */
+
<div class="group center">
/* Structure des rows, le row0 est la barre de nav */
+
        <p align="justify" style="font-size:15px;">
.row0{color:#101132; background-color:rgba(245, 245, 245, 1); border-color:rgba(29, 5, 79, 0.81); max-height:650px;}
+
In our project, the engineered bacteria ApiColi will be placed at the bottom of a trap, called <b>TrApiColi</b>,  
.row0:hover{background-color:rgba(245, 245, 245, 1);}
+
positioned at the entrance of the hive. Varroas will be <b>attracted</b> and killed there, leaving the <b>bee colony
.row1, .row1 a{color:#FFFFFF; background-color:#000000;}
+
less exposed </b>to both chemicals, and particularly formic acid.  
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+
</p>
.row3{color:#888888; background-color:white;}
+
</div>
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<div id="part3"><!-- ANCHOR 3--></div>
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<div class="group center">
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+
  <p align="justify" style="font-size:15px;">
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+
Furthermore, at the moment, beehives are only treated with formic acid during <b>spring</b> and <b>fall</b>, when no
 +
honey is being made. This is due to the fact that formic acid weakens bees, but also that when varroa have entered the
 +
brood, they are <b>not affected by the miticide</b>. <br>
 +
The attraction power of ApiColi will enable us to prevent most varroas from entering the beehive and reaching the brood.  
 +
This way, our treatment would be <b>usable</b> even <b>during summer</b>.
 +
</p>
 +
      </div>
  
 +
<div class="subtitle">  
 +
<h3>Apicoli circadian rhythm
  
/* Header */
+
</h3>
#header #logo h1 a{color:inherit;}
+
</div>
  
 +
<div class="group">
 +
        <p align="justify" style="font-size:15px;">
 +
 +
With our project, we want to protect bee colonies from infestation by <i>Varroa destructor</i>. To achieve the establishment of the balance between the mite and honey bees, we need to <b>attract varroas prior their entrance in the beehive</b>, and to kill them. The molecules we chose to do so are butyric acid and formic acid (<i>See sections Attract and Eradicate</i>).
 +
Indeed it was shown that <b>butyric acid</b> is one of the molecules produced by bee's larvae in the brood and has an <b>attractive power</b> towards varroas (based on the Patent <i>Methods for attracting honey bee parasitic mites</i>, US 8647615 B1).
  
/* Shout */
+
</p>
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+
</div>
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+
  
 +
<div class="group center">
 +
<p class="text">
  
/* Latest Work */
+
Concerning <b>formic acid</b>, it is currently used by beekeepers as a treatment against varroa infestation but only during spring and fall and at high doses. Thus it has deleterous effects on bees and beekeepers.
.latest ul, .latest ul li{border-color:#EDEDED;}
+
We also know that bees have a lifecycle based on the sunlight. As we explain above, during the day, bees are active and come in and out of the hive to gather pollen. This is when they bring back the varroas to the hive. During the night on the contrary, bees are less active and stay in the hive.  
  
 +
</p>
 +
</div>
  
/* Content */
+
<div class="group center">
.boxedicon a{color:#56AED4; }
+
<p class="text">
.boxedicon a:hover{color:#FFFFFF;}
+
With all these data, we have been able to design a perfect solution fighting <i>Varroa destructor</i>. A trap containing the engineered bacteria (ApiColi) will be placed at the entrance of the beehive. <b>During the day</b>, Apicoli will <b>produce butyric acid</b> which will diffuse up to where the bees enter the hive. The varroas will be attracted and drop into the trap through a grid. Thus they will never come inside the hive.
 +
</p>
 +
</div>
 +
 +
<div class="group center">
 +
<p class="text">
 +
To be respectful of the bees lifecycle, our bacteria will only <b>produce formic acid at night</b>. This way, the bees will be much less exposed to it since it will be confined to the trap and at much lower doses.
 +
Finally, we do not know if these two molecules effect can interfere, but we do know that they can be harmful to ApiColi if accumulated. That is why alternating production of both acids according to a circadian rhythm will enable us to have a more controlled use of the carbon source, and thus a longer culture length and trap efficiency.
 +
<br>
 +
To do so, based on a paper published in Nature by Levskaya et al., Synthetic biology: engineering <i>E. coli </i> (2005), we used a <b>light switch system </b> composed of two membrane proteins:</p>
 +
</div>
  
 +
<div class="group">
 +
        <ul style="font-size:15px;">
 +
<li>PCB (chromophore phycocyanobilin)</li>
 +
<li>Cph8 : an hybrid protein</li>
 +
<ul style="font-size:15px;">
 +
<li>This protein results from the fusion of red light response domain from Cph1
 +
(phytochrome-like protein cph1) and the intracellular histidin kinase EnvZ (osmolarity sensor protein) from <i>E. coli</i></li>
 +
</ul>
 +
</ul>
 +
</div>
  
/* Footer */
+
<center>
/* Couleur de la barre du footer */
+
<div class="title">
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+
<h3>READ MORE</h3>
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+
</div> </center>
#footer input{color:#FFFFFF; background-color:#3C3C3C;}
+
#footer button{color:#FFFFFF;}
+
e-block;}
+
  
/*Back to Top*/
+
<div class="group center">
 +
<div style="width:20%;">
 +
<a href="https://2015.igem.org/Team:Toulouse/Description/Attract">
 +
<div class="title">
 +
<h3>Attract</h3>
 +
</div>
 +
</a>
 +
</div>
 +
<div style="width:20%;">
 +
<a href="https://2015.igem.org/Team:Toulouse/Description/Eradicate">
 +
<div class="title">
 +
<h3>Eradicate</h3>
 +
</div>
 +
</a>
 +
</div>
 +
<div style="width:20%;">
 +
<a href="https://2015.igem.org/Team:Toulouse/Description/Regulation">
 +
<div class="title">
 +
<h3>Regulation</h3>
 +
</div>
 +
</a>
 +
</div>
 +
<div style="width:20%;">
 +
<a href="https://2015.igem.org/Team:Toulouse/Design">
 +
<div class="title">
 +
<h3>Device: TrApiColi</h3>
 +
</div>
 +
</a>
 +
</div>
 +
<div style="width:20%;">
 +
<a href="https://2015.igem.org/Team:Toulouse/Results">
 +
<div class="title">
 +
<h3>Results</h3>
 +
</div>
 +
</a>
 +
</div>
 +
</div>
  
  
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+
  </main>
 +
</div>
 +
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<div class="container clear" style="padding-top:30px;">
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<center><p class="maintitle">  
 +
References
 +
</p></center>
 +
<br>
 +
<div class="clear">
 +
<ul>
 +
<li>
 +
[1] Yves Le Conte, Marion Ellis, Wolfgang RITTER. Varroa mites and honey bee health: can Varroa explain part of the colony losses? Apidologie, Springer Verlag (Germany), 2010, 41 (3), <10.1051/apido/2010017>.</li>
  
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+
<li>
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+
[2] Sammataro, D., Gerson, U., Needham, G., 2000. Parasitic mites of honey bees life history implications and impact. Annual Review of Entomology 45, 519-548
 +
</li>
  
/*ALL TABLE ATTRIBUTES*/
+
<li>
/* Tables + Comments
+
[3] Peng, Y-S., Fang, Y., Xu, S., Ge, L., 1987. The resistance mechanism of the Asian honey bee, Apis cerana Fabr., to an ectoparasitic mite, Varroa jacobsoni Oudemans. Journal of invertebrate pathology 49, 54-60.
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+
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+
  
 +
<li>
 +
[4] S, L, P Wendling. 2012. Varroa destructor (ANDERSON ET TRUEMAN, 2000), UN ACARIEN ECTOPARASITE DE L’ABEILLE DOMESTIQUE Apis mellifera LINNAEUS, 1758. REVUE BIBLIOGRAPHIQUE ET CONTRIBUTION À L’ÉTUDE DE SA REPRODUCTION.</li>
  
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[5] Yves Le Conte, Marion Ellis, Wolfgang RITTER. Varroa mites and honey bee health: can Varroa explain part of the colony losses? Apidologie, Springer Verlag (Germany), 2010, 41 (3), <10.1051/apido/2010017>.</li>
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[6] Sammataro, D., Gerson, U., Needham, G., 2000. Parasitic mites of honey bees life history implications and impact. Annual Review of Entomology 45, 519-548
 +
</li>
  
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+
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[7] Peng, Y-S., Fang, Y., Xu, S., Ge, L., 1987. The resistance mechanism of the Asian honey bee, Apis cerana Fabr., to an ectoparasitic mite, Varroa jacobsoni Oudemans. Journal of invertebrate pathology 49, 54-60.  
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[8] S, L, P Wendling. 2012. Varroa destructor (ANDERSON ET TRUEMAN, 2000), UN ACARIEN ECTOPARASITE DE L’ABEILLE DOMESTIQUE Apis mellifera LINNAEUS, 1758. REVUE BIBLIOGRAPHIQUE ET CONTRIBUTION À L’ÉTUDE DE SA REPRODUCTION.</li>
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[9] Peter EA Teal, Adrian J. Duehl, Mark J. Carroll. The United States Of America, As Represented By The Secretary Of Agriculture. 2014. Methods for attracting honey bee parasitic mites, US 8647615 B1. </li>
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 +
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Revision as of 17:00, 16 September 2015

iGEM Toulouse 2015

Project description



Context: Bees and pollination

Bees excel in pollination and thus play an essential role in maintaining ecosystems by participating to the production of seeds. Bees harvest pollen and use proteins to feed their offspring. Moreover, by gathering pollen, they allow the reproduction of 84 % of the plants that grow in Europe. Bees are also responsible for the production of 35 % of edible fruits and vegetables. Among all bees, the domestic bee, Apis mellifera, which builds its swarm in hives provided by man, is directly responsible for the production of honey, wax and propolis.



Figure 1: Examples of products dependent on bee pollination

According to the French INRA (National Institute of Agricultural Research), the bee extinction would represent an economical worldwide loss of 163 billion USD. This huge number reflects the importance of the bees in the global ecosystem.

Domestic bees


There are three types of bees living in a beehive: the worker bees, the queen bee and the male bees. In the colony, the work is divided in such a way that each caste is specialized in its activities. The worker bees are infertile female and represent the most numerous caste in the beehive. Their main activities are to clean the beehive cells, ventilate the beehive, cap the beehive cells containing the bee eggs, feed the larvae, gather pollen and defend the colony.

The queen bee ensures the renewal of the bee colony. The male bees represent the infertilized eggs. Their main activity is the reproductive function with the queen bee outside of the beehive.

The Queen, a Worker and a male (coming soon)

Collapse of Bees


Over the last few decades, a decline in the honeybee population has been observed. In Europe 24% of the domestic bee species are threatened of extinction. The more indicators you consider, the more alarming the situation appears. Bee loss has a multifactorial origin. Among these factors, the Colony Collapse Disorder (CCD) is one of the most important. CCD corresponds to a massive loss of bee colonies. The causes of this syndrome are numerous: pesticides, viruses, parasites… among those, a mite wisely named Varroa destructor is one of the bees fiercest enemies.

Varroa destructor

Varroa destructor is an obligatory ectoparasite of bees. This means it is an external parasite and it cannot survive without its host, the bee. The varroa development cycle takes place in the beehive cells in parallel of the bee development cycle. The key individual of the varroa development cycle is the adult female commonly named “founder”. The founder reproduces exclusively in a brood cell that represents the beehive cell containing a bee larva. The founder reproduction occurs during the phoretic phase where the varroa is moved from one bee colony to the other by an adult bee.



Figure 2: Synchronized life cycle of Honeybees and Varroa destructor. Phoretic phase is the phase were varroa is fixed on an adult bee. This phase is followed by the reproductive phase which takes place in bee broods. Phoretic phase then restarts when the imago (last embryonic stage of the bee) emerges from the brood.

The bee infestation by varroa occurs between the egg laying of the queen bee in beehive cells and the encapsulation of the bee larva inside the beehive cell. After feeding off the larva the founder will start laying varroa eggs. The newborn varroas will develop themselves, go through different stages and will reproduce within the brood cell. When the mature bee finally emerges from the brood cell, female varroas will stick themselves to it therefore becoming “phoretic”. The Varroa destructor itself is of significant danger. However it is the association with the Deformed Wing Virus (DWV) that makes him one of the most virulent threats for honeybees. The study of the interplay between the mite and the DWV shows that an intense viral replication is triggered by the mite feeding off the bee, leading to a devastating viral outbreak.



Figure 3: Effects exerted by Varroa destructor on honeybee and their hypothetical consequences, source [4]. The parasite may weaken the immune system allowing the proliferation of DWV (Deformed Wing Virus) amoung bees. This proliferation may cause disorders responsible of physical and cognitive impairement.

Outbreak of Varroa destructor in the Western World

The mite varroa was originally an ectoparasite of Apis cerana, the Asian honey bee. The first contact between varroa and Apis mellifera occurred in the 1950s in Asia. During the following years, the infestation spread to Europe, Africa and America. The first signs of this infestation were observed in Europe and North America in the early 1980s. The varroa mite is a particularly virulent parasite of Apis mellifera since the European honeybee did not have time to develop an adaptive response to it.

In Asia on the contrary, Apis cerana and Varroa destructor co-evolved over the centuries and reached a certain balance. Interestingly, the Asian honeybee is capable of detecting the parasite’s presence and getting rid of it.

Means to fight Varroa destructor

There are three types of methods used to limit varroas impact:

Search of tolerant or resistant bees through selection
Use of “zoo-technic” or “bio-technic” means (Trapping of varroas in empty male broods or installation of fenced entries)
Use of chemical treatments

This last type is the most effective, however it is limited and their use is complicated since bees generate consumable products. The lack of effectiveness of those treatments allows enough varroa to decrease bee population in hives, beyond dangerous thresholds. The use of such treatments (usually yearly) can eliminate up to 90% of the varroa population, which is insufficient to maintain the plague at safe levels.

On top of that, such treatments may have serious disadvantages:


It has been shown that some miticide or degradation metabolites from these molecules accumulate in beewax.
This long term accumulation could explain the emergence of resistant parasites.

Some treatments were shown to have detrimental effects on bees.
Those effects are usually increased if the treatments are misused.

Some treatments can contaminate the production of bees and impact the quality of the products.

Bees are probably one of the most valuable animal species to mankind through their unique role in pollination. The speed at which they disappear is alarming and considering the emergency of the situation our team decided to use the tools offered by synthetic biology to fight Varroa destructor.

Strategy: An ounce of prevention is worth a pound of cure

Given the influence of the varroa mite in bee population decline, we wanted our project to fit into the fight against varroa. Current chemical treatments used to fight varroa are not satisfying since they are harmful for bees and human health, and beekeepers relate a lack of effectiveness.

Our project, ApiColi, is an alternative solution in the fight against varroa in order to establish a balance between Apis mellifera and Varroa destructor and thus contribute to the preservation of ecosystems.

Introducing ApiColi

Our strategy is based on a genetically modified Escherichia coli strain able to alternate a production of two molecules according to a circadian cycle. During the day, while bees are entering or exiting the beehive, butyrate is biosynthesized by our engineered bacteria, ApiColi, in order to attract the varroa fixed on bees.
By night, ApiColi produces formate, a well-known molecule lethal to the varroa attracted during the day.
Formic acid is currently used to fight varroa, but at very high doses, that also have an impact on bees.



Figure 1: Circadian rhythm switch strategy

It’s a TrapiColi!

In our project, the engineered bacteria ApiColi will be placed at the bottom of a trap, called TrApiColi, positioned at the entrance of the hive. Varroas will be attracted and killed there, leaving the bee colony less exposed to both chemicals, and particularly formic acid.

Furthermore, at the moment, beehives are only treated with formic acid during spring and fall, when no honey is being made. This is due to the fact that formic acid weakens bees, but also that when varroa have entered the brood, they are not affected by the miticide.
The attraction power of ApiColi will enable us to prevent most varroas from entering the beehive and reaching the brood. This way, our treatment would be usable even during summer.

Apicoli circadian rhythm

With our project, we want to protect bee colonies from infestation by Varroa destructor. To achieve the establishment of the balance between the mite and honey bees, we need to attract varroas prior their entrance in the beehive, and to kill them. The molecules we chose to do so are butyric acid and formic acid (See sections Attract and Eradicate). Indeed it was shown that butyric acid is one of the molecules produced by bee's larvae in the brood and has an attractive power towards varroas (based on the Patent Methods for attracting honey bee parasitic mites, US 8647615 B1).

Concerning formic acid, it is currently used by beekeepers as a treatment against varroa infestation but only during spring and fall and at high doses. Thus it has deleterous effects on bees and beekeepers. We also know that bees have a lifecycle based on the sunlight. As we explain above, during the day, bees are active and come in and out of the hive to gather pollen. This is when they bring back the varroas to the hive. During the night on the contrary, bees are less active and stay in the hive.

With all these data, we have been able to design a perfect solution fighting Varroa destructor. A trap containing the engineered bacteria (ApiColi) will be placed at the entrance of the beehive. During the day, Apicoli will produce butyric acid which will diffuse up to where the bees enter the hive. The varroas will be attracted and drop into the trap through a grid. Thus they will never come inside the hive.

To be respectful of the bees lifecycle, our bacteria will only produce formic acid at night. This way, the bees will be much less exposed to it since it will be confined to the trap and at much lower doses. Finally, we do not know if these two molecules effect can interfere, but we do know that they can be harmful to ApiColi if accumulated. That is why alternating production of both acids according to a circadian rhythm will enable us to have a more controlled use of the carbon source, and thus a longer culture length and trap efficiency.
To do so, based on a paper published in Nature by Levskaya et al., Synthetic biology: engineering E. coli (2005), we used a light switch system composed of two membrane proteins:

  • PCB (chromophore phycocyanobilin)
  • Cph8 : an hybrid protein
    • This protein results from the fusion of red light response domain from Cph1 (phytochrome-like protein cph1) and the intracellular histidin kinase EnvZ (osmolarity sensor protein) from E. coli

READ MORE

References


  • [1] Yves Le Conte, Marion Ellis, Wolfgang RITTER. Varroa mites and honey bee health: can Varroa explain part of the colony losses? Apidologie, Springer Verlag (Germany), 2010, 41 (3), <10.1051/apido/2010017>.
  • [2] Sammataro, D., Gerson, U., Needham, G., 2000. Parasitic mites of honey bees life history implications and impact. Annual Review of Entomology 45, 519-548
  • [3] Peng, Y-S., Fang, Y., Xu, S., Ge, L., 1987. The resistance mechanism of the Asian honey bee, Apis cerana Fabr., to an ectoparasitic mite, Varroa jacobsoni Oudemans. Journal of invertebrate pathology 49, 54-60.
  • [4] S, L, P Wendling. 2012. Varroa destructor (ANDERSON ET TRUEMAN, 2000), UN ACARIEN ECTOPARASITE DE L’ABEILLE DOMESTIQUE Apis mellifera LINNAEUS, 1758. REVUE BIBLIOGRAPHIQUE ET CONTRIBUTION À L’ÉTUDE DE SA REPRODUCTION.
  • [5] Yves Le Conte, Marion Ellis, Wolfgang RITTER. Varroa mites and honey bee health: can Varroa explain part of the colony losses? Apidologie, Springer Verlag (Germany), 2010, 41 (3), <10.1051/apido/2010017>.
  • [6] Sammataro, D., Gerson, U., Needham, G., 2000. Parasitic mites of honey bees life history implications and impact. Annual Review of Entomology 45, 519-548
  • [7] Peng, Y-S., Fang, Y., Xu, S., Ge, L., 1987. The resistance mechanism of the Asian honey bee, Apis cerana Fabr., to an ectoparasitic mite, Varroa jacobsoni Oudemans. Journal of invertebrate pathology 49, 54-60.
  • [8] S, L, P Wendling. 2012. Varroa destructor (ANDERSON ET TRUEMAN, 2000), UN ACARIEN ECTOPARASITE DE L’ABEILLE DOMESTIQUE Apis mellifera LINNAEUS, 1758. REVUE BIBLIOGRAPHIQUE ET CONTRIBUTION À L’ÉTUDE DE SA REPRODUCTION.
  • [9] Peter EA Teal, Adrian J. Duehl, Mark J. Carroll. The United States Of America, As Represented By The Secretary Of Agriculture. 2014. Methods for attracting honey bee parasitic mites, US 8647615 B1.