Difference between revisions of "Team:Aalto-Helsinki/Design"
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<p>Before trying to grow new cells in a reactor, the strain had to be tested with vial-scale cultivations. In this way we could gather information about the induction, cell growth rates in TB-media, and some estimates of how much time is needed for propane formation after adding IPTG. At the same time we could practise the usage of gas gromatography/mass spectrometry and make proper standards for propane detection. Basically, terrific broth (TB) containing induced bacteria would be added into 22 ml GC-vials. The cells are incubated different lenghts of time and propane accumulates into the head-space of the vial where the injection and analysis would happen. The <a href="https://static.igem.org/mediawiki/2015/4/4f/Aalto-Helsinki_cultivation_for_GC.pdf" target="_blank">protocol</a> contains more detailed information for the preparation of samples. </p> | <p>Before trying to grow new cells in a reactor, the strain had to be tested with vial-scale cultivations. In this way we could gather information about the induction, cell growth rates in TB-media, and some estimates of how much time is needed for propane formation after adding IPTG. At the same time we could practise the usage of gas gromatography/mass spectrometry and make proper standards for propane detection. Basically, terrific broth (TB) containing induced bacteria would be added into 22 ml GC-vials. The cells are incubated different lenghts of time and propane accumulates into the head-space of the vial where the injection and analysis would happen. The <a href="https://static.igem.org/mediawiki/2015/4/4f/Aalto-Helsinki_cultivation_for_GC.pdf" target="_blank">protocol</a> contains more detailed information for the preparation of samples. </p> | ||
− | <p>Two samples were incubated for 17 h with 50 RPM shaking in 22 ml vials. Propane concentrations were <b>111 μg/l</b> and <b>88 μg/l</b> where the litres were as in the volume of cultivation media. Furthermore, strain's growth rate was significant as the OD600 (1 ml cuvettes) increased from 0.1425 to 0.5212 for 1h 10 min time scale. The rate was assumed to be much lower because TB-media contained four different antibiotics which were needed to keep plasmids inside of bacteria. Details about standards, peaks etc. for GC/MS can be seen in <a href="https://static.igem.org/mediawiki/2015/1/1e/Aalto-Helsinki_IGEM_Gas_chromatography_standards_information_diagrams.xls" target="_blank">this file</a>. The GC/MS analysis and calculcations were done by the personnel of VTT.</p> | + | <p>Two samples were incubated for 17 h with 50 RPM shaking in 22 ml vials. Propane concentrations were <b>111 μg/l</b> and <b>88 μg/l</b> where the litres were as in the volume of cultivation media. Furthermore, strain's growth rate was significant as the OD600 (1 ml cuvettes) increased from 0.1425 to 0.5212 for 1h 10 min time scale. The rate was assumed to be much lower because TB-media contained four different antibiotics which were needed to keep plasmids inside of bacteria. Details about standards, peaks etc. for GC/MS can be seen in <a href="https://static.igem.org/mediawiki/2015/1/1e/Aalto-Helsinki_IGEM_Gas_chromatography_standards_information_diagrams.xls" target="_blank">this file</a>. The GC/MS analysis and calculcations were done by the personnel of VTT, which is mentioned in the Attributions page <a href="https://2015.igem.org/Team:Aalto-Helsinki/Attributions">Attributions page</a>.</p> |
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Revision as of 18:12, 16 September 2015