Difference between revisions of "Team:HUST-China/Achievements"

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Revision as of 15:20, 18 September 2015

Team:HUST-China:Safety


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Achivements


As for The Bronze Medal:


√ Register for iGEM, have a great summer, and plan to have a good time at the Giant Jamboree.

√ Successfully complete this year‘s judging form.

√ Create and share a Description of the team's project using the iGEM wiki, and document the team's parts using the Registry of Standard Biological Parts.

√ Prepare a poster and a talk for the iGEM Jamboree.

√ Create a page on our wiki with clear attribution of each aspect of our project, and clearly attribute work done by ourselves.

√ Document more than one new standard BioBrick Parts or Devices central to our project and submit these parts to the iGEM Registry.

Type Part Number Notes
Coding BBa_K1592000 LIP2
Coding BBa_K1592001 Mcfp3
Coding BBa_K1592002 YLcwp3
Coding BBa_K1592003 LIP2+Mcfp3
Coding BBa_K1592004 Php4d
Coding BBa_K1592005 BD-CRY2
Coding BBa_K1592006 AD-CIB1

As for The Sliver Medal:


√ Experimentally validate that at least one new BioBrick Part or Device of your own design and construction works as expected.

√ Document the characterization of new parts in the Main Page section of the Registry entry for that Part/Device, and submit these new parts to the iGEM Parts Registry.

√ In our Human Practice this year, we majorly concentrated on promoting the concept of synthetic biology through interdisciplinary communication and field practice at fishery industry. We communicated with Professor Zheng Junjie from Civil Engineering College, visited Zhejiang Marine Fisheries Research Institute(MFRI) and took a field trip to Zhoushan Fishery.

Click here to see more details.

Type Part Number Notes
Coding BBa_K1592007 His-Si-tag1
Coding BBa_K1592008 His-Si-tag2
Coding BBa_K1592009 His-Si-tag3
Coding BBa_K1592010 Si-tag12
Coding BBa_K1592011 Si-tag23
Coding BBa_K1592012 Si-tag13
Coding BBa_K1592013 His-Si-tag1L3
Coding BBa_K1592014 Si-tag123
Coding BBa_K1592015 CRY2
Coding BBa_K1592016 CIB1
Coding BBa_K1592017 XPR2+Mcfp3
Coding BBa_K1592018 Pgal1+rox1+cyc1
Coding BBa_K1592019 Panb1+XPR2 pre-Mcfp3

As for The Gold Medal:


√ After deciding the main application of our kit we want to carry out, we visited Professor Weiding Wang, an expert in aquafarm and artificial reefs form Zhejiang Marine Fisheries Research Institute (MFRI) and issued questionnaires and conducted interviews among local fishermen and practitioners. During this process, we gained a better perception of the development of synthetic biology in China, and also learned valuable practical knowledge from experts, public.

Click here to see more details.

√ This summer, we helped WHU team constructing a standardized plasmid C1-pSB1C3 when they met difficulties. And we helped WHU-China team and HZAU-China lyophilize the samples before shipment as their lyophilizer cannot handle the 96well plate.

√ We found two SpeI illegal sites in Part BBa_K191007, so we removed that by site-directed mutagenesis and created 3 different mutants of Part BBa_K191007. We inserted RBS + GFP for test and verify, but unfortunately we can’t get the competitive inhibitor of tryptophan in the formation of the specific Apo repressor. Moreover, we also documented the Pgal1 promoter (BBa_K1144001) and Gal4 binding domain (BBa_K801032).

Type Part Number Notes
Regulatory BBa_K1592020 Ptrp mutant1
Regulatory BBa_K1592021 Ptrp mutant2
Regulatory BBa_K1592022 Ptrp mutant3
Composite BBa_K1592023 Ptrp mutant1+RBS+GFP
Composite BBa_K1592024 Ptrp mutant2+RBS+GFP
Composite BBa_K1592025 Ptrp mutant3+RBS+GFP

√ To test and simulate how well could our project working under real-world conditions, we designed an experiment which combined biology and civil engineering in the lab. With the device we DIY, the simulation of small-scale’s production got a good result beyond our expectation. The prototype of our project can truly solve the problem to a certain extent in an untraditional way.

Click here to see more details.

Experimental Achievements:


√ Successfully proved that our Light control system works.

√ Used the fluorescence immunoassay to verify the success of cell surface display system. 

√ Constructed a series of silica-tag proteins containing different structural truncations, and tested their different combining effects with silica.

√ Successfully identified the flocculating protein MCFP3 that is secreted outside the Y.lipolytca JMY1212 cells by SDS-PAGE.

√ Designed an experiment which combined biology and civil engineering to simulate the effect of our project. The results significantly proved that our project works in the real-world conditions.

Click here to see more details.

Modeling Achievements:


 On cellular level:

√ Meet the need of our experiment and solve the problem of which Darkness Induction System to choose.

√ Predict the final scope and concentration of Euk.Cement and Mcfp3 permeation, and provided the model with some data by carrying out several experiments and amend the model significantly.

On ecosystem level:

√ Put forward an algorithm special for diffusion to simulate the real-world situation and guide our verification design

√ Every modeling about diffusion and permeation could learn from our model.

Click here to see more details.

Policy and Practice Achievements:


 In our Human Practice this year, we majorly concentrated on promoting the concept of synthetic biology through interdisciplinary communication and field practice at fishery industry. During this process, we gained a better perception of the development of synthetic biology in China, and also learned valuable practical knowledge from experts, public and other iGEM teams. :

√ Communication with experts in different disciplines

√ Field practice to Zhoushan Fishery

√ Questionnaire on Fishery Development and Ecological Restoration at Zhoushan Fishery

√ Project-in-action:

1) meeting with other iGEM teams

2)Meetup in Wuhan

3)2015 iGEM conference held by NCTU

4)CCiC (Central China iGEM Consortium)