Difference between revisions of "Team:Aalto-Helsinki/Kinetics"

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      <ul id="sidenav" class="nav nav-stacked"><!-- nav-pills if we want rounded corners -->
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        <li><a href="#kinetics"><h3>Kinetics</h3></a></li>
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        <li><a href="#atob"><h4>AtoB</h4></a></li>
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        <li><a href="#fadb2"><h4>FadB2</h4></a></li>
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        <li><a href="#hdb"><h4>Hdb</h4></a></li>
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        <li><a href="#crt"><h4>Crt</h4></a></li>
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        <li><a href="#ter"><h4>Ter</h4></a></li>
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        <li><a href="#ycia"><h4>YciA</h4></a></li>
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        <li><a href="#car"><h4>Car</h4></a></li>
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        <li><a href="#sfp"><h4>Sfp</h4></a></li>
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        <li><a href="#ado"><h4>Ado</h4></a></li>
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        <li><a href="#otherconstants"><h4>Other<br/>constants</h4></a></li>
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      </ul>
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<div class = "inner-container" >
  
  
<h1>Kinetics</h1>
 
  
<h2>General</h2>
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<h1 id="kinetics">Kinetics</h1>
  
<h3>AtoB</h3>
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<h2 id="atob">AtoB</h2>
  
 
<table class="table table-bordered">
 
<table class="table table-bordered">
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</table>
 
</table>
  
<h3>FadB2</h3>
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<h2 id="fadb2">FadB2</h2>
  
 
<table class="table table-bordered">
 
<table class="table table-bordered">
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</table>
 
</table>
  
<h3>Hdb</h3>
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<h2 id="hdb">Hdb</h2>
  
 
<table class="table table-bordered">
 
<table class="table table-bordered">
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</table>
 
</table>
  
<h3>Crt</h3>
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<h2 id="crt">Crt</h2>
  
 
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<table class="table table-bordered">
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</table>
 
</table>
  
<h3>Ter</h3>
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<h2 id="ter">Ter</h2>
  
 
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<table class="table table-bordered">
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</table>
 
</table>
  
<h3>YciA</h3>
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<h2 id="ycia">YciA</h2>
  
 
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<table class="table table-bordered">
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</table>
 
</table>
  
<h3>Car</h3>
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<h2 id="car">Car</h2>
  
  
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</table>
 
</table>
  
<h3>Sfp</h3>
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<h2 id="sfp">Sfp</h2>
<h3>Ado</h3>
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<h2 id="ado">Ado</h2>
  
 
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<table class="table table-bordered">
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</table>
 
</table>
  
<h2>Constants</h2>
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<h2 id="otherconstants">Other Constants</h2>
  
 
<p>This is a table of already known typical concentrations in a cell that we use in our model.</p>
 
<p>This is a table of already known typical concentrations in a cell that we use in our model.</p>

Revision as of 06:57, 5 August 2015

Kinetics

AtoB

Constant

Value

Source

To note

\( K_{cat}^{AtoB} \)

0.001 jtn

link

Forward reaction

\( K_{M}^{AtoB:Acetyl\text{-}CoA} \)

0.001 jtn

link

Is there something special about this?

FadB2

Constant

Value

Source

To note

\( K_{cat}^{FadB2} \)

0.001 jtn

link

Forward reaction

\( K_{cat}^{FadB2} \)

0.001 jtn

link

Reverse reaction

\( K_{M}^{FadB2:Acetoacetyl\text{-}CoA} \)

0.001 jtn

link

Forward reaction

\( K_{cat}^{FadB2:NADPH} \)

0.001 jtn

link

Forward reaction

\( K_{cat}^{FadB2:3\text{-}Hydroxybutyryl\text{-}CoA} \)

0.001 jtn

link

Reverse reaction

\( K_{cat}^{FadB2:NADP^+} \)

0.001 jtn

link

Reverse reaction

Hdb

Constant

Value

Source

To note

\( K_{cat}^{Hdb} \)

336.4 1/min

link

Forward reaction

\( K_{M}^{Hdb:Acetoacetyl\text{-}CoA} \)

5e-5 mol/l

link

Is there something special about this?

\( K_{M}^{Hdb:NADPH} \)

7e-5 mol/l

link

Is there something special about this?

Crt

Constant

Value

Source

To note

\( K_{cat}^{Crt} \)

1310.8 1/min

link

Forward reaction

\( K_{M}^{Crt:3\text{-}Hydroxybutyryl\text{-}CoA} \)

3e-5 mol/l

link

Is there something special about this?

Ter

Constant

Value

Source

To note

\( K_{cat}^{Ter} \)

1881.6 1/min

link

Forward reaction

\( K_{M}^{Ter:Crotonyl\text{-}CoA} \)

2.7e-06 mol/l

link

Is there something special about this?

\( K_{M}^{Ter:NADH} \)

5.2e-06 mol/l

link

Is there something special about this?

\( K_{I}^{Ter:Butyryl\text{-}CoA} \)

1.98e-07 mol/l

link

Is there something special about this?

YciA

Constant

Value

Source

To note

\( K_{cat}^{YciA} \)

1320 1/min

link

Forward reaction

\( K_{M}^{YciA:Butyryl\text{-}CoA} \)

3.5e-06 mol/l

link

Is there something special about this?

Car

Constant

Value

Source

To note

\( K_{cat}^{Car} \)

150 1/min

link

Forward reaction

\( K_{M}^{Car:Butyrate} \)

0.013 mol/l

link

Is there something special about this?

\( K_{M}^{Car:NADPH} \)

4.8e-05 mol/l

link

Is there something special about this?

\( K_{I}^{Car:ATP} \)

0.000115 mol/l

link

Is there something special about this?

Sfp

Ado

Constant

Value

Source

To note

\( K_{cat}^{Ado} \)

0.215 1/min

link

Forward reaction

\( K_{M}^{Ado:Butyraldehyde} \)

0.0101 mol/l

link

Is there something special about this?

Other Constants

This is a table of already known typical concentrations in a cell that we use in our model.

Constant

Value

Source

To note

[Acetyl-CoA]

0.00061 mol/l

link

Is there something special about this?

[Acetoacetyl-CoA]

2.2e-05 mol/l

link

Is there something special about this?

[CoA]

0.00014 mol/l

link

Is there something special about this?

[NADPH]

00012 mol/l

link

Is there something special about this?

[NADP\( ^+\)]

2.1e-06 mol/l

link

Is there something special about this?

[NADH]

8.3e-05 mol/l

link

Is there something special about this?

[NAD\( ^+\)]

0.0026 mol/l

link

Is there something special about this?

[ATP]

0.0096 mol/l

link

Is there something special about this?

[AMP]

0.00028 mol/l

link

Is there something special about this?

[H\( _2\)O]

38.85 mol/l

link

Is there something special about this?