Difference between revisions of "Team:Aalto-Helsinki/Kinetics"

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     <tr>
 
     <tr>
 
       <td><p>\( K_{cat}^{AtoB} \)</p></td>
 
       <td><p>\( K_{cat}^{AtoB} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>10653 1/min</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Forward reaction</p></td>
 
       <td><p>Forward reaction</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{M}^{AtoB:Acetyl\text{-}CoA} \)</p></td>
 
       <td><p>\( K_{M}^{AtoB:Acetyl\text{-}CoA} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>0.00047 mol/l</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Is there something special about this?</p></td>
 
       <td><p>Is there something special about this?</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{cat}^{FadB2} \)</p></td>
 
       <td><p>\( K_{cat}^{FadB2} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>0.677 1/min</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Forward reaction</p></td>
 
       <td><p>Forward reaction</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{cat}^{FadB2} \)</p></td>
 
       <td><p>\( K_{cat}^{FadB2} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>0.723 1/min</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Reverse reaction</p></td>
 
       <td><p>Reverse reaction</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{M}^{FadB2:Acetoacetyl\text{-}CoA} \)</p></td>
 
       <td><p>\( K_{M}^{FadB2:Acetoacetyl\text{-}CoA} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>65.6 mol/l</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Forward reaction</p></td>
 
       <td><p>Forward reaction</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{cat}^{FadB2:NADPH} \)</p></td>
 
       <td><p>\( K_{cat}^{FadB2:NADPH} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>50 mol/l</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Forward reaction</p></td>
 
       <td><p>Forward reaction</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{cat}^{FadB2:3\text{-}Hydroxybutyryl\text{-}CoA} \)</p></td>
 
       <td><p>\( K_{cat}^{FadB2:3\text{-}Hydroxybutyryl\text{-}CoA} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>43.5 mol/l</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Reverse reaction</p></td>
 
       <td><p>Reverse reaction</p></td>
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     <tr>
 
     <tr>
 
       <td><p>\( K_{cat}^{FadB2:NADP^+} \)</p></td>
 
       <td><p>\( K_{cat}^{FadB2:NADP^+} \)</p></td>
−
       <td><p>0.001 jtn</p></td>
+
       <td><p>29.5 mol/l</p></td>
 
       <td><a><p>link</p></a></td>
 
       <td><a><p>link</p></a></td>
 
       <td><p>Reverse reaction</p></td>
 
       <td><p>Reverse reaction</p></td>

Revision as of 07:44, 5 August 2015

Kinetics

AtoB

Constant

Value

Source

To note

\( K_{cat}^{AtoB} \)

10653 1/min

link

Forward reaction

\( K_{M}^{AtoB:Acetyl\text{-}CoA} \)

0.00047 mol/l

link

Is there something special about this?

FadB2

Constant

Value

Source

To note

\( K_{cat}^{FadB2} \)

0.677 1/min

link

Forward reaction

\( K_{cat}^{FadB2} \)

0.723 1/min

link

Reverse reaction

\( K_{M}^{FadB2:Acetoacetyl\text{-}CoA} \)

65.6 mol/l

link

Forward reaction

\( K_{cat}^{FadB2:NADPH} \)

50 mol/l

link

Forward reaction

\( K_{cat}^{FadB2:3\text{-}Hydroxybutyryl\text{-}CoA} \)

43.5 mol/l

link

Reverse reaction

\( K_{cat}^{FadB2:NADP^+} \)

29.5 mol/l

link

Reverse reaction

Hdb

Constant

Value

Source

To note

\( K_{cat}^{Hdb} \)

336.4 1/min

link

Forward reaction

\( K_{M}^{Hdb:Acetoacetyl\text{-}CoA} \)

5e-5 mol/l

link

Is there something special about this?

\( K_{M}^{Hdb:NADPH} \)

7e-5 mol/l

link

Is there something special about this?

Crt

Constant

Value

Source

To note

\( K_{cat}^{Crt} \)

1310.8 1/min

link

Forward reaction

\( K_{M}^{Crt:3\text{-}Hydroxybutyryl\text{-}CoA} \)

3e-5 mol/l

link

Is there something special about this?

Ter

Constant

Value

Source

To note

\( K_{cat}^{Ter} \)

1881.6 1/min

link

Forward reaction

\( K_{M}^{Ter:Crotonyl\text{-}CoA} \)

2.7e-06 mol/l

link

Is there something special about this?

\( K_{M}^{Ter:NADH} \)

5.2e-06 mol/l

link

Is there something special about this?

\( K_{I}^{Ter:Butyryl\text{-}CoA} \)

1.98e-07 mol/l

link

Is there something special about this?

YciA

Constant

Value

Source

To note

\( K_{cat}^{YciA} \)

1320 1/min

link

Forward reaction

\( K_{M}^{YciA:Butyryl\text{-}CoA} \)

3.5e-06 mol/l

link

Is there something special about this?

Car

Constant

Value

Source

To note

\( K_{cat}^{Car} \)

150 1/min

link

Forward reaction

\( K_{M}^{Car:Butyrate} \)

0.013 mol/l

link

Is there something special about this?

\( K_{M}^{Car:NADPH} \)

4.8e-05 mol/l

link

Is there something special about this?

\( K_{I}^{Car:ATP} \)

0.000115 mol/l

link

Is there something special about this?

Sfp

Ado

Constant

Value

Source

To note

\( K_{cat}^{Ado} \)

0.215 1/min

link

Forward reaction

\( K_{M}^{Ado:Butyraldehyde} \)

0.0101 mol/l

link

Is there something special about this?

Other Constants

This is a table of already known typical concentrations in a cell that we use in our model.

Constant

Value

Source

To note

[Acetyl-CoA]

0.00061 mol/l

link

Is there something special about this?

[Acetoacetyl-CoA]

2.2e-05 mol/l

link

Is there something special about this?

[CoA]

0.00014 mol/l

link

Is there something special about this?

[NADPH]

00012 mol/l

link

Is there something special about this?

[NADP\( ^+\)]

2.1e-06 mol/l

link

Is there something special about this?

[NADH]

8.3e-05 mol/l

link

Is there something special about this?

[NAD\( ^+\)]

0.0026 mol/l

link

Is there something special about this?

[ATP]

0.0096 mol/l

link

Is there something special about this?

[AMP]

0.00028 mol/l

link

Is there something special about this?

[H\( _2\)O]

38.85 mol/l

link

Is there something special about this?