Difference between revisions of "Team:TCU Taiwan/Project/Experimental"
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為了能夠有效的為了能夠使我們更有效地拿到我們的指定抗菌肽,我們在設計序列時在AMPs的N-terminal加了一個signal peptide。這個signal peptide是來自於 | 為了能夠有效的為了能夠使我們更有效地拿到我們的指定抗菌肽,我們在設計序列時在AMPs的N-terminal加了一個signal peptide。這個signal peptide是來自於 | ||
− | S. | + | <I>S.lividans</I>的幾丁質酶C(signal peptide sequence: MGFRHKAAALAATLALPLAGLVGLASPAQA)。在進行轉錄後,signal peptide會引導AMPs到E.coli的分泌系統。在pre-mature peptide穿越periplasmic space,peptidase會辨認signal peptide上的Ala-Gln-Ala氨基酸序列,並且在signal peptide和mature peptide連接處的兩個Ala之間將之分開。最後分泌出AMPs到LB 培養液中。 |
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為了確保我們的分泌系統能順利運作。我們調整了Signiferin 還有Epinicedin-1的N-terminal加了一個Ala去幫助peptidase能夠順利做切割,並且接續將我們的AMPs分泌到胞外。我們在網頁的modeling page中呈現了用軟體預測結構的結果,分析在我們加了一個Ala後是否會影響蛋白的摺疊過程。 | 為了確保我們的分泌系統能順利運作。我們調整了Signiferin 還有Epinicedin-1的N-terminal加了一個Ala去幫助peptidase能夠順利做切割,並且接續將我們的AMPs分泌到胞外。我們在網頁的modeling page中呈現了用軟體預測結構的結果,分析在我們加了一個Ala後是否會影響蛋白的摺疊過程。 | ||
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− | In order to have more efficient to get our AMPs, we treated signal peptide upstream of the N-terminal of antimicrobial peptides to facilitate the peptide production. This signal peptide is comes from chitinase C of S.lividans (MGFRHKAAALAATLALPLAGLVGLASPAQA).<a href="#tcu_sing_references_1">[1]</a> After translation process signal peptide will lead AMPs to the secretion system of E.coli. <a href="#tcu_sing_references_2">[2]</a> When the pre-mature peptides go through the periplasmic space, peptidase will identified the cleavage site Ala-Gln-Ala and cut at the double Ala at the signal and mature peptide linkage site. Then separate signal peptide from AMPs. Finally, secreting AMPs to the LB culture medium. | + | In order to have more efficient to get our AMPs, we treated signal peptide upstream of the N-terminal of antimicrobial peptides to facilitate the peptide production. This signal peptide is comes from chitinase C of <I>S.lividans</I> (MGFRHKAAALAATLALPLAGLVGLASPAQA).<a href="#tcu_sing_references_1">[1]</a> After translation process signal peptide will lead AMPs to the secretion system of <I>E.coli</I>. <a href="#tcu_sing_references_2">[2]</a> When the pre-mature peptides go through the periplasmic space, peptidase will identified the cleavage site Ala-Gln-Ala and cut at the double Ala at the signal and mature peptide linkage site. Then separate signal peptide from AMPs. Finally, secreting AMPs to the LB culture medium. |
<br><br> | <br><br> | ||
To make sure the secretion system is work we attached an Ala at the N-terminal of AMPs. So we had modified the amino acid sequence of Signiferin and Epinecidin-1 to facilitate the secretion process. And we had used structure prediction software to analysis the attached Ala affect the peptide folding process or not in our <a href="https://2015.igem.org/Team:TCU_Taiwan/Modeling/Protein_structure">modeling page</a>. | To make sure the secretion system is work we attached an Ala at the N-terminal of AMPs. So we had modified the amino acid sequence of Signiferin and Epinecidin-1 to facilitate the secretion process. And we had used structure prediction software to analysis the attached Ala affect the peptide folding process or not in our <a href="https://2015.igem.org/Team:TCU_Taiwan/Modeling/Protein_structure">modeling page</a>. | ||
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<td style="vertical-align:text-top;" align="left">[1]</td> | <td style="vertical-align:text-top;" align="left">[1]</td> | ||
<td width="90%"> | <td width="90%"> | ||
− | Fujii, T. and K. Miyashita, Multiple domain structure in a chitinase gene (chiC) of Streptomyces lividans. J Gen Microbiol, 1993. 139(4): p. 677-86. | + | Fujii, T. and K. Miyashita, <I>Multiple domain structure in a chitinase gene (chiC) of Streptomyces lividans</I>. J Gen Microbiol, 1993. 139(4): p. 677-86. |
</td> | </td> | ||
</tr> | </tr> | ||
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<td style="vertical-align:text-top;" align="left">[2]</td> | <td style="vertical-align:text-top;" align="left">[2]</td> | ||
<td width="90%"> | <td width="90%"> | ||
− | Tokuyasu, K., et al., Production of a recombinant chitin deacetylase in the culture medium of Escherichia coli cells. FEBS Lett, 1999. 458(1): p. 23-6. | + | Tokuyasu, K., et al., <I>Production of a recombinant chitin deacetylase in the culture medium of Escherichia coli cells</I>. FEBS Lett, 1999. 458(1): p. 23-6. |
</td> | </td> |
Revision as of 03:35, 8 September 2015
Signal Peptide |
為了能夠有效的為了能夠使我們更有效地拿到我們的指定抗菌肽,我們在設計序列時在AMPs的N-terminal加了一個signal peptide。這個signal peptide是來自於
S.lividans的幾丁質酶C(signal peptide sequence: MGFRHKAAALAATLALPLAGLVGLASPAQA)。在進行轉錄後,signal peptide會引導AMPs到E.coli的分泌系統。在pre-mature peptide穿越periplasmic space,peptidase會辨認signal peptide上的Ala-Gln-Ala氨基酸序列,並且在signal peptide和mature peptide連接處的兩個Ala之間將之分開。最後分泌出AMPs到LB 培養液中。
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