Difference between revisions of "Team:Aalto-Helsinki/LabResults"
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<ul id="sidenav" class="nav nav-stacked"><!-- nav-pills if we want rounded corners --> | <ul id="sidenav" class="nav nav-stacked"><!-- nav-pills if we want rounded corners --> | ||
− | <li><a href="# | + | <li><a href="#propane" data-scroll="modeling"><h3>Propane Production</h3></a></li> |
− | <li><a href="# | + | <li><a href="#small" data-scroll="lab"><h4>Small Scale Production</h4></a></li> |
− | <li><a href="# | + | <li><a href="#cont" data-scroll="future"><h4>Continuous Production</h4></a></li> |
<li><a href="#"><h3 style="border-top:solid;">To the top</h3></a></li> | <li><a href="#"><h3 style="border-top:solid;">To the top</h3></a></li> | ||
<li><a href="https://2015.igem.org/Team:Aalto-Helsinki/Results"><h3 >To the Parent Page</h3></a></li> | <li><a href="https://2015.igem.org/Team:Aalto-Helsinki/Results"><h3 >To the Parent Page</h3></a></li> | ||
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<h1>Laboratory Results</h1> | <h1>Laboratory Results</h1> | ||
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− | < | + | <section id="propane" class="active" data-anchor="propane"> |
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+ | <h2>Propane production</h2> | ||
− | < | + | <p>Because of the time limit, our propane producing <i>E.coli</i> strain wasn't competely constructed. We decided to try small scale and chemostat production with <i>E.coli</i> BL21 (DE3 ΔyjgB ΔyqhD, pET-TPC4 + pCDF-cAD + pACYC-Fdx-Fpr) made by <a href="http://www.nature.com/ncomms/2014/140902/ncomms5731/full/ncomms5731.html" target="_blank">Kallio et al.</a> which differs from our own strain with two enzymes at the beginning of the reaction pathway. Thus, experiments with Kallio's strain largely reveal how our own strain would have behaved. More information available at the <a href="https://2015.igem.org/Team:Aalto-Helsinki/Project" target="_blank">Project page</a>.</p> |
− | + | </section> | |
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+ | <section id="small" data-anchor="small"> | ||
<h3>Small scale production</h3> | <h3>Small scale production</h3> | ||
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<p>Two samples were incubated 17 h with 50 RPM shaking in 22 ml vials. Propane concentrations were <b>111 μg/l</b> and <b>88 μg/l</b> where the litres were as in the volume of cultivation media. Furthermore, strain's growth rate was significant as the OD600 (1 ml cuvettes) increased from 0.1425 to 0.5212 for 1h 10 min time scale. The rate was assumed to be much lower because TB-media contained four different antibiotics which were needed to keep plasmids inside of bacteria. Details about standards, peaks etc. for GS/MS can be seen in <a href="www.eifileaviela.fi" target="_blank">this file</a>.</p> | <p>Two samples were incubated 17 h with 50 RPM shaking in 22 ml vials. Propane concentrations were <b>111 μg/l</b> and <b>88 μg/l</b> where the litres were as in the volume of cultivation media. Furthermore, strain's growth rate was significant as the OD600 (1 ml cuvettes) increased from 0.1425 to 0.5212 for 1h 10 min time scale. The rate was assumed to be much lower because TB-media contained four different antibiotics which were needed to keep plasmids inside of bacteria. Details about standards, peaks etc. for GS/MS can be seen in <a href="www.eifileaviela.fi" target="_blank">this file</a>.</p> | ||
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+ | </section> | ||
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+ | <section id="cont" data-anchor="cont"> | ||
<h3>Continuous production</h3> | <h3>Continuous production</h3> | ||
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<figure style="float:right;margin-left:30px;margin-bottom:40px;"> | <figure style="float:right;margin-left:30px;margin-bottom:40px;"> | ||
<img src="https://static.igem.org/mediawiki/2015/8/84/Aalto-Helsinki_figure_for_continuous_Growth.PNG" style="width:500px"/> | <img src="https://static.igem.org/mediawiki/2015/8/84/Aalto-Helsinki_figure_for_continuous_Growth.PNG" style="width:500px"/> | ||
− | <figcaption>Figure 1. Population density and dissolved oxygen.</figcaption> | + | <figcaption><b>Figure 1.</b> Population density and dissolved oxygen.</figcaption> |
</figure> | </figure> | ||
<figure style="float:right;margin-left:30px;margin-top:10px;"> | <figure style="float:right;margin-left:30px;margin-top:10px;"> | ||
<img src="https://static.igem.org/mediawiki/2015/f/f2/Aalto-Helsinki_figure_for_continuous_glucose_ph.PNG " style="width:500px"/> | <img src="https://static.igem.org/mediawiki/2015/f/f2/Aalto-Helsinki_figure_for_continuous_glucose_ph.PNG " style="width:500px"/> | ||
− | <figcaption>Figure 2. Glucose content and pH-level.</figcaption> | + | <figcaption><b>Figure 2.</b> Glucose content and pH-level.</figcaption> |
</figure> | </figure> | ||
− | <p>0.5L chemostat experiment with 44 ml/h flow rate was successful. With 1.0 l/h aeration, the propane content of reactor's gas phase was determined to be <b>4.5-22.7 μg/l</b> with GC/MS. The | + | <p>0.5L chemostat experiment with 44 ml/h flow rate was successful. With 1.0 l/h aeration, the propane content of reactor's gas phase was determined to be <b>4.5-22.7 μg/l</b> with GC/MS. The results were calculated when 0.1-0.5 μg of propane was gathered from reactor's gas exhaust into a 22ml gas chromatography vial. However, these values were below GC-standard line so the accuracy may have decreased. The GC-samples were also gathered after the second steady state was over. Nevertheless, the result proves that propane can be formed industrially with continuous production.</p> |
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<p>More information about the experiment available at the <a href="https://static.igem.org/mediawiki/2015/f/f9/Aalto-Helsinki_IGEM_BL21_Chemostat_Aug_25_2015.xls" target="_blank">Process data sheet</a> and the <a href="https://static.igem.org/mediawiki/2015/6/6c/Aalto-Helsinki_Notes_for_25-31.8_Continuous_production_and_gc_analysis.pdf" target="_blank">Lab book</a>. Details about standards, peaks etc. for GS/MS can be seen in <a href="www.eifileaviela.fi" target="_blank">this file</a>. </p> | <p>More information about the experiment available at the <a href="https://static.igem.org/mediawiki/2015/f/f9/Aalto-Helsinki_IGEM_BL21_Chemostat_Aug_25_2015.xls" target="_blank">Process data sheet</a> and the <a href="https://static.igem.org/mediawiki/2015/6/6c/Aalto-Helsinki_Notes_for_25-31.8_Continuous_production_and_gc_analysis.pdf" target="_blank">Lab book</a>. Details about standards, peaks etc. for GS/MS can be seen in <a href="www.eifileaviela.fi" target="_blank">this file</a>. </p> | ||
− | + | </section> | |
<p style="margin-bottom:0;padding-bottom:10%;"></p> | <p style="margin-bottom:0;padding-bottom:10%;"></p> | ||
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Revision as of 13:18, 13 September 2015