• Team
  • Member
  • Amoy
  • Attributions
• Project
  • Description
  • Background
  • Methods
  • Results
  • Discussion
  • Future Work
• Notebook
  • Notebook
  • Protocols
  • Parts
  • Gallery
• Interlab
• Newsletter
  • Introduction
  • Contribution
  • Discussion
  • Links
• Practices
  • Promotion
  • Talk
  • Communication
  • Collaborations
• Judging
  • Medal Criteria
  • Acknowledgement
• Safety

METHODS

Ⅰ. Molecular Cloning

Our genetic circuits are constructed by using the standard biological parts from igem headquarter. The plasmids pUC18-leudh and pUC18-fdh synthesized by Sangon Biotech Ltd(Shanghai) are used as the template for PCR reaction in order to obtain the leudh and fdh. After double enzyme digestion at EcoRI and SpeI site, terminator B0015 is linked with each gene. Meanwhile, promoter LacI and RBS_B0034 are linked with the same steps. Plasmid psB1C3-ldh-termintor and psB1C3-fdh-termintor are digested by restriction enzymes XbaI and PstI. Plasmid psB1C3-LacI-rbs_B0034 is digested by restriction enzymes SpeI and PstI. After ligation by T4 ligase, circuits made by promoter, rbs, gene and terminator are completed. Each different circuits at this stage are all constructed as this method. Thereby we obtain three circuits with gene ldh and one circuit with gene fdh. Eventually, we connect different circuits with gene ldh to the same circuits with gene fdh.

See more protocols please click here--NOTEBOOK: protocols.

Ⅱ. Characterization

1. Expression of LeuDH and FDH

The LeuDH gene and FDH gene was expressed in Rosetta 2(DE3)pLysS cells. The culture was grown at 37 °C. At an optical density (OD600) of 0.8, the enzyme expression was induced with the most appropriate concentration of isopropylthiogalactoside at 18 °C for 12 h. Cells were harvested by centrifugation. The cell pellet was suspended with 7.5 ml of PBS buffer ,and the cells were broken using Homogenizer. The broken cells were centrifuged at 8000×g for 15min. Supernatant is the cell-free extract. The resulting enzyme solution was used for enzyme activity detection and SDS-PAGE .

2. Enzyme and protein assays

Enzyme activity was measured by spectrophotometrically mon-itoring the changes in the NADH concentration during the reactions as changes in the absorbance at 340 nm (ε = 6220 M−1 cm−1 ). The reductive amination was started by adding NADH to the previously incubated reaction mix-ture.

In the 96 hole plate, each sample was measured in two parallel samples, each with 220μL of the enzyme reaction system, and the 20μL was added to the reaction system. Set the wavelength of 340nm Eliasa, each 10s reading time, reading 15 points, calculate the absorbance rate of change △A with initial velocity method.

When the condition is certain, the amount of enzyme required for catalytic production or consumption of 1 mol NADH per minute is defined as an enzyme activity unit.

Calculation of enzyme activity:

U/mL = △A × K × VT / VS × ε × d

K：Sample dilution multiple
VT: Total volume（ul）
VS: Sample volume（ul）
d = Ratio of color cup light（d=0.5cm）
ε = molar extinction coefficient(ε=6.22 )

The reaction system of leucine dehydrogenase was: 180μL 1mol/L NH4Cl buffer，10μL 0.5M TMA，10μL 4.4 mM NADH，sample 20μL.

The reaction system of formate dehydrogenase was: 180μL 1mol/L PBS buffer，10μL 0.5M Ammonium formate，10μL 4.4 mM NAD+，sample 20μL.

3. HPLC

Add the 10mL 1M NH3OH –NH4Cl buffer, smudge cells，add TMA , ammonium formate ，NADH，constant volume to 15mL, and the resulting reaction mixture was incubated at 37 °C for about 1,2,4,6,8,10，12，24,48,72 h. The amino acid product was separated via ion-exchange resin (Amberlite IR-120H) and characterized by comparing the retention time on high-performance liquid chromatography (HPLC) with the authentic standards. The enantiomeric purity of the product was determined by chiral HPLC analysis .