Difference between revisions of "Team:SJTU-Software/home"

Revision as of 22:17, 15 September 2015

Base Wiki

Many existing biobricks are not well documented, which make it challenging to use them. Here we present a web-based tool BASE (Biobrick Auxiliary Selection Explorer) to search, evaluate and visualize biobricks at part, devise and system levels. At part-level, similar to our work last year, biobrick parts are scored according to their current status, user comments and reviews, times of citation and etc. At device level, features, such as the order of parts and the co-existence frequency of two parts in a device, are added into the scoring system. At system-level, the regulation relationship between devices is added to the scoring system. At each level, the biobricks can be searched, evaluated and ranked according to their scores. A visualization function is also provided. In addition, the score can also be calculated according to a user-defined configuration, and an automatic adjusting system is also provided to incorporate users' selection preference.

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-   	<p class = "panelTitle">BASE:A web-based tool for biobrick evaluation, helping researchers bulid new devices and systems.<br/><br/>The BASE web server is designed to provide a ranking to all existing biobricks and help users design their new devices.<br/>Firstly, users can use the search function to find biobricks according to the score given by BASE and choose one they need.Then users can make their own devices by using construction function. After constructing, users could upload the device to BASE, and improve the device via the compare function. At last, users may apply the upload function to submit the device to the iGEM Registry and/or BASE database.
+   	<p class = "panelTitle">Many existing biobricks are not well documented, which make it challenging to use them. Here we present a web-based tool BASE (Biobrick Auxiliary Selection Explorer) to search, evaluate and visualize biobricks at part, devise and system levels. At part-level, similar to our work last year, biobrick parts are scored according to their current status, user comments and reviews, times of citation and etc. At device level, features, such as the order of parts and the co-existence frequency of two parts in a device, are added into the scoring system. At system-level, the regulation relationship between devices is added to the scoring system. At each level, the biobricks can be searched, evaluated and ranked according to their scores. A visualization function is also provided. In addition, the score can also be calculated according to a user-defined configuration, and an automatic adjusting system is also provided to incorporate users' selection preference.
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