Difference between revisions of "Team:Northeastern Boston/Project"
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− | + | <div id='page-header__notebook' class='page-header'> | |
− | + | <h1 class="page-header__title" align="left" style="border-width:0">OUR PROJECT</h1> | |
+ | </div> | ||
+ | <div class='notebook'> | ||
+ | <div class="minimal-dropdown__container"> | ||
+ | <div class="minimal-dropdown__header"> | ||
+ | <h2 class="minimal-dropdown__title">Overview</h2> | ||
+ | <a class='minimal-dropdown__arrow'></a> | ||
+ | </div> | ||
+ | <div class="minimal-dropdown__content hidden"> | ||
+ | <p><i>"Dr. George D. Yancopoulos, chief scientific officer of Regeneron, | ||
+ | said the crisis had pointed up shortcomings in biodefense. “Nobody is | ||
+ | really prepared,” he said. “Nobody in the world has rapid response | ||
+ | capabilities.”</i>—New York Times, January 2015</p> | ||
− | + | <p>Humans need improved methods for making therapeutic antibodies. | |
− | + | Producing these complex proteins is hard but important; the 2014 Ebola | |
− | + | Outbreak illustrates the urgency. In response, we propose the use of | |
− | + | microalgae as a widescale antibody production platform. Microalgae have | |
− | + | all the benefits of higher-level plants but scale faster and are easier | |
− | + | to process. Furthermore, from a holistic point of view, microalgae are an | |
− | + | ideal chassis; their primary carbon source is CO<sub>2</sub> and they are | |
− | + | unlikely to harbor mammalian pathogens.</p> | |
− | + | </div> | |
− | + | </div> | |
− | + | <div class="minimal-dropdown__container"> | |
− | + | <div class="minimal-dropdown__header"> | |
− | + | <h2 class="minimal-dropdown__title">The Need</h2> | |
− | + | <a class='minimal-dropdown__arrow'></a> | |
− | + | </div> | |
− | + | <div class="minimal-dropdown__content hidden"> | |
− | + | ||
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− | + | ||
− | + | <p><i>"I rate the chance of a nuclear war within my lifetime as being | |
− | + | fairly low. I rate the chance of a widespread epidemic, far worse than | |
− | + | Ebola, in my lifetime, as well over 50 percent."</i> —Bill | |
− | + | Gates</p><img id="outbreakgif" src= | |
− | + | "http://giant.gfycat.com/SaltyElectricAmazonparrot.gif" style= | |
− | + | "width:100%"> | |
− | + | <p id="outbreakgifdesc"></p>Epidemic spread modeling by Brockmann's group | |
− | + | at Humbolt University. (http://rocs.hu-berlin.de/). This model shows the | |
− | + | spread of a theoretical outbreak of a particularly contagious pathogen in | |
− | + | Atlanta, GA. The spread is over 60 days.<br> | |
− | + | ||
− | + | ||
− | + | <p></p> | |
− | + | ||
− | + | ||
− | + | ||
− | + | <p>With the most recent Ebola Outbreak, over 28 thousand were infected by | |
+ | the deadly pathogen and an estimated 11 thousand died. Meanwhile, a | ||
+ | potent anti-Ebola antibody cocktail, ZMapp, was going through preclinical | ||
+ | studies. In a study where 18 heavily Ebola infected monkeys treated with | ||
+ | ZMapp, all 18 survived, including several in the hemorrhaging stage of | ||
+ | the disease. Given the timing and urgent need, ZMapp was approved for use | ||
+ | in humans. One of the first patients treated was Dr. Kent Brantly, the | ||
+ | American missionary worker who went on to recover from the disease.</p> | ||
− | + | <p>Antibodies are unique and powerful tools for eliminating pathogens. | |
− | + | They do so by both neutralization—the hindrance of function by surface | |
− | + | binding—and complementation—calling in the immune system. Unfortunately, | |
− | + | ZMapp’s utility was hindered by lack of supply, not an apparent inability | |
− | + | to neutralize the virus (as illustrated by the Rhesus model). Only 7 | |
− | + | doses were available throughout the Ebola Outbreak, despite infection | |
− | + | rates in the thousands. Ultimately, it represents a problem, or complete | |
− | + | lack thereof, for rapid antibody production capabilities.</p> | |
− | + | <p>A proposed solution was the tobacco plant. A relatively | |
− | + | well-understood and engineered organism, it was the method for making | |
− | + | ZMapp. Producers inject plant leaves with agrobacterium containing the | |
− | + | DNA for the therapeutic antibody. The plants grow and the antibody is | |
− | + | purified from the plant cell lysate. In theory, this is a quick and | |
− | + | inexpensive method for rapidly producing lots of antibody, dependent upon | |
− | + | arable land rather than high-sterility CHO-vats. In practice, it is | |
− | + | not.</p> | |
+ | </div> | ||
+ | </div> | ||
− | + | <div class="minimal-dropdown__container"> | |
− | + | <div class="minimal-dropdown__header"> | |
− | + | <h2 class="minimal-dropdown__title">Some Solutions</h2> | |
− | + | <a class='minimal-dropdown__arrow'></a> | |
− | + | </div> | |
− | + | <div class="minimal-dropdown__content hidden"> | |
− | + | <p>It might one day be possible to make drugs entirely without cells. | |
− | + | Protein-producing gels or other systems could produce drugs economically | |
− | + | in vitro avoiding the inherent biological complexity and metabolic needs | |
− | + | of living organisms. [<a href= | |
+ | "http://www.nature.com/nmat/journal/v8/n5/pdf/nmat2419.pdf" target= | ||
+ | "_blank">1,</a> <a href= | ||
+ | "http://www.sciencedirect.com/science/article/pii/S1389172314001509" | ||
+ | target="_blank">2</a>]</p> | ||
− | + | <p>It might, alternatively, be possible to inject the mRNA of a desired | |
− | + | antibody directly, thereby offloading the antibody production to the | |
− | + | patient rather than delivering a bolus of externally produced antibody. | |
− | + | Moderna, for example, has developed synthetic mRNA that codes for | |
− | + | polypeptides while avoiding immune-surveillance (and therefore | |
− | + | elimination). It’s currently unclear how this mRNA will be targeted to | |
− | + | delivery into B cells, and for how long the B cells will continue to | |
− | + | produce antibodies. This approach, offloading manufacturing of antibodies | |
− | + | to the patient, has been extensively researched in the context of AIDS. | |
− | + | [<a href="http://www.ncbi.nlm.nih.gov/pubmed/8864752" target= | |
− | + | "_blank">3</a>, <a href="http://www.mdpi.com/1999-4915/6/2/428/html" | |
− | + | target="_blank">4</a>, <a href= | |
− | + | "http://www.nature.com/ni/journal/v14/n1/full/ni.2480.html" target= | |
− | + | "_blank">5</a>]</p> | |
− | + | <p>In might be possible to design synthetic bacteria (like Synlogic) for | |
− | + | the gut that produce Nanobodies (small enough to be produced in bacteria | |
− | + | and lacking complex do-sulfide bonds). These pathogen targeting | |
− | + | nanobodies might prove capable of reaching the circulatory system after | |
− | + | being turned on by an exogenous transcription factor, however, these | |
− | + | nanobodies might still face the complication of improper glycosylation | |
− | + | and immune clearance. [<a href= | |
− | + | "http://europepmc.org/abstract/med/19876789" target="_blank">6</a>]</p> | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | <p>Despite the volume of researchers working on futuristic solutions, | |
− | + | recombinant antibodies are known to work. They are less theoretical and | |
− | + | more a problem of logistics. And logistically, antibodies from Chinese | |
− | + | hamster ovary cells or tobacco plants never materialized during the 2014 | |
− | + | Ebola Outbreak. So the question becomes: can microalgae produce properly | |
− | + | folded antibodies at a high enough concentration and at a cheap enough | |
− | + | cost to warrant their use as a widescale antibody production platform? We | |
− | + | believe it’s worth further investigation and will present the possible | |
+ | long-term implementation of microalgae production facilities.</p> | ||
+ | </div> | ||
+ | </div> | ||
− | + | <div class="minimal-dropdown__container"> | |
− | + | <div class="minimal-dropdown__header"> | |
− | + | <h2 class="minimal-dropdown__title">A Green Safety Net</h2> | |
− | + | <a class='minimal-dropdown__arrow'></a> | |
− | + | </div> | |
− | + | <div class="minimal-dropdown__content hidden"> | |
− | + | <p>Within each of us (health and medication depending) is an adaptive | |
− | + | immune system. A major cell in this system is the B Cell. Immunocompetent | |
− | + | B cells are covered in B cell receptors (BCRs). These BCRs respond to | |
− | + | non-self antigens. When a foreign antigen binds to a BCR, it activates | |
− | + | the B cell to turn into plasma B cells, dedicated producers of specific | |
+ | antibodies against a portion of the antigen that triggered the | ||
+ | response.</p> | ||
− | + | <p>Some of the plasma B cells enter secondary lymphoid organs, otherwise | |
− | + | known as “germinal centers.” Here, B cells undergo rapid mutation so that | |
− | + | the selected-for plasma B cell population produces higher affinity | |
− | + | antibodies. The resulting plasma B cells begin leave the germinal center | |
− | + | to pump out high levels of antibody into the bloodstream. [<a href= | |
− | + | "https://www.rndsystems.com/research-area/b-cells" target= | |
− | + | "_blank">7]</a></p> | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | <p>This is what the human species lacks on a macro-level infrastructure. | |
− | + | Hospitals and care-centers act as an innate response, responding in the | |
− | + | emergence of a contagion to quarantine the sick and provide nourishment. | |
− | + | They are not designed with the capability to rapidly adapt and attack the | |
− | + | pathogen. For good reason, drugs for human treatment undergo rigorous FDA | |
− | + | review before approval. The average inception to market timeline for an | |
− | + | FDA approved drug is 12 years (note: this is after the drug has been | |
+ | developed). This is too long for rapid drug turnaround and represents a | ||
+ | significant threat to human health.</p><img id="outbreakgif" src= | ||
+ | "https://static.igem.org/mediawiki/2015/6/61/Algae_distribution_map-01.jpg" | ||
+ | style="width:100%"> | ||
− | + | <p id="outbreakgifdesc"></p>A hypothetical map of distributed | |
− | + | algae-antibody production facilities. Orange dots are locations of | |
− | + | existing facilities that could be repurposed. Yellow dots are | |
− | + | hypothetical potential power plant algae hybrid facilities. They are | |
− | + | smaller in scale but repurposable in a time of need. Green dots are | |
− | + | potential large sized facilities. These too could produce commodity | |
− | + | goods, like food for livestock or subsidized biofuel, until needed | |
− | + | antibody.<br> | |
− | + | ||
− | + | ||
− | + | ||
− | + | <p></p> | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | <p>In industrialized countries with significant carbon taxes, like the UK | |
+ | and Australia, microalgae facilities might become commonplace alongside | ||
+ | power plants. Sapphire Energy, Sunomix, and Solazyme have demonstrated | ||
+ | the market potential of microalgae products. It would be strategic to | ||
+ | further distribute algae plants near heavily populated areas. Were a | ||
+ | pandemic to occur, these facilities could expunge their | ||
+ | commodity-producing microalgae and replace it with a high antibody | ||
+ | producing strain of microalgae, like recombinant <i>Chlamydomonas | ||
+ | reinhardtii</i> or <i>Phaeodactylum tricornutum</i>.</p> | ||
+ | </div> | ||
+ | </div> | ||
− | + | <div class="minimal-dropdown__container"> | |
− | + | <div class="minimal-dropdown__header"> | |
− | + | <h2 class="minimal-dropdown__title">Cost/Benefit</h2> | |
− | + | <a class='minimal-dropdown__arrow'></a> | |
− | + | </div> | |
− | + | <div class="minimal-dropdown__content hidden"> | |
− | + | <p>The true benefit of using microalgae for antibody production is the | |
− | + | lower fixed cost of facilities.</p><img id="outbreakgif" src= | |
− | + | "https://static.igem.org/mediawiki/2015/8/89/Volume_Relative_Algae_Facility.jpg" | |
− | + | style="width:80%"> | |
− | + | ||
− | + | <p></p><br> | |
− | + | ||
− | + | ||
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− | + | ||
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− | + | ||
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− | + | ||
− | + | ||
− | + | <p></p> | |
− | + | <p>CHO facilities, on average, cost around $200M for 80,000L. A similarly | |
+ | sized algae facility at 15,000L would cost an estimated $1.3M. With | ||
+ | economies of scale, algae production facilities become significantly | ||
+ | cheaper. $1B would be a 14 Billion Liter algae farm (5,500 acres) | ||
+ | according to one techno-economic analysis (Rogers, 2013. Algae | ||
+ | Research).</p><img src= | ||
+ | "https://static.igem.org/mediawiki/2015/b/b1/Producitivty_algae_graph.png" | ||
+ | style="width:80%"> | ||
− | + | <p>The biggest challenge for microalgae will be improved productivity. | |
− | + | Because of fixed and variable costs, microaglae will not need to be 100% | |
− | + | as productive as CHO's (extremely unlikely in the near-term, given the | |
− | + | amount of research and time invested in CHO's), however, they will need | |
− | + | to improve 1-2 magnitudes over current levels. CHOs are far and beyond | |
− | + | the most efficient antibody producers, with some strains now exceeding | |
− | + | grams of product per liter of culture media. Furthermore, they are | |
− | + | entrenched in the industry: 61 of the 90 therapeutic proteins produced in | |
+ | mammalian cells come from CHO's (Rader, 2015. Bioprocessing Journal). | ||
+ | Furthermore, of the 174 recombinant FDA approved drugs on the market, | ||
+ | only one is made by plant cells (Elelyso from carrot cell | ||
+ | culture).</p><img src= | ||
+ | "https://static.igem.org/mediawiki/2015/5/5d/Max_density_algae.png" style= | ||
+ | "width:80%"> | ||
− | + | <p>An encouraging number is maximum biomass. Microalgae can quickly reach | |
− | + | high densities, with some culture conditions allowing biomass in excess | |
− | + | of 10g/L. With a higher cellular density, and significantly larger scales | |
− | + | for the same investment, microalgae may soon contend with CHO's.</p> | |
− | + | </div> | |
− | + | </div> | |
− | + | ||
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− | + | ||
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− | + | ||
− | + | <p>Sources: <a href= | |
− | + | "https://static.igem.org/mediawiki/2015/4/46/Screen_Shot_2015-09-10_at_7.44.36_PM.png" | |
− | + | target="_blank">Facility Volume vs Cost</a>, <a href= | |
− | + | "https://static.igem.org/mediawiki/2015/9/96/Screen_Shot_2015-09-10_at_7.44.56_PM.png" | |
− | + | target="_blank">Productivity</a>, and <a href= | |
− | + | "https://static.igem.org/mediawiki/2015/e/e1/Screen_Shot_2015-09-10_at_7.45.03_PM.png" | |
− | + | target="_blank">Cell Density</a></p> | |
− | + | </div> | |
− | + | </div> | |
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</body> | </body> | ||
</html> | </html> |
Revision as of 01:14, 18 September 2015
OUR PROJECT
Sources: Facility Volume vs Cost, Productivity, and Cell Density