Difference between revisions of "Team:IIT Kharagpur"

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<b>Indian Institute of Technology Kharagpur</b> was first established after Indian independence as a cradle for nurturing young, bright minds to solve inhouse problems of the country. With the proud motto “Dedicated to the service of nation”, we at iGEM IIT Kharagpur decided to tackle a problem which is a direct contributor to the most disturbing issue of Indian subcontinent in twenty first century - Food Insecurity, apart from obvious challenge of growing population, depreciating resources and inequitable distribution of wealth. However there are multiple sublayers to the issue which often get unnoticed due to their isolated, unstructured and unobserved nature. One issue is that of food spoilage. This too has many dimensions but perhaps the most underrated one is household level food spoilage. This is a major concern in our lives mainly because such problems have a direct impact on the health of a person, which is the most important thing.
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<b>Indian Institute of Technology Kharagpur</b> was established after Indian independence as a cradle for nurturing young, bright minds to solve in-house problems of the country. With the proud motto “Dedicated to the service of nation”, we at iGEM IIT Kharagpur decided to tackle a problem which is a direct contributor to the most disturbing issue that we face in twenty-first century - Food Insecurity.</br></br> The major challenges that mankind faces today are growing population, rapidly depleting resources and inequitable distribution of wealth. However, apart form this, many people in and undeveloped and developing nations also lack consistent access to safe and healthy food. We might have made giant leaps in science and technology, but,if we cannot ensure food security for every human being on earth, all the development in science and technology amounts to nothing. There are many factors that contribute to food insecurity, but, the one factor that is the most unfortunate and that demands immediate attention is food spoilage. Every year, globally, food worth billions of dollars is lost due to spoilage caused by microorganisms. By 2050, the population of the world is expected to cross 10 billion and with 10 billion mouths to feed, we cannot afford such a colossal wastage of food. Any community, for its development, needs a healthy and fit population that can put the available resources to the best use. As our health is directly impacted by the quality of the food we eat, household food spoilage is also a major concern.
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  A majority of Food spoilage issues are caused by the biochemical activities of a microbial community that grows in the prevailing conditions. Despite chill chains, chemical preservatives and a much better understanding of microbial food spoilage, it has been estimated that 25% of all foods produced globally is lost post harvest or post slaughter due to microbial spoilage. Each and every food product harbours its own specific and characteristic microflora at any given point in time during production and storage. This microflora is a function of raw material flora, processing, preservation and storage conditions. Despite the variability in all of the three, some very clear patterns emerge, and based on knowledge of a few chemical and physical parameters it is possible with great accuracy to predict which microorganisms will grow and dominate in a particular product. At the point of sensory rejection (spoilage), the so-called spoilage microflora (or spoilage association) is composed of microorganisms that have contributed to the spoilage and microorganisms that have grown but not caused unpleasant changes. </br></br>
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  Food spoilage is usually caused by the biochemical activities of microbes that grow in the prevailing conditions. Despite chill chains, chemical preservatives and a much better understanding of microbial food spoilage, it has been estimated that 25% of all foods produced globally is lost post harvest or post slaughter due to microbial spoilage. Each and every food product harbors its own specific and characteristic microflora at any given point in time during production and storage. This microflora is a function of raw material flora, processing, preservation and storage conditions. Despite the variability in all of the three, some very clear patterns emerge, and based on knowledge of a few chemical and physical parameters it is possible to predict, with great accuracy, which microorganisms will grow and dominate in a particular product.</br></br>
Some of the present tools that help in identifying food spoilage are CFU analysis, ATP bioluminescence assays, volatile compound analysis, Electrical impedance measurement etc. </br></br> <b>Flaws</b>: These are time-consuming, tedious, expensive and not accurate enough. </br> </br>
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Some of the present tools that help in identifying food spoilage are CFU analysis, ATP bioluminescence assays, volatile compound analysis and Electrical impedance measurement.</br></br> <b>Flaws</b>: However, these methods are time-consuming and need elaborate lab equipment and skilled technicians. Clearly, these tedious and expensive methods cannot be used for day-to-day purposes.</br> </br>
  What if we are given a tool which could monitor food spoilage and in itself is harmless to the body?
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  What if there was a tiny sensor that could detect food spoilage and tell you without the use of any equipment?
  </br>Let us help you know about a cool application of Biotechnology as marker of food spoilage!
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  </br>We'll let you in on a secret. Apparently, you can make sensors(well, biosensors to be precise) out of microbes to detect other microbes that cause food spoilage. Think its cool? Read on
 
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  It has been 4 decades since it is known that bacteria possess cell to cell communication capability using a phenomenon known as Quorum sensing. The communication is stimulated via certain signal molecules that freely diffuse into the environment. As the bacterial population in a region increases, the concentration of signal molecules also increases. After a certain threshold concentration, these signal molecules bind to promoter and induce the gene of interest. This helps them to express their genes together and cause a larger impact.  They also “become aware” of the concentration of their own species and of other species in their vicinity.</br></br>
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  It is known, for quite some time now, that bacteria possess cell to cell communication capability. The communication is stimulated via certain signal molecules that freely diffuse into the environment. As the bacterial population in a region increases, the concentration of signal molecules also increases. After a certain threshold concentration, these signal molecules bind to promoter and induce the gene of interest. This helps them to express their genes together and cause a larger impact.  They also “become aware” of the concentration of their own species and of other species in their vicinity. This is called <b>Quorum Sensing</b>. A quorum is basically the minimum number of members of a group necessary for that group to function. In the context of microbes, it is the minimum cell density that a microbial community needs to achieve before a certain enzyme or protein is activated.</br></br>
  
Recent research has highlighted as a fact the involvement of quorum sensing in food spoilage. The enzymatic activities that account for quality degradation of the food product are regulated by quorum sensing activity. Also, the quorum molecules (autoinducers) are detected in spoiled food products. </br></br>
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Bacteria use this system in situations where they need to reach a certain before carrying out some action. A good example is infections. If our bodies are infected by a small number of bacteria, they can be easily eliminated by the body's immune response. However, if the bacteria stay dormant for a long duration and turn on their "disease causing genes" only after reaching a large enough number, our immune system will be caught off-guard. </br></br>
  
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Recent research has highlighted the involvement of quorum sensing in food spoilage. The enzymatic activities that account for quality degradation of the food product are regulated by quorum sensing.</br></br>
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We aim to make a genetically engineered bacteria that senses the concentration of quorum signals (currently only AHL) and detects the amount of food spoiling bacteria by expressing a colour pigment if signal stimulus is beyond a threshold value. This does gives a binary check that if the food under detection is spoilt or not. </br></br>
 
We aim to make a genetically engineered bacteria that senses the concentration of quorum signals (currently only AHL) and detects the amount of food spoiling bacteria by expressing a colour pigment if signal stimulus is beyond a threshold value. This does gives a binary check that if the food under detection is spoilt or not. </br></br>
  
 
The engineered E.coli  senses the concentration of other bacteria and triggers the expression of lycopene (red-coloured) pigment which can be easily observed with the naked eye.</br></br>
 
The engineered E.coli  senses the concentration of other bacteria and triggers the expression of lycopene (red-coloured) pigment which can be easily observed with the naked eye.</br></br>
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Revision as of 13:26, 18 September 2015

Idea Summary

Indian Institute of Technology Kharagpur was established after Indian independence as a cradle for nurturing young, bright minds to solve in-house problems of the country. With the proud motto “Dedicated to the service of nation”, we at iGEM IIT Kharagpur decided to tackle a problem which is a direct contributor to the most disturbing issue that we face in twenty-first century - Food Insecurity.

The major challenges that mankind faces today are growing population, rapidly depleting resources and inequitable distribution of wealth. However, apart form this, many people in and undeveloped and developing nations also lack consistent access to safe and healthy food. We might have made giant leaps in science and technology, but,if we cannot ensure food security for every human being on earth, all the development in science and technology amounts to nothing. There are many factors that contribute to food insecurity, but, the one factor that is the most unfortunate and that demands immediate attention is food spoilage. Every year, globally, food worth billions of dollars is lost due to spoilage caused by microorganisms. By 2050, the population of the world is expected to cross 10 billion and with 10 billion mouths to feed, we cannot afford such a colossal wastage of food. Any community, for its development, needs a healthy and fit population that can put the available resources to the best use. As our health is directly impacted by the quality of the food we eat, household food spoilage is also a major concern.
Food spoilage is usually caused by the biochemical activities of microbes that grow in the prevailing conditions. Despite chill chains, chemical preservatives and a much better understanding of microbial food spoilage, it has been estimated that 25% of all foods produced globally is lost post harvest or post slaughter due to microbial spoilage. Each and every food product harbors its own specific and characteristic microflora at any given point in time during production and storage. This microflora is a function of raw material flora, processing, preservation and storage conditions. Despite the variability in all of the three, some very clear patterns emerge, and based on knowledge of a few chemical and physical parameters it is possible to predict, with great accuracy, which microorganisms will grow and dominate in a particular product.

Some of the present tools that help in identifying food spoilage are CFU analysis, ATP bioluminescence assays, volatile compound analysis and Electrical impedance measurement.

Flaws: However, these methods are time-consuming and need elaborate lab equipment and skilled technicians. Clearly, these tedious and expensive methods cannot be used for day-to-day purposes.

What if there was a tiny sensor that could detect food spoilage and tell you without the use of any equipment?
We'll let you in on a secret. Apparently, you can make sensors(well, biosensors to be precise) out of microbes to detect other microbes that cause food spoilage. Think its cool? Read on

Project Overview

It is known, for quite some time now, that bacteria possess cell to cell communication capability. The communication is stimulated via certain signal molecules that freely diffuse into the environment. As the bacterial population in a region increases, the concentration of signal molecules also increases. After a certain threshold concentration, these signal molecules bind to promoter and induce the gene of interest. This helps them to express their genes together and cause a larger impact. They also “become aware” of the concentration of their own species and of other species in their vicinity. This is called Quorum Sensing. A quorum is basically the minimum number of members of a group necessary for that group to function. In the context of microbes, it is the minimum cell density that a microbial community needs to achieve before a certain enzyme or protein is activated.

Bacteria use this system in situations where they need to reach a certain before carrying out some action. A good example is infections. If our bodies are infected by a small number of bacteria, they can be easily eliminated by the body's immune response. However, if the bacteria stay dormant for a long duration and turn on their "disease causing genes" only after reaching a large enough number, our immune system will be caught off-guard.

Recent research has highlighted the involvement of quorum sensing in food spoilage. The enzymatic activities that account for quality degradation of the food product are regulated by quorum sensing.

We aim to make a genetically engineered bacteria that senses the concentration of quorum signals (currently only AHL) and detects the amount of food spoiling bacteria by expressing a colour pigment if signal stimulus is beyond a threshold value. This does gives a binary check that if the food under detection is spoilt or not.

The engineered E.coli senses the concentration of other bacteria and triggers the expression of lycopene (red-coloured) pigment which can be easily observed with the naked eye.

APPLICATION

Packets will have a pouch with a sample of product and our engineered bacteria. Detection of AHLs (in the case of food contamination) in the product sample will trigger the expression of the lycopene gene that will produce the red-coloured pigment (easily observable to the human eye).
PARTS