Difference between revisions of "Team:William and Mary/Software"
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Revision as of 00:41, 19 September 2015
Software W&M iGEM Presents: Sequence Analyzing Software Download our sequence analyzing software here. Then see below for the steps to use the software. (1) Place all files with observed sequences in a single folder. (2) Make input spreadsheet of expected sequences following the example template. (3) Place folder of observed sequences and input spreadsheet in the same directory as sequence_analyzer.py. (4) Run sequence_analyzer.py. To do this, navigate in command line to directory holding sequence_analyzer.py, input spreadsheet and folder of observed sequences. There, Input “python sequence_analyzer.py” (5) On command, enter the name of the folder with observed sequences and the name of the input spreadsheet and press Enter. (These are separate commands with separate inputs. For each input, place the name in quotes, .i.e. “150722 Sequences”.) (6) Program will output each analysis into a separate .docx file in a Results folder which it will create. See example output. (7) Program will output summary into a spreadsheet in Results folder. (8) Check command line output. These will indicate if there is any discrepancy between the output and the observed sequence.
Example Output