Difference between revisions of "Team:IISER Pune/Software"

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<center><img src="https://static.igem.org/mediawiki/2015/a/a5/Team_IISER_Pune_TT11.gif"></img></center><hr />
 
<center><img src="https://static.igem.org/mediawiki/2015/a/a5/Team_IISER_Pune_TT11.gif"></img></center><hr />
  
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<h3>Automated Quantification of GFP per cells using in-house ImageJ macros</h3>
 
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<img src="https://static.igem.org/mediawiki/2015/6/60/IISER_PUNE_SoftwareGFP.png"  width="80%"></img>
 
  
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<h3>Simulation Codes</h3>
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<p>Along the course of our we came across several scenarios to model .<br>
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We simulated variations of  the Quorum sensing terminator and the fast robust oscillator which are described by sets of differential equations.
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To solve them we have used a common template for integration.
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</p>
  
  
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<p>The python source code for the Terminator module modelling can be downloaded here.</p>
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<h4>Terminator module </h4>
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[[Media:IISER_PUNE_Software_QS_terminator_with_pigment_initiated_AHL(pigment_constitutive).txt|Approach 3]]
  
  
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<h3>Automated Quantification of GFP per cells using in-house ImageJ macros</h3>
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<img src="https://static.igem.org/mediawiki/2015/6/60/IISER_PUNE_SoftwareGFP.png"  width="80%"></img>
  
  
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<h3>Simulation Codes</h3>
 
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<p>Along the course of our we came across several scenarios to model .<br>
 
−
We simulated variations of  the Quorum sensing terminator and the fast robust oscillator which are described by sets of differential equations.
 
−
To solve them we have used a common template
 
−
</p>
 
  
  

Revision as of 23:02, 20 November 2015


Top

Simulation Codes

Along the course of our we came across several scenarios to model .
We simulated variations of the Quorum sensing terminator and the fast robust oscillator which are described by sets of differential equations. To solve them we have used a common template for integration.

The python source code for the Terminator module modelling can be downloaded here.

Terminator module

[[Media:IISER_PUNE_Software_QS_terminator_with_pigment_initiated_AHL(pigment_constitutive).txt|Approach 3]]

Automated Quantification of GFP per cells using in-house ImageJ macros